RNA–Protein interactions for RNA: ENST00000354473.4

VPS72-201, Transcript of vacuolar protein sorting 72 homolog, humanhuman

TSL 3

Gene VPS72, Length 1,347 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS72-201ENST00000354473 NISCHQ9Y2I1 1504 aa45.89■■■■■ 4.94
VPS72-201ENST00000354473 CCDC180Q9P1Z9 1646 aa40.88■■■■■ 4.13
VPS72-201ENST00000354473 ABCC9O60706 1549 aa40.06■■■■■ 4
VPS72-201ENST00000354473 RB1CC1Q8TDY2 1594 aa38.5■■■■□ 3.75
VPS72-201ENST00000354473 NACADO15069 1562 aa38.42■■■■□ 3.74
VPS72-201ENST00000354473 DCAF8L2P0C7V8 631 aa38.37■■■■□ 3.73
VPS72-201ENST00000354473 ZCCHC6Q5VYS8 1495 aaKnown RBP38.22■■■■□ 3.71
VPS72-201ENST00000354473 MYO15BQ96JP2 1530 aa38.13■■■■□ 3.7
VPS72-201ENST00000354473 DCAF1Q9Y4B6 1507 aa37.95■■■■□ 3.67
VPS72-201ENST00000354473 UNC13AQ9UPW8 1703 aa37.67■■■■□ 3.62
VPS72-201ENST00000354473 PABPN1Q86U42 306 aaKnown RBP eCLIP37.4■■■■□ 3.58
VPS72-201ENST00000354473 BICRAQ9NZM4 1560 aa37.34■■■■□ 3.57
VPS72-201ENST00000354473 SCRIBQ14160 1630 aa37.31■■■■□ 3.56
VPS72-201ENST00000354473 SHROOM4Q9ULL8 1493 aa36.91■■■■□ 3.5
VPS72-201ENST00000354473 DNAJC5BQ9UF47 199 aa36.8■■■■□ 3.48
VPS72-201ENST00000354473 EIF4G1Q04637 1599 aaKnown RBP36.36■■■■□ 3.41
VPS72-201ENST00000354473 CC2D2AQ9P2K1 1620 aa36.25■■■■□ 3.39
VPS72-201ENST00000354473 CECR2Q9BXF3 1484 aa36■■■■□ 3.35
VPS72-201ENST00000354473 SMARCA4P51532 1647 aa35.66■■■■□ 3.3
VPS72-201ENST00000354473 BAZ1AQ9NRL2 1556 aaPredicted RBP35.58■■■■□ 3.29
VPS72-201ENST00000354473 ATAD2BQ9ULI0 1458 aa35.45■■■■□ 3.27
VPS72-201ENST00000354473 NCAPD3P42695 1498 aa35.43■■■■□ 3.26
VPS72-201ENST00000354473 SMARCA2P51531 1590 aa35.42■■■■□ 3.26
VPS72-201ENST00000354473 MROH2BQ7Z745 1585 aa35.38■■■■□ 3.25
VPS72-201ENST00000354473 HMGXB3Q12766 1538 aa35.29■■■■□ 3.24
VPS72-201ENST00000354473 PEG3Q9GZU2 1588 aa35.28■■■■□ 3.24
VPS72-201ENST00000354473 BAZ1BQ9UIG0 1483 aaKnown RBP35.18■■■■□ 3.22
VPS72-201ENST00000354473 WIZO95785 1651 aa35.02■■■■□ 3.2
VPS72-201ENST00000354473 RSF1Q96T23 1441 aaPredicted RBP34.92■■■■□ 3.18
VPS72-201ENST00000354473 NESP48681 1621 aa34.65■■■■□ 3.14
VPS72-201ENST00000354473 TOP2AP11388 1531 aaKnown RBP34.63■■■■□ 3.13
VPS72-201ENST00000354473 ERCC6Q03468 1493 aa34.54■■■■□ 3.12
VPS72-201ENST00000354473 LAMC3Q9Y6N6 1575 aa34.53■■■■□ 3.12
VPS72-201ENST00000354473 CADPSQ9ULU8 1353 aa34.39■■■■□ 3.1
VPS72-201ENST00000354473 PDS5BQ9NTI5 1447 aa34.28■■■■□ 3.08
VPS72-201ENST00000354473 KIF21AQ7Z4S6 1674 aa34.26■■■■□ 3.08
VPS72-201ENST00000354473 CCDC88BA6NC98 1476 aa34.2■■■■□ 3.07
VPS72-201ENST00000354473 CUX2O14529 1486 aa34.19■■■■□ 3.06
VPS72-201ENST00000354473 CFTRP13569 1480 aa34.18■■■■□ 3.06
VPS72-201ENST00000354473 THOC2Q8NI27 1593 aaKnown RBP34.16■■■■□ 3.06
VPS72-201ENST00000354473 FANCD2Q9BXW9 1451 aa34.03■■■■□ 3.04
VPS72-201ENST00000354473 CEP164Q9UPV0 1460 aa34■■■■□ 3.03
VPS72-201ENST00000354473 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
VPS72-201ENST00000354473 SUPT5HO00267 1087 aaKnown RBP33.99■■■■□ 3.03
VPS72-201ENST00000354473 MRC2Q9UBG0 1479 aa33.97■■■■□ 3.03
VPS72-201ENST00000354473 WDR62O43379 1518 aa33.86■■■■□ 3.01
VPS72-201ENST00000354473 URB2Q14146 1524 aaKnown RBP33.7■■■□□ 2.99
VPS72-201ENST00000354473 TOPBP1Q92547 1522 aa33.48■■■□□ 2.95
VPS72-201ENST00000354473 DNMBPQ6XZF7 1577 aa33.44■■■□□ 2.94
VPS72-201ENST00000354473 ABCC8Q09428 1581 aa33.43■■■□□ 2.94
VPS72-201ENST00000354473 IFT140Q96RY7 1462 aa33.27■■■□□ 2.92
VPS72-201ENST00000354473 CUX1P39880 1505 aa33.21■■■□□ 2.91
VPS72-201ENST00000354473 DNAJC5Q9H3Z4 198 aa33.2■■■□□ 2.91
VPS72-201ENST00000354473 POLA1P09884 1462 aaPredicted RBP33.19■■■□□ 2.9
VPS72-201ENST00000354473 ZNF608Q9ULD9 1512 aaPredicted RBP33.15■■■□□ 2.9
VPS72-201ENST00000354473 TARBP1Q13395 1621 aaKnown RBP33.13■■■□□ 2.89
VPS72-201ENST00000354473 FGD5Q6ZNL6 1462 aa33.11■■■□□ 2.89
VPS72-201ENST00000354473 RAD54L2Q9Y4B4 1467 aa33.05■■■□□ 2.88
VPS72-201ENST00000354473 EIF4G3O43432 1585 aaKnown RBP33.04■■■□□ 2.88
VPS72-201ENST00000354473 SOGA1O94964 1423 aa33.03■■■□□ 2.88
VPS72-201ENST00000354473 WRNQ14191 1432 aaPredicted RBP eCLIP32.94■■■□□ 2.86
VPS72-201ENST00000354473 AQRO60306 1485 aaKnown RBP eCLIP32.94■■■□□ 2.864e-7■■■□□ 16.5
VPS72-201ENST00000354473 SYNJ1O43426 1573 aa32.9■■■□□ 2.86
VPS72-201ENST00000354473 TOP2BQ02880 1626 aa32.9■■■□□ 2.86
VPS72-201ENST00000354473 BIVM-ERCC5R4GMW8 1640 aa32.9■■■□□ 2.86
VPS72-201ENST00000354473 TDRD9Q8NDG6 1382 aaKnown RBP32.86■■■□□ 2.85
VPS72-201ENST00000354473 WDR97A6NE52 1622 aa32.86■■■□□ 2.85
VPS72-201ENST00000354473 ABCA10Q8WWZ4 1543 aa32.76■■■□□ 2.83
VPS72-201ENST00000354473 OSCARQ8IYS5 282 aa32.73■■■□□ 2.83
VPS72-201ENST00000354473 ABCA5Q8WWZ7 1642 aa32.68■■■□□ 2.82
VPS72-201ENST00000354473 GRIN2BQ13224 1484 aa32.66■■■□□ 2.82
VPS72-201ENST00000354473 GAPVD1Q14C86 1478 aa32.66■■■□□ 2.82
VPS72-201ENST00000354473 CHD1O14646 1710 aa32.66■■■□□ 2.82
VPS72-201ENST00000354473 SNAPC4Q5SXM2 1469 aa32.66■■■□□ 2.82
VPS72-201ENST00000354473 PBRM1Q86U86 1689 aa32.65■■■□□ 2.82
VPS72-201ENST00000354473 MAGI1Q96QZ7 1491 aaPredicted RBP32.6■■■□□ 2.81
VPS72-201ENST00000354473 FBLN2P98095 1184 aa32.56■■■□□ 2.8
VPS72-201ENST00000354473 SYNJ2O15056 1496 aa32.47■■■□□ 2.79
VPS72-201ENST00000354473 CHMP7Q8WUX9 453 aaPredicted RBP32.44■■■□□ 2.78
VPS72-201ENST00000354473 ADAMTS12P58397 1594 aa32.37■■■□□ 2.77
VPS72-201ENST00000354473 ERICH3Q5RHP9 1530 aa32.37■■■□□ 2.77
VPS72-201ENST00000354473 RIMBP3CA6NJZ7 1639 aa32.28■■■□□ 2.76
VPS72-201ENST00000354473 RIMBP3BA6NNM3 1639 aa32.28■■■□□ 2.76
VPS72-201ENST00000354473 RIMBP3Q9UFD9 1639 aa32.28■■■□□ 2.76
VPS72-201ENST00000354473 FHAD1B1AJZ9 1412 aa32.27■■■□□ 2.76
VPS72-201ENST00000354473 CLASP1Q7Z460 1538 aa32.27■■■□□ 2.76
VPS72-201ENST00000354473 GRIN2AQ12879 1464 aa32.26■■■□□ 2.75
VPS72-201ENST00000354473 KIF27Q86VH2 1401 aa32.25■■■□□ 2.75
VPS72-201ENST00000354473 ARHGEF11O15085 1522 aa32.25■■■□□ 2.75
VPS72-201ENST00000354473 TRIM41Q8WV44 630 aa32.12■■■□□ 2.73
VPS72-201ENST00000354473 CEP170Q5SW79 1584 aa32.12■■■□□ 2.73
VPS72-201ENST00000354473 IGF1RP08069 1367 aa32.11■■■□□ 2.73
VPS72-201ENST00000354473 NUP160Q12769 1436 aa32.1■■■□□ 2.73
VPS72-201ENST00000354473 CUL7Q14999 1698 aa32.1■■■□□ 2.73
VPS72-201ENST00000354473 ARAP1Q96P48 1450 aa31.98■■■□□ 2.71
VPS72-201ENST00000354473 RUSC2Q8N2Y8 1516 aa31.95■■■□□ 2.7
VPS72-201ENST00000354473 CARMIL1Q5VZK9 1371 aa31.93■■■□□ 2.7
VPS72-201ENST00000354473 CYB5RLQ6IPT4 315 aa31.91■■■□□ 2.7
VPS72-201ENST00000354473 SHROOM2Q13796 1616 aa31.9■■■□□ 2.7
VPS72-201ENST00000354473 ERCC6L2Q5T890 1561 aa31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 148.1 ms