RNA–Protein interactions for RNA: ENST00000368662.9

TUBE1-202, Transcript of tubulin epsilon 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TUBE1, Length 2,142 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-202ENST00000368662 NISCHQ9Y2I1 1504 aa28.58■■■□□ 2.17
TUBE1-202ENST00000368662 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
TUBE1-202ENST00000368662 ZCCHC6Q5VYS8 1495 aaKnown RBP23.95■■□□□ 1.42
TUBE1-202ENST00000368662 ABCC9O60706 1549 aa23.93■■□□□ 1.42
TUBE1-202ENST00000368662 DCAF1Q9Y4B6 1507 aa23.7■■□□□ 1.38
TUBE1-202ENST00000368662 DCAF8L2P0C7V8 631 aa23.62■■□□□ 1.37
TUBE1-202ENST00000368662 MYO15BQ96JP2 1530 aa23.57■■□□□ 1.36
TUBE1-202ENST00000368662 NACADO15069 1562 aa23.47■■□□□ 1.35
TUBE1-202ENST00000368662 RB1CC1Q8TDY2 1594 aa23.34■■□□□ 1.33
TUBE1-202ENST00000368662 SHROOM4Q9ULL8 1493 aa22.96■■□□□ 1.27
TUBE1-202ENST00000368662 SCRIBQ14160 1630 aa22.95■■□□□ 1.26
TUBE1-202ENST00000368662 UNC13AQ9UPW8 1703 aa22.75■■□□□ 1.23
TUBE1-202ENST00000368662 BICRAQ9NZM4 1560 aa22.57■■□□□ 1.2
TUBE1-202ENST00000368662 PABPN1Q86U42 306 aaKnown RBP eCLIP22.48■■□□□ 1.19
TUBE1-202ENST00000368662 CECR2Q9BXF3 1484 aa22.16■■□□□ 1.14
TUBE1-202ENST00000368662 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
TUBE1-202ENST00000368662 SMARCA4P51532 1647 aa22.03■■□□□ 1.12
TUBE1-202ENST00000368662 RSF1Q96T23 1441 aaPredicted RBP22.02■■□□□ 1.12
TUBE1-202ENST00000368662 MROH2BQ7Z745 1585 aa22.01■■□□□ 1.11
TUBE1-202ENST00000368662 SUPT5HO00267 1087 aaKnown RBP21.97■■□□□ 1.11
TUBE1-202ENST00000368662 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.1
TUBE1-202ENST00000368662 PEG3Q9GZU2 1588 aa21.82■■□□□ 1.08
TUBE1-202ENST00000368662 WIZO95785 1651 aa21.8■■□□□ 1.08
TUBE1-202ENST00000368662 SMARCA2P51531 1590 aa21.78■■□□□ 1.08
TUBE1-202ENST00000368662 ATAD2BQ9ULI0 1458 aa21.75■■□□□ 1.07
TUBE1-202ENST00000368662 CC2D2AQ9P2K1 1620 aa21.68■■□□□ 1.06
TUBE1-202ENST00000368662 NCAPD3P42695 1498 aa21.65■■□□□ 1.06
TUBE1-202ENST00000368662 TOP2AP11388 1531 aaKnown RBP21.64■■□□□ 1.05
TUBE1-202ENST00000368662 BAZ1BQ9UIG0 1483 aaKnown RBP21.62■■□□□ 1.05
TUBE1-202ENST00000368662 HMGXB3Q12766 1538 aa21.61■■□□□ 1.05
TUBE1-202ENST00000368662 CCDC88BA6NC98 1476 aa21.38■■□□□ 1.01
TUBE1-202ENST00000368662 DNAJC5BQ9UF47 199 aa21.34■■□□□ 1.01
TUBE1-202ENST00000368662 CFTRP13569 1480 aa21.07■□□□□ 0.96
TUBE1-202ENST00000368662 CADPSQ9ULU8 1353 aa21.06■□□□□ 0.96
TUBE1-202ENST00000368662 LAMC3Q9Y6N6 1575 aa20.98■□□□□ 0.95
TUBE1-202ENST00000368662 PRDM2Q13029 1718 aa20.93■□□□□ 0.94
TUBE1-202ENST00000368662 NESP48681 1621 aa20.89■□□□□ 0.94
TUBE1-202ENST00000368662 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
TUBE1-202ENST00000368662 PDS5BQ9NTI5 1447 aa20.84■□□□□ 0.93
TUBE1-202ENST00000368662 FANCD2Q9BXW9 1451 aa20.81■□□□□ 0.92
TUBE1-202ENST00000368662 ABCC8Q09428 1581 aa20.78■□□□□ 0.92
TUBE1-202ENST00000368662 WRNQ14191 1432 aaPredicted RBP eCLIP20.77■□□□□ 0.91
TUBE1-202ENST00000368662 TRIM41Q8WV44 630 aa20.74■□□□□ 0.91
TUBE1-202ENST00000368662 CEP164Q9UPV0 1460 aa20.73■□□□□ 0.91
TUBE1-202ENST00000368662 KIF21AQ7Z4S6 1674 aa20.66■□□□□ 0.9
TUBE1-202ENST00000368662 SYNJ1O43426 1573 aa20.64■□□□□ 0.89
TUBE1-202ENST00000368662 TOP2BQ02880 1626 aa20.63■□□□□ 0.89
TUBE1-202ENST00000368662 CUX1P39880 1505 aa20.62■□□□□ 0.89
TUBE1-202ENST00000368662 ERCC6Q03468 1493 aa20.62■□□□□ 0.89
TUBE1-202ENST00000368662 BIVM-ERCC5R4GMW8 1640 aa20.61■□□□□ 0.89
TUBE1-202ENST00000368662 DNMBPQ6XZF7 1577 aa20.58■□□□□ 0.89
TUBE1-202ENST00000368662 MRC2Q9UBG0 1479 aa20.56■□□□□ 0.88
TUBE1-202ENST00000368662 URB2Q14146 1524 aaKnown RBP20.54■□□□□ 0.88
TUBE1-202ENST00000368662 TOPBP1Q92547 1522 aa20.54■□□□□ 0.88
TUBE1-202ENST00000368662 WDR62O43379 1518 aa20.46■□□□□ 0.87
TUBE1-202ENST00000368662 FGD5Q6ZNL6 1462 aa20.46■□□□□ 0.87
TUBE1-202ENST00000368662 THOC2Q8NI27 1593 aaKnown RBP20.44■□□□□ 0.86
TUBE1-202ENST00000368662 POLA1P09884 1462 aaPredicted RBP20.42■□□□□ 0.86
TUBE1-202ENST00000368662 EEA1Q15075 1411 aa20.36■□□□□ 0.85
TUBE1-202ENST00000368662 SOGA1O94964 1423 aa20.35■□□□□ 0.85
TUBE1-202ENST00000368662 ABCA10Q8WWZ4 1543 aa20.31■□□□□ 0.84
TUBE1-202ENST00000368662 RAD54L2Q9Y4B4 1467 aa20.3■□□□□ 0.84
TUBE1-202ENST00000368662 KIF27Q86VH2 1401 aa20.29■□□□□ 0.84
TUBE1-202ENST00000368662 CUX2O14529 1486 aa20.28■□□□□ 0.84
TUBE1-202ENST00000368662 IFT140Q96RY7 1462 aa20.27■□□□□ 0.84
TUBE1-202ENST00000368662 TARBP1Q13395 1621 aaKnown RBP20.26■□□□□ 0.83
TUBE1-202ENST00000368662 FAM9AQ8IZU1 332 aaPredicted RBP20.26■□□□□ 0.83
TUBE1-202ENST00000368662 RUSC2Q8N2Y8 1516 aa20.24■□□□□ 0.83
TUBE1-202ENST00000368662 WDR97A6NE52 1622 aa20.23■□□□□ 0.83
TUBE1-202ENST00000368662 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
TUBE1-202ENST00000368662 TDRD9Q8NDG6 1382 aaKnown RBP20.15■□□□□ 0.82
TUBE1-202ENST00000368662 ABCA5Q8WWZ7 1642 aa20.14■□□□□ 0.82
TUBE1-202ENST00000368662 GAPVD1Q14C86 1478 aa20.13■□□□□ 0.81
TUBE1-202ENST00000368662 IGF1RP08069 1367 aa20.11■□□□□ 0.81
TUBE1-202ENST00000368662 ERICH3Q5RHP9 1530 aa20.09■□□□□ 0.81
TUBE1-202ENST00000368662 ZNF608Q9ULD9 1512 aaPredicted RBP20.09■□□□□ 0.81
TUBE1-202ENST00000368662 AQRO60306 1485 aaKnown RBP eCLIP20.07■□□□□ 0.8
TUBE1-202ENST00000368662 KIF21BO75037 1637 aa20.05■□□□□ 0.8
TUBE1-202ENST00000368662 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
TUBE1-202ENST00000368662 PRXQ9BXM0 1461 aa20.05■□□□□ 0.8
TUBE1-202ENST00000368662 EIF4G3O43432 1585 aaKnown RBP20.05■□□□□ 0.8
TUBE1-202ENST00000368662 CUL7Q14999 1698 aa20.02■□□□□ 0.8
TUBE1-202ENST00000368662 GOLGA3Q08378 1498 aa20.01■□□□□ 0.79
TUBE1-202ENST00000368662 PBRM1Q86U86 1689 aa20.01■□□□□ 0.79
TUBE1-202ENST00000368662 CARMIL1Q5VZK9 1371 aa20.01■□□□□ 0.79
TUBE1-202ENST00000368662 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
TUBE1-202ENST00000368662 RAPGEF2Q9Y4G8 1499 aa19.97■□□□□ 0.79
TUBE1-202ENST00000368662 FHAD1B1AJZ9 1412 aa19.93■□□□□ 0.78
TUBE1-202ENST00000368662 MAGI1Q96QZ7 1491 aaPredicted RBP19.93■□□□□ 0.78
TUBE1-202ENST00000368662 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
TUBE1-202ENST00000368662 ADAMTS12P58397 1594 aa19.91■□□□□ 0.78
TUBE1-202ENST00000368662 SNAPC4Q5SXM2 1469 aa19.91■□□□□ 0.78
TUBE1-202ENST00000368662 UBTFP17480 764 aaKnown RBP19.9■□□□□ 0.78
TUBE1-202ENST00000368662 TNIKQ9UKE5 1360 aa19.88■□□□□ 0.77
TUBE1-202ENST00000368662 SYNJ2O15056 1496 aa19.84■□□□□ 0.77
TUBE1-202ENST00000368662 CHMP7Q8WUX9 453 aaPredicted RBP19.79■□□□□ 0.76
TUBE1-202ENST00000368662 GRIN2AQ12879 1464 aa19.78■□□□□ 0.76
TUBE1-202ENST00000368662 FBLN2P98095 1184 aa19.73■□□□□ 0.75
TUBE1-202ENST00000368662 CEP162Q5TB80 1403 aa19.72■□□□□ 0.75
TUBE1-202ENST00000368662 CTTNBP2Q8WZ74 1663 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms