RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
TRIM55-204ENST00000353317 CCDC180Q9P1Z9 1646 aa16.67■□□□□ 0.26
TRIM55-204ENST00000353317 ZCCHC6Q5VYS8 1495 aaKnown RBP16.12■□□□□ 0.17
TRIM55-204ENST00000353317 DCAF8L2P0C7V8 631 aa15.96■□□□□ 0.14
TRIM55-204ENST00000353317 ABCC9O60706 1549 aa15.92■□□□□ 0.14
TRIM55-204ENST00000353317 SHROOM4Q9ULL8 1493 aa15.79■□□□□ 0.12
TRIM55-204ENST00000353317 DCAF1Q9Y4B6 1507 aa15.79■□□□□ 0.12
TRIM55-204ENST00000353317 MYO15BQ96JP2 1530 aa15.58■□□□□ 0.08
TRIM55-204ENST00000353317 NACADO15069 1562 aa15.53■□□□□ 0.08
TRIM55-204ENST00000353317 SCRIBQ14160 1630 aa15.45■□□□□ 0.06
TRIM55-204ENST00000353317 RB1CC1Q8TDY2 1594 aa15.41■□□□□ 0.06
TRIM55-204ENST00000353317 UNC13AQ9UPW8 1703 aa15.26■□□□□ 0.03
TRIM55-204ENST00000353317 SUPT5HO00267 1087 aaKnown RBP15.15■□□□□ 0.02
TRIM55-204ENST00000353317 BICRAQ9NZM4 1560 aa15.08■□□□□ 0
TRIM55-204ENST00000353317 PABPN1Q86U42 306 aaKnown RBP eCLIP15.07■□□□□ 0
TRIM55-204ENST00000353317 CECR2Q9BXF3 1484 aa15.03■□□□□ -0
TRIM55-204ENST00000353317 RSF1Q96T23 1441 aaPredicted RBP14.93□□□□□ -0.02
TRIM55-204ENST00000353317 MROH2BQ7Z745 1585 aa14.91□□□□□ -0.02
TRIM55-204ENST00000353317 WIZO95785 1651 aa14.8□□□□□ -0.04
TRIM55-204ENST00000353317 BAZ1AQ9NRL2 1556 aaPredicted RBP14.78□□□□□ -0.04
TRIM55-204ENST00000353317 SMARCA4P51532 1647 aa14.77□□□□□ -0.05
TRIM55-204ENST00000353317 EIF4G1Q04637 1599 aaKnown RBP14.57□□□□□ -0.08
TRIM55-204ENST00000353317 PEG3Q9GZU2 1588 aa14.55□□□□□ -0.08
TRIM55-204ENST00000353317 ATAD2BQ9ULI0 1458 aa14.54□□□□□ -0.08
TRIM55-204ENST00000353317 TOP2AP11388 1531 aaKnown RBP14.53□□□□□ -0.08
TRIM55-204ENST00000353317 CHIC1Q5VXU3 224 aa14.48□□□□□ -0.09
TRIM55-204ENST00000353317 CCDC88BA6NC98 1476 aa14.46□□□□□ -0.1
TRIM55-204ENST00000353317 SMARCA2P51531 1590 aa14.45□□□□□ -0.1
TRIM55-204ENST00000353317 BAZ1BQ9UIG0 1483 aaKnown RBP14.41□□□□□ -0.1
TRIM55-204ENST00000353317 CC2D2AQ9P2K1 1620 aa14.38□□□□□ -0.11
TRIM55-204ENST00000353317 NCAPD3P42695 1498 aa14.38□□□□□ -0.11
TRIM55-204ENST00000353317 HMGXB3Q12766 1538 aa14.32□□□□□ -0.12
TRIM55-204ENST00000353317 DNAJC5BQ9UF47 199 aa14.25□□□□□ -0.13
TRIM55-204ENST00000353317 ABCC8Q09428 1581 aa14.2□□□□□ -0.14
TRIM55-204ENST00000353317 TRIM41Q8WV44 630 aa14.16□□□□□ -0.14
TRIM55-204ENST00000353317 HRCP23327 699 aa14.1□□□□□ -0.15
TRIM55-204ENST00000353317 CFTRP13569 1480 aa14.07□□□□□ -0.16
TRIM55-204ENST00000353317 NESP48681 1621 aa14.02□□□□□ -0.16
TRIM55-204ENST00000353317 CADPSQ9ULU8 1353 aa14.02□□□□□ -0.16
TRIM55-204ENST00000353317 SYNJ1O43426 1573 aa14.02□□□□□ -0.17
TRIM55-204ENST00000353317 LOC105371045A0A1W2PR82 267 aa14.01□□□□□ -0.17
TRIM55-204ENST00000353317 FAM9AQ8IZU1 332 aaPredicted RBP14.01□□□□□ -0.17
TRIM55-204ENST00000353317 WRNQ14191 1432 aaPredicted RBP eCLIP14.01□□□□□ -0.17
TRIM55-204ENST00000353317 PCGF6Q9BYE7 350 aa14□□□□□ -0.17
TRIM55-204ENST00000353317 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
TRIM55-204ENST00000353317 RUSC2Q8N2Y8 1516 aa13.92□□□□□ -0.18
TRIM55-204ENST00000353317 SOGA1O94964 1423 aa13.92□□□□□ -0.18
TRIM55-204ENST00000353317 CUX1P39880 1505 aa13.92□□□□□ -0.18
TRIM55-204ENST00000353317 TOP2BQ02880 1626 aa13.9□□□□□ -0.18
TRIM55-204ENST00000353317 EHMT2Q96KQ7 1210 aa13.89□□□□□ -0.19
TRIM55-204ENST00000353317 FANCD2Q9BXW9 1451 aa13.88□□□□□ -0.19
TRIM55-204ENST00000353317 BIVM-ERCC5R4GMW8 1640 aa13.88□□□□□ -0.19
TRIM55-204ENST00000353317 LAMC3Q9Y6N6 1575 aa13.86□□□□□ -0.19
TRIM55-204ENST00000353317 PPARGC1BQ86YN6 1023 aaKnown RBP13.82□□□□□ -0.2
TRIM55-204ENST00000353317 KIF21AQ7Z4S6 1674 aa13.81□□□□□ -0.2
TRIM55-204ENST00000353317 CEP164Q9UPV0 1460 aa13.75□□□□□ -0.21
TRIM55-204ENST00000353317 URB2Q14146 1524 aaKnown RBP13.75□□□□□ -0.21
TRIM55-204ENST00000353317 PDS5BQ9NTI5 1447 aa13.74□□□□□ -0.21
TRIM55-204ENST00000353317 CSRNP3Q8WYN3 585 aa13.74□□□□□ -0.21
TRIM55-204ENST00000353317 TOPBP1Q92547 1522 aa13.74□□□□□ -0.21
TRIM55-204ENST00000353317 FGD5Q6ZNL6 1462 aa13.74□□□□□ -0.21
TRIM55-204ENST00000353317 DNMBPQ6XZF7 1577 aa13.72□□□□□ -0.21
TRIM55-204ENST00000353317 RAD54L2Q9Y4B4 1467 aa13.69□□□□□ -0.22
TRIM55-204ENST00000353317 EEA1Q15075 1411 aa13.69□□□□□ -0.22
TRIM55-204ENST00000353317 POLA1P09884 1462 aaPredicted RBP13.68□□□□□ -0.22
TRIM55-204ENST00000353317 TRIM26Q12899 539 aaPredicted RBP13.67□□□□□ -0.22
TRIM55-204ENST00000353317 CUX2O14529 1486 aa13.64□□□□□ -0.23
TRIM55-204ENST00000353317 RAPGEF2Q9Y4G8 1499 aa13.61□□□□□ -0.23
TRIM55-204ENST00000353317 KIF27Q86VH2 1401 aa13.61□□□□□ -0.23
TRIM55-204ENST00000353317 MRC2Q9UBG0 1479 aa13.59□□□□□ -0.23
TRIM55-204ENST00000353317 KIF21BO75037 1637 aa13.59□□□□□ -0.23
TRIM55-204ENST00000353317 IGF1RP08069 1367 aa13.58□□□□□ -0.23
TRIM55-204ENST00000353317 ABCA10Q8WWZ4 1543 aa13.58□□□□□ -0.24
TRIM55-204ENST00000353317 PRXQ9BXM0 1461 aa13.57□□□□□ -0.24
TRIM55-204ENST00000353317 WDR97A6NE52 1622 aa13.57□□□□□ -0.24
TRIM55-204ENST00000353317 GOLGA3Q08378 1498 aa13.57□□□□□ -0.24
TRIM55-204ENST00000353317 UBTFP17480 764 aaKnown RBP13.57□□□□□ -0.24
TRIM55-204ENST00000353317 ERCC6Q03468 1493 aa13.56□□□□□ -0.24
TRIM55-204ENST00000353317 TDRD9Q8NDG6 1382 aaKnown RBP13.55□□□□□ -0.24
TRIM55-204ENST00000353317 TARBP1Q13395 1621 aaKnown RBP13.55□□□□□ -0.24
TRIM55-204ENST00000353317 TNIKQ9UKE5 1360 aa13.54□□□□□ -0.24
TRIM55-204ENST00000353317 THOC2Q8NI27 1593 aaKnown RBP13.54□□□□□ -0.24
TRIM55-204ENST00000353317 WDR62O43379 1518 aa13.53□□□□□ -0.24
TRIM55-204ENST00000353317 CEP162Q5TB80 1403 aa13.51□□□□□ -0.25
TRIM55-204ENST00000353317 ABCA5Q8WWZ7 1642 aa13.49□□□□□ -0.25
TRIM55-204ENST00000353317 ERICH3Q5RHP9 1530 aa13.48□□□□□ -0.25
TRIM55-204ENST00000353317 CARMIL1Q5VZK9 1371 aa13.48□□□□□ -0.25
TRIM55-204ENST00000353317 ZNF608Q9ULD9 1512 aaPredicted RBP13.47□□□□□ -0.25
TRIM55-204ENST00000353317 AQRO60306 1485 aaKnown RBP eCLIP13.47□□□□□ -0.25
TRIM55-204ENST00000353317 RANGAP1P46060 587 aaPredicted RBP13.46□□□□□ -0.25
TRIM55-204ENST00000353317 GAPVD1Q14C86 1478 aa13.46□□□□□ -0.26
TRIM55-204ENST00000353317 ZEB1P37275 1124 aaPredicted RBP13.41□□□□□ -0.26
TRIM55-204ENST00000353317 IFT140Q96RY7 1462 aa13.41□□□□□ -0.26
TRIM55-204ENST00000353317 PBRM1Q86U86 1689 aa13.4□□□□□ -0.26
TRIM55-204ENST00000353317 CLIP1P30622 1438 aa13.39□□□□□ -0.27
TRIM55-204ENST00000353317 CUL7Q14999 1698 aa13.38□□□□□ -0.27
TRIM55-204ENST00000353317 EIF4G3O43432 1585 aaKnown RBP13.36□□□□□ -0.27
TRIM55-204ENST00000353317 GRIN2BQ13224 1484 aa13.32□□□□□ -0.28
TRIM55-204ENST00000353317 ARAP1Q96P48 1450 aa13.31□□□□□ -0.28
TRIM55-204ENST00000353317 ARHGAP35Q9NRY4 1499 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms