RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 NISCHQ9Y2I1 1504 aa46.74■■■■■ 5.07
CKS1B-203ENST00000368439 CCDC180Q9P1Z9 1646 aa41.69■■■■■ 4.27
CKS1B-203ENST00000368439 ABCC9O60706 1549 aa40.99■■■■■ 4.15
CKS1B-203ENST00000368439 RB1CC1Q8TDY2 1594 aa39.33■■■■□ 3.89
CKS1B-203ENST00000368439 NACADO15069 1562 aa39.23■■■■□ 3.87
CKS1B-203ENST00000368439 DCAF8L2P0C7V8 631 aa39.01■■■■□ 3.84
CKS1B-203ENST00000368439 MYO15BQ96JP2 1530 aa38.94■■■■□ 3.82
CKS1B-203ENST00000368439 ZCCHC6Q5VYS8 1495 aaKnown RBP38.89■■■■□ 3.82
CKS1B-203ENST00000368439 DCAF1Q9Y4B6 1507 aa38.68■■■■□ 3.78
CKS1B-203ENST00000368439 UNC13AQ9UPW8 1703 aa38.55■■■■□ 3.76
CKS1B-203ENST00000368439 PABPN1Q86U42 306 aaKnown RBP eCLIP38.24■■■■□ 3.71
CKS1B-203ENST00000368439 BICRAQ9NZM4 1560 aa38.23■■■■□ 3.71
CKS1B-203ENST00000368439 SCRIBQ14160 1630 aa37.98■■■■□ 3.67
CKS1B-203ENST00000368439 DNAJC5BQ9UF47 199 aa37.94■■■■□ 3.66
CKS1B-203ENST00000368439 SHROOM4Q9ULL8 1493 aa37.73■■■■□ 3.63
CKS1B-203ENST00000368439 EIF4G1Q04637 1599 aaKnown RBP37.19■■■■□ 3.54
CKS1B-203ENST00000368439 CC2D2AQ9P2K1 1620 aa37.11■■■■□ 3.53
CKS1B-203ENST00000368439 CECR2Q9BXF3 1484 aa36.87■■■■□ 3.49
CKS1B-203ENST00000368439 SMARCA4P51532 1647 aa36.34■■■■□ 3.41
CKS1B-203ENST00000368439 BAZ1AQ9NRL2 1556 aaPredicted RBP36.22■■■■□ 3.39
CKS1B-203ENST00000368439 NCAPD3P42695 1498 aa36.21■■■■□ 3.39
CKS1B-203ENST00000368439 ATAD2BQ9ULI0 1458 aa36.19■■■■□ 3.38
CKS1B-203ENST00000368439 SMARCA2P51531 1590 aa36.1■■■■□ 3.37
CKS1B-203ENST00000368439 MROH2BQ7Z745 1585 aa36.03■■■■□ 3.36
CKS1B-203ENST00000368439 HMGXB3Q12766 1538 aa36.01■■■■□ 3.36
CKS1B-203ENST00000368439 PEG3Q9GZU2 1588 aa36.01■■■■□ 3.35
CKS1B-203ENST00000368439 BAZ1BQ9UIG0 1483 aaKnown RBP35.83■■■■□ 3.33
CKS1B-203ENST00000368439 WIZO95785 1651 aa35.64■■■■□ 3.3
CKS1B-203ENST00000368439 RSF1Q96T23 1441 aaPredicted RBP35.5■■■■□ 3.27
CKS1B-203ENST00000368439 NESP48681 1621 aa35.43■■■■□ 3.26
CKS1B-203ENST00000368439 ERCC6Q03468 1493 aa35.29■■■■□ 3.24
CKS1B-203ENST00000368439 LAMC3Q9Y6N6 1575 aa35.29■■■■□ 3.24
CKS1B-203ENST00000368439 TOP2AP11388 1531 aaKnown RBP35.22■■■■□ 3.23
CKS1B-203ENST00000368439 CADPSQ9ULU8 1353 aa35.12■■■■□ 3.21
CKS1B-203ENST00000368439 CUX2O14529 1486 aa35.08■■■■□ 3.21
CKS1B-203ENST00000368439 KIF21AQ7Z4S6 1674 aa35.04■■■■□ 3.2
CKS1B-203ENST00000368439 PDS5BQ9NTI5 1447 aa35.01■■■■□ 3.2
CKS1B-203ENST00000368439 THOC2Q8NI27 1593 aaKnown RBP34.99■■■■□ 3.19
CKS1B-203ENST00000368439 CFTRP13569 1480 aa34.88■■■■□ 3.17
CKS1B-203ENST00000368439 CCDC88BA6NC98 1476 aa34.8■■■■□ 3.16
CKS1B-203ENST00000368439 FANCD2Q9BXW9 1451 aa34.71■■■■□ 3.15
CKS1B-203ENST00000368439 MRC2Q9UBG0 1479 aa34.7■■■■□ 3.15
CKS1B-203ENST00000368439 CEP164Q9UPV0 1460 aa34.67■■■■□ 3.14
CKS1B-203ENST00000368439 PRDM2Q13029 1718 aa34.64■■■■□ 3.14
CKS1B-203ENST00000368439 WDR62O43379 1518 aa34.63■■■■□ 3.13
CKS1B-203ENST00000368439 URB2Q14146 1524 aaKnown RBP34.43■■■■□ 3.1
CKS1B-203ENST00000368439 DNAJC5Q9H3Z4 198 aa34.32■■■■□ 3.08
CKS1B-203ENST00000368439 SUPT5HO00267 1087 aaKnown RBP34.3■■■■□ 3.08
CKS1B-203ENST00000368439 TOPBP1Q92547 1522 aa34.15■■■■□ 3.06
CKS1B-203ENST00000368439 ABCC8Q09428 1581 aa34.09■■■■□ 3.05
CKS1B-203ENST00000368439 DNMBPQ6XZF7 1577 aa34.08■■■■□ 3.05
CKS1B-203ENST00000368439 IFT140Q96RY7 1462 aa33.97■■■■□ 3.03
CKS1B-203ENST00000368439 ZNF608Q9ULD9 1512 aaPredicted RBP33.89■■■■□ 3.02
CKS1B-203ENST00000368439 POLA1P09884 1462 aaPredicted RBP33.84■■■■□ 3.01
CKS1B-203ENST00000368439 TARBP1Q13395 1621 aaKnown RBP33.84■■■■□ 3.01
CKS1B-203ENST00000368439 CUX1P39880 1505 aa33.81■■■■□ 3
CKS1B-203ENST00000368439 EIF4G3O43432 1585 aaKnown RBP33.74■■■□□ 2.99
CKS1B-203ENST00000368439 FGD5Q6ZNL6 1462 aa33.71■■■□□ 2.99
CKS1B-203ENST00000368439 RAD54L2Q9Y4B4 1467 aa33.7■■■□□ 2.99
CKS1B-203ENST00000368439 SOGA1O94964 1423 aa33.66■■■□□ 2.98
CKS1B-203ENST00000368439 AQRO60306 1485 aaKnown RBP eCLIP33.63■■■□□ 2.972e-6■□□□□ 10.6
CKS1B-203ENST00000368439 OSCARQ8IYS5 282 aa33.53■■■□□ 2.96
CKS1B-203ENST00000368439 WDR97A6NE52 1622 aa33.52■■■□□ 2.96
CKS1B-203ENST00000368439 TDRD9Q8NDG6 1382 aaKnown RBP33.51■■■□□ 2.96
CKS1B-203ENST00000368439 BIVM-ERCC5R4GMW8 1640 aa33.46■■■□□ 2.95
CKS1B-203ENST00000368439 TOP2BQ02880 1626 aa33.45■■■□□ 2.95
CKS1B-203ENST00000368439 WRNQ14191 1432 aaPredicted RBP eCLIP33.44■■■□□ 2.94
CKS1B-203ENST00000368439 SYNJ1O43426 1573 aa33.43■■■□□ 2.94
CKS1B-203ENST00000368439 CHD1O14646 1710 aa33.39■■■□□ 2.94
CKS1B-203ENST00000368439 ABCA10Q8WWZ4 1543 aa33.38■■■□□ 2.93
CKS1B-203ENST00000368439 ABCA5Q8WWZ7 1642 aa33.31■■■□□ 2.92
CKS1B-203ENST00000368439 GRIN2BQ13224 1484 aa33.31■■■□□ 2.92
CKS1B-203ENST00000368439 SNAPC4Q5SXM2 1469 aa33.31■■■□□ 2.92
CKS1B-203ENST00000368439 PBRM1Q86U86 1689 aa33.28■■■□□ 2.92
CKS1B-203ENST00000368439 GAPVD1Q14C86 1478 aa33.27■■■□□ 2.92
CKS1B-203ENST00000368439 MAGI1Q96QZ7 1491 aaPredicted RBP33.25■■■□□ 2.91
CKS1B-203ENST00000368439 FBLN2P98095 1184 aa33.18■■■□□ 2.9
CKS1B-203ENST00000368439 SYNJ2O15056 1496 aa33.13■■■□□ 2.89
CKS1B-203ENST00000368439 RIMBP3CA6NJZ7 1639 aa33.11■■■□□ 2.89
CKS1B-203ENST00000368439 RIMBP3BA6NNM3 1639 aa33.11■■■□□ 2.89
CKS1B-203ENST00000368439 RIMBP3Q9UFD9 1639 aa33.11■■■□□ 2.89
CKS1B-203ENST00000368439 CHMP7Q8WUX9 453 aaPredicted RBP33.07■■■□□ 2.88
CKS1B-203ENST00000368439 ARHGEF11O15085 1522 aa33.06■■■□□ 2.88
CKS1B-203ENST00000368439 CLASP1Q7Z460 1538 aa33.02■■■□□ 2.88
CKS1B-203ENST00000368439 TRIM41Q8WV44 630 aa33■■■□□ 2.87
CKS1B-203ENST00000368439 ADAMTS12P58397 1594 aa32.99■■■□□ 2.87
CKS1B-203ENST00000368439 ERICH3Q5RHP9 1530 aa32.97■■■□□ 2.87
CKS1B-203ENST00000368439 GRIN2AQ12879 1464 aa32.89■■■□□ 2.86
CKS1B-203ENST00000368439 FHAD1B1AJZ9 1412 aa32.88■■■□□ 2.85
CKS1B-203ENST00000368439 NUP160Q12769 1436 aa32.78■■■□□ 2.84
CKS1B-203ENST00000368439 ARAP1Q96P48 1450 aa32.78■■■□□ 2.84
CKS1B-203ENST00000368439 CEP170Q5SW79 1584 aa32.78■■■□□ 2.84
CKS1B-203ENST00000368439 KIF27Q86VH2 1401 aa32.74■■■□□ 2.83
CKS1B-203ENST00000368439 CYB5RLQ6IPT4 315 aa32.7■■■□□ 2.83
CKS1B-203ENST00000368439 IGF1RP08069 1367 aa32.7■■■□□ 2.82
CKS1B-203ENST00000368439 CUL7Q14999 1698 aa32.62■■■□□ 2.81
CKS1B-203ENST00000368439 SHROOM2Q13796 1616 aa32.6■■■□□ 2.81
CKS1B-203ENST00000368439 ERCC6L2Q5T890 1561 aa32.55■■■□□ 2.8
CKS1B-203ENST00000368439 RUSC2Q8N2Y8 1516 aa32.51■■■□□ 2.79
CKS1B-203ENST00000368439 CARMIL1Q5VZK9 1371 aa32.45■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms