RNA–Protein interactions for RNA: ENST00000359005.8

TRAPPC4-201, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2 BASIC

Gene TRAPPC4, Length 849 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-201ENST00000359005 NISCHQ9Y2I1 1504 aa24.79■■□□□ 1.56
TRAPPC4-201ENST00000359005 ABCC9O60706 1549 aa22.02■■□□□ 1.12
TRAPPC4-201ENST00000359005 CCDC180Q9P1Z9 1646 aa21.91■■□□□ 1.1
TRAPPC4-201ENST00000359005 DCAF8L2P0C7V8 631 aa21■□□□□ 0.95
TRAPPC4-201ENST00000359005 RB1CC1Q8TDY2 1594 aa20.85■□□□□ 0.93
TRAPPC4-201ENST00000359005 NACADO15069 1562 aa20.8■□□□□ 0.92
TRAPPC4-201ENST00000359005 DNAJC5BQ9UF47 199 aa20.71■□□□□ 0.91
TRAPPC4-201ENST00000359005 PABPN1Q86U42 306 aaKnown RBP eCLIP20.68■□□□□ 0.9
TRAPPC4-201ENST00000359005 MYO15BQ96JP2 1530 aa20.58■□□□□ 0.88
TRAPPC4-201ENST00000359005 ZCCHC6Q5VYS8 1495 aaKnown RBP20.56■□□□□ 0.88
TRAPPC4-201ENST00000359005 DCAF1Q9Y4B6 1507 aa20.4■□□□□ 0.86
TRAPPC4-201ENST00000359005 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
TRAPPC4-201ENST00000359005 UNC13AQ9UPW8 1703 aa20.3■□□□□ 0.84
TRAPPC4-201ENST00000359005 SCRIBQ14160 1630 aa20.15■□□□□ 0.82
TRAPPC4-201ENST00000359005 SHROOM4Q9ULL8 1493 aa19.94■□□□□ 0.78
TRAPPC4-201ENST00000359005 EIF4G1Q04637 1599 aaKnown RBP19.81■□□□□ 0.76
TRAPPC4-201ENST00000359005 CC2D2AQ9P2K1 1620 aa19.8■□□□□ 0.76
TRAPPC4-201ENST00000359005 CECR2Q9BXF3 1484 aa19.79■□□□□ 0.76
TRAPPC4-201ENST00000359005 NCAPD3P42695 1498 aa19.32■□□□□ 0.68
TRAPPC4-201ENST00000359005 ATAD2BQ9ULI0 1458 aa19.3■□□□□ 0.68
TRAPPC4-201ENST00000359005 SMARCA4P51532 1647 aa19.21■□□□□ 0.67
TRAPPC4-201ENST00000359005 MROH2BQ7Z745 1585 aa19.16■□□□□ 0.66
TRAPPC4-201ENST00000359005 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
TRAPPC4-201ENST00000359005 SMARCA2P51531 1590 aa19.11■□□□□ 0.65
TRAPPC4-201ENST00000359005 HMGXB3Q12766 1538 aa19.06■□□□□ 0.64
TRAPPC4-201ENST00000359005 BAZ1BQ9UIG0 1483 aaKnown RBP19.04■□□□□ 0.64
TRAPPC4-201ENST00000359005 PEG3Q9GZU2 1588 aa19.02■□□□□ 0.63
TRAPPC4-201ENST00000359005 NESP48681 1621 aa19.01■□□□□ 0.63
TRAPPC4-201ENST00000359005 ERCC6Q03468 1493 aa18.9■□□□□ 0.62
TRAPPC4-201ENST00000359005 RSF1Q96T23 1441 aaPredicted RBP18.88■□□□□ 0.61
TRAPPC4-201ENST00000359005 WIZO95785 1651 aa18.85■□□□□ 0.61
TRAPPC4-201ENST00000359005 CADPSQ9ULU8 1353 aa18.78■□□□□ 0.6
TRAPPC4-201ENST00000359005 SUPT5HO00267 1087 aaKnown RBP18.77■□□□□ 0.6
TRAPPC4-201ENST00000359005 CUX2O14529 1486 aa18.77■□□□□ 0.59
TRAPPC4-201ENST00000359005 DNAJC5Q9H3Z4 198 aa18.73■□□□□ 0.59
TRAPPC4-201ENST00000359005 LAMC3Q9Y6N6 1575 aa18.7■□□□□ 0.58
TRAPPC4-201ENST00000359005 PDS5BQ9NTI5 1447 aa18.68■□□□□ 0.58
TRAPPC4-201ENST00000359005 THOC2Q8NI27 1593 aaKnown RBP18.59■□□□□ 0.57
TRAPPC4-201ENST00000359005 TOP2AP11388 1531 aaKnown RBP18.59■□□□□ 0.57
TRAPPC4-201ENST00000359005 CFTRP13569 1480 aa18.57■□□□□ 0.56
TRAPPC4-201ENST00000359005 KIF21AQ7Z4S6 1674 aa18.54■□□□□ 0.56
TRAPPC4-201ENST00000359005 CCDC88BA6NC98 1476 aa18.51■□□□□ 0.55
TRAPPC4-201ENST00000359005 FANCD2Q9BXW9 1451 aa18.51■□□□□ 0.55
TRAPPC4-201ENST00000359005 MRC2Q9UBG0 1479 aa18.5■□□□□ 0.55
TRAPPC4-201ENST00000359005 CEP164Q9UPV0 1460 aa18.45■□□□□ 0.54
TRAPPC4-201ENST00000359005 WDR62O43379 1518 aa18.42■□□□□ 0.54
TRAPPC4-201ENST00000359005 URB2Q14146 1524 aaKnown RBP18.38■□□□□ 0.53
TRAPPC4-201ENST00000359005 TOPBP1Q92547 1522 aa18.17■□□□□ 0.5
TRAPPC4-201ENST00000359005 ZNF608Q9ULD9 1512 aaPredicted RBP18.17■□□□□ 0.5
TRAPPC4-201ENST00000359005 IFT140Q96RY7 1462 aa18.09■□□□□ 0.49
TRAPPC4-201ENST00000359005 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
TRAPPC4-201ENST00000359005 ABCC8Q09428 1581 aa18.04■□□□□ 0.48
TRAPPC4-201ENST00000359005 DNMBPQ6XZF7 1577 aa18.04■□□□□ 0.48
TRAPPC4-201ENST00000359005 PRDM2Q13029 1718 aa18.04■□□□□ 0.48
TRAPPC4-201ENST00000359005 AQRO60306 1485 aaKnown RBP eCLIP18.04■□□□□ 0.481e-6■■■■□ 24.3
TRAPPC4-201ENST00000359005 POLA1P09884 1462 aaPredicted RBP18.02■□□□□ 0.48
TRAPPC4-201ENST00000359005 RAD54L2Q9Y4B4 1467 aa18.02■□□□□ 0.48
TRAPPC4-201ENST00000359005 TRIM41Q8WV44 630 aa18■□□□□ 0.47
TRAPPC4-201ENST00000359005 CHIC1Q5VXU3 224 aa17.99■□□□□ 0.47
TRAPPC4-201ENST00000359005 TDRD9Q8NDG6 1382 aaKnown RBP17.98■□□□□ 0.47
TRAPPC4-201ENST00000359005 SOGA1O94964 1423 aa17.98■□□□□ 0.47
TRAPPC4-201ENST00000359005 CUX1P39880 1505 aa17.97■□□□□ 0.47
TRAPPC4-201ENST00000359005 TARBP1Q13395 1621 aaKnown RBP17.94■□□□□ 0.46
TRAPPC4-201ENST00000359005 FGD5Q6ZNL6 1462 aa17.92■□□□□ 0.46
TRAPPC4-201ENST00000359005 EIF4G3O43432 1585 aaKnown RBP17.89■□□□□ 0.45
TRAPPC4-201ENST00000359005 FBLN2P98095 1184 aa17.88■□□□□ 0.45
TRAPPC4-201ENST00000359005 SNAPC4Q5SXM2 1469 aa17.77■□□□□ 0.44
TRAPPC4-201ENST00000359005 CHMP7Q8WUX9 453 aaPredicted RBP17.75■□□□□ 0.43
TRAPPC4-201ENST00000359005 GRIN2BQ13224 1484 aa17.73■□□□□ 0.43
TRAPPC4-201ENST00000359005 WRNQ14191 1432 aaPredicted RBP eCLIP17.72■□□□□ 0.43
TRAPPC4-201ENST00000359005 CYB5RLQ6IPT4 315 aa17.72■□□□□ 0.43
TRAPPC4-201ENST00000359005 ARHGEF11O15085 1522 aa17.72■□□□□ 0.43
TRAPPC4-201ENST00000359005 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
TRAPPC4-201ENST00000359005 ABCA10Q8WWZ4 1543 aa17.71■□□□□ 0.43
TRAPPC4-201ENST00000359005 RIMBP3CA6NJZ7 1639 aa17.69■□□□□ 0.42
TRAPPC4-201ENST00000359005 RIMBP3BA6NNM3 1639 aa17.69■□□□□ 0.42
TRAPPC4-201ENST00000359005 RIMBP3Q9UFD9 1639 aa17.69■□□□□ 0.42
TRAPPC4-201ENST00000359005 SYNJ1O43426 1573 aa17.68■□□□□ 0.42
TRAPPC4-201ENST00000359005 MAGI1Q96QZ7 1491 aaPredicted RBP17.66■□□□□ 0.42
TRAPPC4-201ENST00000359005 CHD1O14646 1710 aa17.66■□□□□ 0.42
TRAPPC4-201ENST00000359005 SYNJ2O15056 1496 aa17.63■□□□□ 0.41
TRAPPC4-201ENST00000359005 WDR97A6NE52 1622 aa17.62■□□□□ 0.41
TRAPPC4-201ENST00000359005 TOP2BQ02880 1626 aa17.62■□□□□ 0.41
TRAPPC4-201ENST00000359005 ARAP1Q96P48 1450 aa17.6■□□□□ 0.41
TRAPPC4-201ENST00000359005 ABCA5Q8WWZ7 1642 aa17.59■□□□□ 0.41
TRAPPC4-201ENST00000359005 CLASP1Q7Z460 1538 aa17.57■□□□□ 0.4
TRAPPC4-201ENST00000359005 BIVM-ERCC5R4GMW8 1640 aa17.57■□□□□ 0.4
TRAPPC4-201ENST00000359005 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
TRAPPC4-201ENST00000359005 FHAD1B1AJZ9 1412 aa17.49■□□□□ 0.39
TRAPPC4-201ENST00000359005 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
TRAPPC4-201ENST00000359005 NUP160Q12769 1436 aa17.47■□□□□ 0.39
TRAPPC4-201ENST00000359005 IGF1RP08069 1367 aa17.46■□□□□ 0.39
TRAPPC4-201ENST00000359005 EEA1Q15075 1411 aa17.46■□□□□ 0.39
TRAPPC4-201ENST00000359005 ADAMTS12P58397 1594 aa17.45■□□□□ 0.38
TRAPPC4-201ENST00000359005 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
TRAPPC4-201ENST00000359005 CEP170Q5SW79 1584 aa17.42■□□□□ 0.38
TRAPPC4-201ENST00000359005 ERCC6L2Q5T890 1561 aa17.42■□□□□ 0.38
TRAPPC4-201ENST00000359005 TRHP20396 242 aaPredicted RBP17.39■□□□□ 0.37
TRAPPC4-201ENST00000359005 JPH4Q96JJ6 628 aa17.39■□□□□ 0.37
TRAPPC4-201ENST00000359005 KIF27Q86VH2 1401 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms