RNA–Protein interactions for RNA: ENST00000356534.7

CHRD-203, Transcript of chordin, humanhuman

TSL 1 (best)

Gene CHRD, Length 1,252 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRD-203ENST00000356534 NISCHQ9Y2I1 1504 aa49.79■■■■■ 5.56
CHRD-203ENST00000356534 CCDC180Q9P1Z9 1646 aa44.56■■■■■ 4.72
CHRD-203ENST00000356534 ABCC9O60706 1549 aa43.42■■■■■ 4.54
CHRD-203ENST00000356534 RB1CC1Q8TDY2 1594 aa41.91■■■■■ 4.3
CHRD-203ENST00000356534 NACADO15069 1562 aa41.81■■■■■ 4.28
CHRD-203ENST00000356534 MYO15BQ96JP2 1530 aa41.54■■■■■ 4.24
CHRD-203ENST00000356534 ZCCHC6Q5VYS8 1495 aaKnown RBP41.47■■■■■ 4.23
CHRD-203ENST00000356534 DCAF8L2P0C7V8 631 aa41.44■■■■■ 4.22
CHRD-203ENST00000356534 DCAF1Q9Y4B6 1507 aa41.29■■■■■ 4.2
CHRD-203ENST00000356534 UNC13AQ9UPW8 1703 aa41.02■■■■■ 4.16
CHRD-203ENST00000356534 BICRAQ9NZM4 1560 aa40.52■■■■■ 4.08
CHRD-203ENST00000356534 SCRIBQ14160 1630 aa40.45■■■■■ 4.07
CHRD-203ENST00000356534 PABPN1Q86U42 306 aaKnown RBP eCLIP40.4■■■■■ 4.061e-7■■■■□ 19.7
CHRD-203ENST00000356534 SHROOM4Q9ULL8 1493 aa40.29■■■■■ 4.04
CHRD-203ENST00000356534 DNAJC5BQ9UF47 199 aa39.76■■■■□ 3.96
CHRD-203ENST00000356534 EIF4G1Q04637 1599 aaKnown RBP39.51■■■■□ 3.92
CHRD-203ENST00000356534 CC2D2AQ9P2K1 1620 aa39.38■■■■□ 3.89
CHRD-203ENST00000356534 CECR2Q9BXF3 1484 aa39.08■■■■□ 3.85
CHRD-203ENST00000356534 SMARCA4P51532 1647 aa38.74■■■■□ 3.79
CHRD-203ENST00000356534 BAZ1AQ9NRL2 1556 aaPredicted RBP38.69■■■■□ 3.78
CHRD-203ENST00000356534 SMARCA2P51531 1590 aa38.54■■■■□ 3.76
CHRD-203ENST00000356534 NCAPD3P42695 1498 aa38.47■■■■□ 3.75
CHRD-203ENST00000356534 ATAD2BQ9ULI0 1458 aa38.45■■■■□ 3.75
CHRD-203ENST00000356534 HMGXB3Q12766 1538 aa38.4■■■■□ 3.74
CHRD-203ENST00000356534 PEG3Q9GZU2 1588 aa38.38■■■■□ 3.73
CHRD-203ENST00000356534 MROH2BQ7Z745 1585 aa38.31■■■■□ 3.72
CHRD-203ENST00000356534 BAZ1BQ9UIG0 1483 aaKnown RBP38.19■■■■□ 3.7
CHRD-203ENST00000356534 WIZO95785 1651 aa37.96■■■■□ 3.67
CHRD-203ENST00000356534 RSF1Q96T23 1441 aaPredicted RBP37.79■■■■□ 3.64
CHRD-203ENST00000356534 LAMC3Q9Y6N6 1575 aa37.61■■■■□ 3.61
CHRD-203ENST00000356534 TOP2AP11388 1531 aaKnown RBP37.6■■■■□ 3.61
CHRD-203ENST00000356534 ERCC6Q03468 1493 aa37.53■■■■□ 3.6
CHRD-203ENST00000356534 NESP48681 1621 aa37.5■■■■□ 3.59
CHRD-203ENST00000356534 CADPSQ9ULU8 1353 aa37.31■■■■□ 3.56
CHRD-203ENST00000356534 KIF21AQ7Z4S6 1674 aa37.28■■■■□ 3.56
CHRD-203ENST00000356534 PDS5BQ9NTI5 1447 aa37.27■■■■□ 3.56
CHRD-203ENST00000356534 CUX2O14529 1486 aa37.25■■■■□ 3.55
CHRD-203ENST00000356534 THOC2Q8NI27 1593 aaKnown RBP37.15■■■■□ 3.54
CHRD-203ENST00000356534 PRDM2Q13029 1718 aa37.13■■■■□ 3.54
CHRD-203ENST00000356534 CFTRP13569 1480 aa37.1■■■■□ 3.53
CHRD-203ENST00000356534 CCDC88BA6NC98 1476 aa37.02■■■■□ 3.52
CHRD-203ENST00000356534 CEP164Q9UPV0 1460 aa36.94■■■■□ 3.5
CHRD-203ENST00000356534 FANCD2Q9BXW9 1451 aa36.92■■■■□ 3.5
CHRD-203ENST00000356534 MRC2Q9UBG0 1479 aa36.9■■■■□ 3.5
CHRD-203ENST00000356534 WDR62O43379 1518 aa36.81■■■■□ 3.48
CHRD-203ENST00000356534 SUPT5HO00267 1087 aaKnown RBP36.63■■■■□ 3.45
CHRD-203ENST00000356534 URB2Q14146 1524 aaKnown RBP36.53■■■■□ 3.44
CHRD-203ENST00000356534 ABCC8Q09428 1581 aa36.42■■■■□ 3.42
CHRD-203ENST00000356534 DNAJC5Q9H3Z4 198 aa36.41■■■■□ 3.42
CHRD-203ENST00000356534 DNMBPQ6XZF7 1577 aa36.36■■■■□ 3.41
CHRD-203ENST00000356534 TOPBP1Q92547 1522 aa36.33■■■■□ 3.41
CHRD-203ENST00000356534 IFT140Q96RY7 1462 aa36.17■■■■□ 3.38
CHRD-203ENST00000356534 POLA1P09884 1462 aaPredicted RBP35.99■■■■□ 3.35
CHRD-203ENST00000356534 TARBP1Q13395 1621 aaKnown RBP35.98■■■■□ 3.35
CHRD-203ENST00000356534 CUX1P39880 1505 aa35.97■■■■□ 3.35
CHRD-203ENST00000356534 EIF4G3O43432 1585 aaKnown RBP35.92■■■■□ 3.34
CHRD-203ENST00000356534 ZNF608Q9ULD9 1512 aaPredicted RBP35.89■■■■□ 3.34
CHRD-203ENST00000356534 FGD5Q6ZNL6 1462 aa35.89■■■■□ 3.34
CHRD-203ENST00000356534 WDR97A6NE52 1622 aa35.86■■■■□ 3.33
CHRD-203ENST00000356534 SOGA1O94964 1423 aa35.8■■■■□ 3.32
CHRD-203ENST00000356534 BIVM-ERCC5R4GMW8 1640 aa35.78■■■■□ 3.32
CHRD-203ENST00000356534 RAD54L2Q9Y4B4 1467 aa35.75■■■■□ 3.31
CHRD-203ENST00000356534 TOP2BQ02880 1626 aa35.73■■■■□ 3.31
CHRD-203ENST00000356534 WRNQ14191 1432 aaPredicted RBP eCLIP35.71■■■■□ 3.31
CHRD-203ENST00000356534 AQRO60306 1485 aaKnown RBP eCLIP35.65■■■■□ 3.33e-7■■□□□ 11.6
CHRD-203ENST00000356534 SYNJ1O43426 1573 aa35.64■■■■□ 3.3
CHRD-203ENST00000356534 ABCA10Q8WWZ4 1543 aa35.57■■■■□ 3.29
CHRD-203ENST00000356534 PBRM1Q86U86 1689 aa35.55■■■■□ 3.28
CHRD-203ENST00000356534 CHD1O14646 1710 aa35.54■■■■□ 3.28
CHRD-203ENST00000356534 TDRD9Q8NDG6 1382 aaKnown RBP35.54■■■■□ 3.28
CHRD-203ENST00000356534 OSCARQ8IYS5 282 aa35.53■■■■□ 3.28
CHRD-203ENST00000356534 ABCA5Q8WWZ7 1642 aa35.5■■■■□ 3.27
CHRD-203ENST00000356534 GRIN2BQ13224 1484 aa35.48■■■■□ 3.27
CHRD-203ENST00000356534 MAGI1Q96QZ7 1491 aaPredicted RBP35.45■■■■□ 3.27
CHRD-203ENST00000356534 GAPVD1Q14C86 1478 aa35.44■■■■□ 3.26
CHRD-203ENST00000356534 SNAPC4Q5SXM2 1469 aa35.41■■■■□ 3.26
CHRD-203ENST00000356534 SYNJ2O15056 1496 aa35.28■■■■□ 3.24
CHRD-203ENST00000356534 FBLN2P98095 1184 aa35.24■■■■□ 3.23
CHRD-203ENST00000356534 ERICH3Q5RHP9 1530 aa35.2■■■■□ 3.23
CHRD-203ENST00000356534 CHMP7Q8WUX9 453 aaPredicted RBP35.18■■■■□ 3.22
CHRD-203ENST00000356534 ADAMTS12P58397 1594 aa35.17■■■■□ 3.22
CHRD-203ENST00000356534 RIMBP3CA6NJZ7 1639 aa35.1■■■■□ 3.21
CHRD-203ENST00000356534 RIMBP3BA6NNM3 1639 aa35.1■■■■□ 3.21
CHRD-203ENST00000356534 RIMBP3Q9UFD9 1639 aa35.1■■■■□ 3.21
CHRD-203ENST00000356534 CLASP1Q7Z460 1538 aa35.06■■■■□ 3.2
CHRD-203ENST00000356534 ARHGEF11O15085 1522 aa35.04■■■■□ 3.2
CHRD-203ENST00000356534 FHAD1B1AJZ9 1412 aa35.04■■■■□ 3.2
CHRD-203ENST00000356534 GRIN2AQ12879 1464 aa35.02■■■■□ 3.2
CHRD-203ENST00000356534 KIF27Q86VH2 1401 aa34.99■■■■□ 3.19
CHRD-203ENST00000356534 CUL7Q14999 1698 aa34.95■■■■□ 3.18
CHRD-203ENST00000356534 NUP160Q12769 1436 aa34.85■■■■□ 3.17
CHRD-203ENST00000356534 CEP170Q5SW79 1584 aa34.84■■■■□ 3.17
CHRD-203ENST00000356534 TRIM41Q8WV44 630 aa34.78■■■■□ 3.16
CHRD-203ENST00000356534 IGF1RP08069 1367 aa34.74■■■■□ 3.15
CHRD-203ENST00000356534 ARAP1Q96P48 1450 aa34.71■■■■□ 3.15
CHRD-203ENST00000356534 SHROOM2Q13796 1616 aa34.7■■■■□ 3.15
CHRD-203ENST00000356534 RUSC2Q8N2Y8 1516 aa34.66■■■■□ 3.14
CHRD-203ENST00000356534 CARMIL1Q5VZK9 1371 aa34.6■■■■□ 3.13
CHRD-203ENST00000356534 CYB5RLQ6IPT4 315 aa34.56■■■■□ 3.12
CHRD-203ENST00000356534 KIAA0586Q9BVV6 1533 aa34.49■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms