RNA–Protein interactions for RNA: ENST00000368046.7

CD48-202, Transcript of CD48 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD48, Length 1,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-202ENST00000368046 AEBP2Q6ZN18 517 aaPredicted RBP26.37■■□□□ 1.81
CD48-202ENST00000368046 CHIC1Q5VXU3 224 aa24.64■■□□□ 1.54
CD48-202ENST00000368046 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
CD48-202ENST00000368046 SENP3Q9H4L4 574 aaPredicted RBP22.61■■□□□ 1.21
CD48-202ENST00000368046 PHF23Q9BUL5 403 aaPredicted RBP22.23■■□□□ 1.15
CD48-202ENST00000368046 FOXD1Q16676 465 aa21.17■□□□□ 0.98
CD48-202ENST00000368046 CCDC180Q9P1Z9 1646 aa21.14■□□□□ 0.97
CD48-202ENST00000368046 ABCC9O60706 1549 aa20.86■□□□□ 0.93
CD48-202ENST00000368046 POTEDQ86YR6 584 aa20.82■□□□□ 0.92
CD48-202ENST00000368046 DCAF8L2P0C7V8 631 aa20.12■□□□□ 0.81
CD48-202ENST00000368046 MSH5O43196 834 aa20.08■□□□□ 0.81
CD48-202ENST00000368046 RB1CC1Q8TDY2 1594 aa20■□□□□ 0.79
CD48-202ENST00000368046 NACADO15069 1562 aa19.98■□□□□ 0.79
CD48-202ENST00000368046 MYO15BQ96JP2 1530 aa19.86■□□□□ 0.77
CD48-202ENST00000368046 ZCCHC6Q5VYS8 1495 aaKnown RBP19.82■□□□□ 0.76
CD48-202ENST00000368046 DCAF1Q9Y4B6 1507 aa19.74■□□□□ 0.75
CD48-202ENST00000368046 PIAS4Q8N2W9 510 aaPredicted RBP19.62■□□□□ 0.73
CD48-202ENST00000368046 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
CD48-202ENST00000368046 UNC13AQ9UPW8 1703 aa19.42■□□□□ 0.7
CD48-202ENST00000368046 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
CD48-202ENST00000368046 SCRIBQ14160 1630 aa19.3■□□□□ 0.68
CD48-202ENST00000368046 DNAJC5BQ9UF47 199 aa19.3■□□□□ 0.68
CD48-202ENST00000368046 PPP6R1Q9UPN7 881 aa19.25■□□□□ 0.67
CD48-202ENST00000368046 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
CD48-202ENST00000368046 ADRA2BP18089 450 aa19.15■□□□□ 0.66
CD48-202ENST00000368046 PLPPR3Q6T4P5 718 aa19.14■□□□□ 0.65
CD48-202ENST00000368046 EIF4G1Q04637 1599 aaKnown RBP18.89■□□□□ 0.61
CD48-202ENST00000368046 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
CD48-202ENST00000368046 CECR2Q9BXF3 1484 aa18.76■□□□□ 0.59
CD48-202ENST00000368046 NCAPD3P42695 1498 aa18.5■□□□□ 0.55
CD48-202ENST00000368046 BAZ1AQ9NRL2 1556 aaPredicted RBP18.48■□□□□ 0.55
CD48-202ENST00000368046 SMARCA4P51532 1647 aa18.47■□□□□ 0.55
CD48-202ENST00000368046 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
CD48-202ENST00000368046 SMARCA2P51531 1590 aa18.41■□□□□ 0.54
CD48-202ENST00000368046 MROH2BQ7Z745 1585 aa18.38■□□□□ 0.53
CD48-202ENST00000368046 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
CD48-202ENST00000368046 HMGXB3Q12766 1538 aa18.31■□□□□ 0.52
CD48-202ENST00000368046 BAZ1BQ9UIG0 1483 aaKnown RBP18.28■□□□□ 0.52
CD48-202ENST00000368046 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
CD48-202ENST00000368046 WIZO95785 1651 aa18.13■□□□□ 0.49
CD48-202ENST00000368046 NESP48681 1621 aa18.01■□□□□ 0.47
CD48-202ENST00000368046 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
CD48-202ENST00000368046 CADPSQ9ULU8 1353 aa17.97■□□□□ 0.47
CD48-202ENST00000368046 LAMC3Q9Y6N6 1575 aa17.95■□□□□ 0.46
CD48-202ENST00000368046 TOP2AP11388 1531 aaKnown RBP17.94■□□□□ 0.46
CD48-202ENST00000368046 PDS5BQ9NTI5 1447 aa17.9■□□□□ 0.46
CD48-202ENST00000368046 MAPK8IP2Q13387 824 aaPredicted RBP17.82■□□□□ 0.44
CD48-202ENST00000368046 CUX2O14529 1486 aa17.82■□□□□ 0.44
CD48-202ENST00000368046 CCDC88BA6NC98 1476 aa17.81■□□□□ 0.44
CD48-202ENST00000368046 CFTRP13569 1480 aa17.81■□□□□ 0.44
CD48-202ENST00000368046 DMRT2Q9Y5R5 561 aa17.8■□□□□ 0.44
CD48-202ENST00000368046 SUPT5HO00267 1087 aaKnown RBP17.76■□□□□ 0.43
CD48-202ENST00000368046 FANCD2Q9BXW9 1451 aa17.71■□□□□ 0.43
CD48-202ENST00000368046 CACNB1Q02641 598 aaPredicted RBP17.7■□□□□ 0.42
CD48-202ENST00000368046 KIF21AQ7Z4S6 1674 aa17.7■□□□□ 0.42
CD48-202ENST00000368046 CEP164Q9UPV0 1460 aa17.68■□□□□ 0.42
CD48-202ENST00000368046 THOC2Q8NI27 1593 aaKnown RBP17.67■□□□□ 0.42
CD48-202ENST00000368046 MRC2Q9UBG0 1479 aa17.66■□□□□ 0.42
CD48-202ENST00000368046 WDR62O43379 1518 aa17.57■□□□□ 0.4
CD48-202ENST00000368046 SCAF1Q9H7N4 1312 aaKnown RBP17.52■□□□□ 0.4
CD48-202ENST00000368046 URB2Q14146 1524 aaKnown RBP17.51■□□□□ 0.39
CD48-202ENST00000368046 PRDM2Q13029 1718 aa17.47■□□□□ 0.39
CD48-202ENST00000368046 DNAJC5Q9H3Z4 198 aa17.47■□□□□ 0.39
CD48-202ENST00000368046 ABCC8Q09428 1581 aa17.45■□□□□ 0.38
CD48-202ENST00000368046 TOPBP1Q92547 1522 aa17.4■□□□□ 0.38
CD48-202ENST00000368046 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
CD48-202ENST00000368046 IFT140Q96RY7 1462 aa17.33■□□□□ 0.37
CD48-202ENST00000368046 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
CD48-202ENST00000368046 SOGA1O94964 1423 aa17.25■□□□□ 0.35
CD48-202ENST00000368046 ZNF608Q9ULD9 1512 aaPredicted RBP17.24■□□□□ 0.35
CD48-202ENST00000368046 CUX1P39880 1505 aa17.22■□□□□ 0.35
CD48-202ENST00000368046 RAD54L2Q9Y4B4 1467 aa17.2■□□□□ 0.34
CD48-202ENST00000368046 OSCARQ8IYS5 282 aa17.2■□□□□ 0.34
CD48-202ENST00000368046 FGD5Q6ZNL6 1462 aa17.19■□□□□ 0.34
CD48-202ENST00000368046 DCAF8L1A6NGE4 600 aa17.19■□□□□ 0.34
CD48-202ENST00000368046 AQRO60306 1485 aaKnown RBP eCLIP17.18■□□□□ 0.34
CD48-202ENST00000368046 TARBP1Q13395 1621 aaKnown RBP17.18■□□□□ 0.34
CD48-202ENST00000368046 TDRD9Q8NDG6 1382 aaKnown RBP17.16■□□□□ 0.34
CD48-202ENST00000368046 WRNQ14191 1432 aaPredicted RBP eCLIP17.14■□□□□ 0.33
CD48-202ENST00000368046 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
CD48-202ENST00000368046 FBLN2P98095 1184 aa17.06■□□□□ 0.32
CD48-202ENST00000368046 RNF39Q9H2S5 420 aa17.06■□□□□ 0.32
CD48-202ENST00000368046 TOP2BQ02880 1626 aa17.05■□□□□ 0.32
CD48-202ENST00000368046 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
CD48-202ENST00000368046 WDR97A6NE52 1622 aa17.03■□□□□ 0.32
CD48-202ENST00000368046 SYNJ1O43426 1573 aa17.02■□□□□ 0.32
CD48-202ENST00000368046 BIVM-ERCC5R4GMW8 1640 aa17.02■□□□□ 0.31
CD48-202ENST00000368046 GRIN2BQ13224 1484 aa17.01■□□□□ 0.31
CD48-202ENST00000368046 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
CD48-202ENST00000368046 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
CD48-202ENST00000368046 SNAPC4Q5SXM2 1469 aa16.96■□□□□ 0.31
CD48-202ENST00000368046 MAGI1Q96QZ7 1491 aaPredicted RBP16.95■□□□□ 0.3
CD48-202ENST00000368046 ABCA5Q8WWZ7 1642 aa16.9■□□□□ 0.3
CD48-202ENST00000368046 SYNJ2O15056 1496 aa16.9■□□□□ 0.3
CD48-202ENST00000368046 HOXD11P31277 338 aaPredicted RBP16.86■□□□□ 0.29
CD48-202ENST00000368046 CHD1O14646 1710 aa16.85■□□□□ 0.29
CD48-202ENST00000368046 PBRM1Q86U86 1689 aa16.84■□□□□ 0.29
CD48-202ENST00000368046 TRIM41Q8WV44 630 aa16.83■□□□□ 0.28
CD48-202ENST00000368046 ERICH3Q5RHP9 1530 aa16.82■□□□□ 0.28
CD48-202ENST00000368046 FHAD1B1AJZ9 1412 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms