RNA–Protein interactions for RNA: ENST00000368277.3

PMF1-202, Transcript of polyamine modulated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PMF1, Length 1,068 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-202ENST00000368277 NISCHQ9Y2I1 1504 aa34.03■■■■□ 3.04
PMF1-202ENST00000368277 CCDC180Q9P1Z9 1646 aa30.57■■■□□ 2.48
PMF1-202ENST00000368277 ABCC9O60706 1549 aa30.53■■■□□ 2.48
PMF1-202ENST00000368277 RB1CC1Q8TDY2 1594 aa29.02■■■□□ 2.24
PMF1-202ENST00000368277 NACADO15069 1562 aa28.79■■■□□ 2.2
PMF1-202ENST00000368277 DCAF8L2P0C7V8 631 aa28.69■■■□□ 2.18
PMF1-202ENST00000368277 UNC13AQ9UPW8 1703 aa28.63■■■□□ 2.17
PMF1-202ENST00000368277 DNAJC5BQ9UF47 199 aa28.54■■■□□ 2.16
PMF1-202ENST00000368277 PABPN1Q86U42 306 aaKnown RBP eCLIP28.39■■■□□ 2.14
PMF1-202ENST00000368277 MYO15BQ96JP2 1530 aa28.32■■■□□ 2.12
PMF1-202ENST00000368277 BICRAQ9NZM4 1560 aa28.25■■■□□ 2.11
PMF1-202ENST00000368277 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
PMF1-202ENST00000368277 DCAF1Q9Y4B6 1507 aa28.02■■■□□ 2.08
PMF1-202ENST00000368277 SCRIBQ14160 1630 aa27.96■■■□□ 2.07
PMF1-202ENST00000368277 SHROOM4Q9ULL8 1493 aa27.66■■■□□ 2.02
PMF1-202ENST00000368277 CC2D2AQ9P2K1 1620 aa27.6■■■□□ 2.01
PMF1-202ENST00000368277 EIF4G1Q04637 1599 aaKnown RBP27.52■■■□□ 2
PMF1-202ENST00000368277 CECR2Q9BXF3 1484 aa27.43■■□□□ 1.98
PMF1-202ENST00000368277 SMARCA4P51532 1647 aa26.61■■□□□ 1.85
PMF1-202ENST00000368277 NCAPD3P42695 1498 aa26.53■■□□□ 1.84
PMF1-202ENST00000368277 ATAD2BQ9ULI0 1458 aa26.53■■□□□ 1.84
PMF1-202ENST00000368277 SMARCA2P51531 1590 aa26.45■■□□□ 1.82
PMF1-202ENST00000368277 HMGXB3Q12766 1538 aa26.41■■□□□ 1.82
PMF1-202ENST00000368277 BAZ1AQ9NRL2 1556 aaPredicted RBP26.4■■□□□ 1.82
PMF1-202ENST00000368277 ERCC6Q03468 1493 aa26.3■■□□□ 1.8
PMF1-202ENST00000368277 BAZ1BQ9UIG0 1483 aaKnown RBP26.3■■□□□ 1.8
PMF1-202ENST00000368277 MROH2BQ7Z745 1585 aa26.29■■□□□ 1.8
PMF1-202ENST00000368277 NESP48681 1621 aa26.28■■□□□ 1.8
PMF1-202ENST00000368277 PEG3Q9GZU2 1588 aa26.26■■□□□ 1.79
PMF1-202ENST00000368277 CUX2O14529 1486 aa26.17■■□□□ 1.78
PMF1-202ENST00000368277 WIZO95785 1651 aa26.06■■□□□ 1.76
PMF1-202ENST00000368277 KIF21AQ7Z4S6 1674 aa26.04■■□□□ 1.76
PMF1-202ENST00000368277 DNAJC5Q9H3Z4 198 aa26.04■■□□□ 1.76
PMF1-202ENST00000368277 THOC2Q8NI27 1593 aaKnown RBP26.02■■□□□ 1.76
PMF1-202ENST00000368277 LAMC3Q9Y6N6 1575 aa26■■□□□ 1.75
PMF1-202ENST00000368277 PDS5BQ9NTI5 1447 aa25.76■■□□□ 1.71
PMF1-202ENST00000368277 CADPSQ9ULU8 1353 aa25.73■■□□□ 1.71
PMF1-202ENST00000368277 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
PMF1-202ENST00000368277 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
PMF1-202ENST00000368277 MRC2Q9UBG0 1479 aa25.62■■□□□ 1.69
PMF1-202ENST00000368277 WDR62O43379 1518 aa25.58■■□□□ 1.69
PMF1-202ENST00000368277 CEP164Q9UPV0 1460 aa25.54■■□□□ 1.68
PMF1-202ENST00000368277 FANCD2Q9BXW9 1451 aa25.52■■□□□ 1.68
PMF1-202ENST00000368277 CFTRP13569 1480 aa25.48■■□□□ 1.67
PMF1-202ENST00000368277 PRDM2Q13029 1718 aa25.47■■□□□ 1.67
PMF1-202ENST00000368277 URB2Q14146 1524 aaKnown RBP25.36■■□□□ 1.65
PMF1-202ENST00000368277 CCDC88BA6NC98 1476 aa25.31■■□□□ 1.64
PMF1-202ENST00000368277 TOPBP1Q92547 1522 aa25.07■■□□□ 1.6
PMF1-202ENST00000368277 TRIM41Q8WV44 630 aa25.06■■□□□ 1.6
PMF1-202ENST00000368277 ZNF608Q9ULD9 1512 aaPredicted RBP25.05■■□□□ 1.6
PMF1-202ENST00000368277 DNMBPQ6XZF7 1577 aa24.99■■□□□ 1.59
PMF1-202ENST00000368277 IFT140Q96RY7 1462 aa24.99■■□□□ 1.59
PMF1-202ENST00000368277 EIF4G3O43432 1585 aaKnown RBP24.96■■□□□ 1.59
PMF1-202ENST00000368277 OSCARQ8IYS5 282 aa24.91■■□□□ 1.58
PMF1-202ENST00000368277 TARBP1Q13395 1621 aaKnown RBP24.89■■□□□ 1.57
PMF1-202ENST00000368277 ABCC8Q09428 1581 aa24.88■■□□□ 1.57
PMF1-202ENST00000368277 CHD1O14646 1710 aa24.85■■□□□ 1.57
PMF1-202ENST00000368277 RIMBP3CA6NJZ7 1639 aa24.82■■□□□ 1.56
PMF1-202ENST00000368277 RIMBP3BA6NNM3 1639 aa24.82■■□□□ 1.56
PMF1-202ENST00000368277 RIMBP3Q9UFD9 1639 aa24.82■■□□□ 1.56
PMF1-202ENST00000368277 POLA1P09884 1462 aaPredicted RBP24.81■■□□□ 1.56
PMF1-202ENST00000368277 AQRO60306 1485 aaKnown RBP eCLIP24.78■■□□□ 1.569e-8■■■■■ 32
PMF1-202ENST00000368277 RAD54L2Q9Y4B4 1467 aa24.76■■□□□ 1.55
PMF1-202ENST00000368277 CUX1P39880 1505 aa24.7■■□□□ 1.54
PMF1-202ENST00000368277 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
PMF1-202ENST00000368277 ARHGEF11O15085 1522 aa24.67■■□□□ 1.54
PMF1-202ENST00000368277 SOGA1O94964 1423 aa24.63■■□□□ 1.53
PMF1-202ENST00000368277 SUPT5HO00267 1087 aaKnown RBP24.63■■□□□ 1.53
PMF1-202ENST00000368277 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
PMF1-202ENST00000368277 WDR97A6NE52 1622 aa24.61■■□□□ 1.53
PMF1-202ENST00000368277 FBLN2P98095 1184 aa24.58■■□□□ 1.53
PMF1-202ENST00000368277 SNAPC4Q5SXM2 1469 aa24.57■■□□□ 1.52
PMF1-202ENST00000368277 PBRM1Q86U86 1689 aa24.55■■□□□ 1.52
PMF1-202ENST00000368277 ARAP1Q96P48 1450 aa24.45■■□□□ 1.5
PMF1-202ENST00000368277 CLASP1Q7Z460 1538 aa24.42■■□□□ 1.5
PMF1-202ENST00000368277 GRIN2BQ13224 1484 aa24.42■■□□□ 1.5
PMF1-202ENST00000368277 MAGI1Q96QZ7 1491 aaPredicted RBP24.41■■□□□ 1.5
PMF1-202ENST00000368277 CYB5RLQ6IPT4 315 aa24.41■■□□□ 1.5
PMF1-202ENST00000368277 ABCA5Q8WWZ7 1642 aa24.41■■□□□ 1.5
PMF1-202ENST00000368277 SYNJ1O43426 1573 aa24.38■■□□□ 1.49
PMF1-202ENST00000368277 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
PMF1-202ENST00000368277 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
PMF1-202ENST00000368277 ABCA10Q8WWZ4 1543 aa24.35■■□□□ 1.49
PMF1-202ENST00000368277 SYNJ2O15056 1496 aa24.34■■□□□ 1.49
PMF1-202ENST00000368277 CHMP7Q8WUX9 453 aaPredicted RBP24.34■■□□□ 1.49
PMF1-202ENST00000368277 TOP2BQ02880 1626 aa24.29■■□□□ 1.48
PMF1-202ENST00000368277 ADAMTS12P58397 1594 aa24.23■■□□□ 1.47
PMF1-202ENST00000368277 WRNQ14191 1432 aaPredicted RBP eCLIP24.22■■□□□ 1.47
PMF1-202ENST00000368277 GRIN2AQ12879 1464 aa24.15■■□□□ 1.46
PMF1-202ENST00000368277 CEP170Q5SW79 1584 aa24.15■■□□□ 1.46
PMF1-202ENST00000368277 ERCC6L2Q5T890 1561 aa24.14■■□□□ 1.45
PMF1-202ENST00000368277 TRHP20396 242 aaPredicted RBP24.13■■□□□ 1.45
PMF1-202ENST00000368277 ERICH3Q5RHP9 1530 aa24.04■■□□□ 1.44
PMF1-202ENST00000368277 FHAD1B1AJZ9 1412 aa24.02■■□□□ 1.44
PMF1-202ENST00000368277 NUP160Q12769 1436 aa24.02■■□□□ 1.44
PMF1-202ENST00000368277 SHROOM2Q13796 1616 aa24.01■■□□□ 1.43
PMF1-202ENST00000368277 RUSC2Q8N2Y8 1516 aa23.89■■□□□ 1.41
PMF1-202ENST00000368277 PRG4Q92954 1404 aaPredicted RBP23.81■■□□□ 1.4
PMF1-202ENST00000368277 CUL7Q14999 1698 aa23.77■■□□□ 1.4
PMF1-202ENST00000368277 KIF13AQ9H1H9 1805 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms