RNA–Protein interactions for RNA: ENST00000344550.4

CEACAM3-201, Transcript of carcinoembryonic antigen related cell adhesion molecule 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CEACAM3, Length 1,022 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CEACAM3-201ENST00000344550 NISCHQ9Y2I1 1504 aa49.37■■■■■ 5.49
CEACAM3-201ENST00000344550 CCDC180Q9P1Z9 1646 aa44.1■■■■■ 4.65
CEACAM3-201ENST00000344550 ABCC9O60706 1549 aa43.42■■■■■ 4.54
CEACAM3-201ENST00000344550 RB1CC1Q8TDY2 1594 aa41.72■■■■■ 4.27
CEACAM3-201ENST00000344550 NACADO15069 1562 aa41.62■■■■■ 4.25
CEACAM3-201ENST00000344550 MYO15BQ96JP2 1530 aa41.34■■■■■ 4.21
CEACAM3-201ENST00000344550 DCAF8L2P0C7V8 631 aa41.28■■■■■ 4.2
CEACAM3-201ENST00000344550 ZCCHC6Q5VYS8 1495 aaKnown RBP41.02■■■■■ 4.16
CEACAM3-201ENST00000344550 DCAF1Q9Y4B6 1507 aa40.95■■■■■ 4.15
CEACAM3-201ENST00000344550 UNC13AQ9UPW8 1703 aa40.59■■■■■ 4.09
CEACAM3-201ENST00000344550 PABPN1Q86U42 306 aaKnown RBP eCLIP40.49■■■■■ 4.07
CEACAM3-201ENST00000344550 BICRAQ9NZM4 1560 aa40.39■■■■■ 4.06
CEACAM3-201ENST00000344550 DNAJC5BQ9UF47 199 aa40.25■■■■■ 4.03
CEACAM3-201ENST00000344550 SHROOM4Q9ULL8 1493 aa40.18■■■■■ 4.02
CEACAM3-201ENST00000344550 SCRIBQ14160 1630 aa40.03■■■■■ 4
CEACAM3-201ENST00000344550 EIF4G1Q04637 1599 aaKnown RBP39.38■■■■□ 3.9
CEACAM3-201ENST00000344550 CC2D2AQ9P2K1 1620 aa39.3■■■■□ 3.88
CEACAM3-201ENST00000344550 CECR2Q9BXF3 1484 aa39.15■■■■□ 3.86
CEACAM3-201ENST00000344550 NCAPD3P42695 1498 aa38.42■■■■□ 3.74
CEACAM3-201ENST00000344550 SMARCA4P51532 1647 aa38.34■■■■□ 3.73
CEACAM3-201ENST00000344550 BAZ1AQ9NRL2 1556 aaPredicted RBP38.32■■■■□ 3.73
CEACAM3-201ENST00000344550 ATAD2BQ9ULI0 1458 aa38.3■■■■□ 3.72
CEACAM3-201ENST00000344550 SMARCA2P51531 1590 aa38.28■■■■□ 3.72
CEACAM3-201ENST00000344550 HMGXB3Q12766 1538 aa38.16■■■■□ 3.7
CEACAM3-201ENST00000344550 PEG3Q9GZU2 1588 aa38.1■■■■□ 3.69
CEACAM3-201ENST00000344550 MROH2BQ7Z745 1585 aa37.95■■■■□ 3.67
CEACAM3-201ENST00000344550 BAZ1BQ9UIG0 1483 aaKnown RBP37.94■■■■□ 3.66
CEACAM3-201ENST00000344550 ERCC6Q03468 1493 aa37.53■■■■□ 3.6
CEACAM3-201ENST00000344550 WIZO95785 1651 aa37.47■■■■□ 3.59
CEACAM3-201ENST00000344550 LAMC3Q9Y6N6 1575 aa37.44■■■■□ 3.58
CEACAM3-201ENST00000344550 RSF1Q96T23 1441 aaPredicted RBP37.43■■■■□ 3.58
CEACAM3-201ENST00000344550 NESP48681 1621 aa37.42■■■■□ 3.58
CEACAM3-201ENST00000344550 CUX2O14529 1486 aa37.39■■■■□ 3.58
CEACAM3-201ENST00000344550 CADPSQ9ULU8 1353 aa37.25■■■■□ 3.55
CEACAM3-201ENST00000344550 PDS5BQ9NTI5 1447 aa37.24■■■■□ 3.55
CEACAM3-201ENST00000344550 TOP2AP11388 1531 aaKnown RBP37.15■■■■□ 3.54
CEACAM3-201ENST00000344550 THOC2Q8NI27 1593 aaKnown RBP37■■■■□ 3.51
CEACAM3-201ENST00000344550 KIF21AQ7Z4S6 1674 aa36.96■■■■□ 3.51
CEACAM3-201ENST00000344550 CFTRP13569 1480 aa36.94■■■■□ 3.5
CEACAM3-201ENST00000344550 MRC2Q9UBG0 1479 aa36.81■■■■□ 3.48
CEACAM3-201ENST00000344550 CEP164Q9UPV0 1460 aa36.76■■■■□ 3.48
CEACAM3-201ENST00000344550 FANCD2Q9BXW9 1451 aa36.75■■■■□ 3.47
CEACAM3-201ENST00000344550 DNAJC5Q9H3Z4 198 aa36.75■■■■□ 3.47
CEACAM3-201ENST00000344550 WDR62O43379 1518 aa36.7■■■■□ 3.47
CEACAM3-201ENST00000344550 CCDC88BA6NC98 1476 aa36.7■■■■□ 3.47
CEACAM3-201ENST00000344550 PRDM2Q13029 1718 aa36.52■■■■□ 3.44
CEACAM3-201ENST00000344550 URB2Q14146 1524 aaKnown RBP36.38■■■■□ 3.41
CEACAM3-201ENST00000344550 ABCC8Q09428 1581 aa36.24■■■■□ 3.39
CEACAM3-201ENST00000344550 TOPBP1Q92547 1522 aa36.11■■■■□ 3.37
CEACAM3-201ENST00000344550 IFT140Q96RY7 1462 aa36.05■■■■□ 3.36
CEACAM3-201ENST00000344550 DNMBPQ6XZF7 1577 aa36.05■■■■□ 3.36
CEACAM3-201ENST00000344550 SUPT5HO00267 1087 aaKnown RBP36.03■■■■□ 3.36
CEACAM3-201ENST00000344550 ZNF608Q9ULD9 1512 aaPredicted RBP35.8■■■■□ 3.32
CEACAM3-201ENST00000344550 OSCARQ8IYS5 282 aa35.77■■■■□ 3.32
CEACAM3-201ENST00000344550 POLA1P09884 1462 aaPredicted RBP35.77■■■■□ 3.32
CEACAM3-201ENST00000344550 TARBP1Q13395 1621 aaKnown RBP35.74■■■■□ 3.31
CEACAM3-201ENST00000344550 SOGA1O94964 1423 aa35.66■■■■□ 3.3
CEACAM3-201ENST00000344550 EIF4G3O43432 1585 aaKnown RBP35.65■■■■□ 3.3
CEACAM3-201ENST00000344550 CUX1P39880 1505 aa35.63■■■■□ 3.29
CEACAM3-201ENST00000344550 FGD5Q6ZNL6 1462 aa35.6■■■■□ 3.29
CEACAM3-201ENST00000344550 WDR97A6NE52 1622 aa35.59■■■■□ 3.29
CEACAM3-201ENST00000344550 AQRO60306 1485 aaKnown RBP eCLIP35.56■■■■□ 3.28
CEACAM3-201ENST00000344550 RAD54L2Q9Y4B4 1467 aa35.55■■■■□ 3.28
CEACAM3-201ENST00000344550 TDRD9Q8NDG6 1382 aaKnown RBP35.44■■■■□ 3.26
CEACAM3-201ENST00000344550 ABCA10Q8WWZ4 1543 aa35.32■■■■□ 3.24
CEACAM3-201ENST00000344550 WRNQ14191 1432 aaPredicted RBP eCLIP35.32■■■■□ 3.24
CEACAM3-201ENST00000344550 GRIN2BQ13224 1484 aa35.31■■■■□ 3.24
CEACAM3-201ENST00000344550 MAGI1Q96QZ7 1491 aaPredicted RBP35.29■■■■□ 3.24
CEACAM3-201ENST00000344550 TOP2BQ02880 1626 aa35.27■■■■□ 3.24
CEACAM3-201ENST00000344550 BIVM-ERCC5R4GMW8 1640 aa35.24■■■■□ 3.23
CEACAM3-201ENST00000344550 CHD1O14646 1710 aa35.23■■■■□ 3.23
CEACAM3-201ENST00000344550 GAPVD1Q14C86 1478 aa35.22■■■■□ 3.23
CEACAM3-201ENST00000344550 SNAPC4Q5SXM2 1469 aa35.22■■■■□ 3.23
CEACAM3-201ENST00000344550 FBLN2P98095 1184 aa35.21■■■■□ 3.23
CEACAM3-201ENST00000344550 TRIM41Q8WV44 630 aa35.16■■■■□ 3.22
CEACAM3-201ENST00000344550 CHMP7Q8WUX9 453 aaPredicted RBP35.15■■■■□ 3.22
CEACAM3-201ENST00000344550 ABCA5Q8WWZ7 1642 aa35.14■■■■□ 3.22
CEACAM3-201ENST00000344550 SYNJ1O43426 1573 aa35.14■■■■□ 3.22
CEACAM3-201ENST00000344550 SYNJ2O15056 1496 aa35.13■■■■□ 3.21
CEACAM3-201ENST00000344550 RIMBP3CA6NJZ7 1639 aa35.1■■■■□ 3.21
CEACAM3-201ENST00000344550 RIMBP3BA6NNM3 1639 aa35.1■■■■□ 3.21
CEACAM3-201ENST00000344550 RIMBP3Q9UFD9 1639 aa35.1■■■■□ 3.21
CEACAM3-201ENST00000344550 ARHGEF11O15085 1522 aa35.09■■■■□ 3.21
CEACAM3-201ENST00000344550 PBRM1Q86U86 1689 aa35.08■■■■□ 3.21
CEACAM3-201ENST00000344550 CLASP1Q7Z460 1538 aa34.96■■■■□ 3.19
CEACAM3-201ENST00000344550 ERICH3Q5RHP9 1530 aa34.91■■■■□ 3.18
CEACAM3-201ENST00000344550 FHAD1B1AJZ9 1412 aa34.85■■■■□ 3.17
CEACAM3-201ENST00000344550 ADAMTS12P58397 1594 aa34.83■■■■□ 3.17
CEACAM3-201ENST00000344550 GRIN2AQ12879 1464 aa34.82■■■■□ 3.16
CEACAM3-201ENST00000344550 CYB5RLQ6IPT4 315 aa34.78■■■■□ 3.16
CEACAM3-201ENST00000344550 ARAP1Q96P48 1450 aa34.76■■■■□ 3.15
CEACAM3-201ENST00000344550 NUP160Q12769 1436 aa34.72■■■■□ 3.15
CEACAM3-201ENST00000344550 KIF27Q86VH2 1401 aa34.65■■■■□ 3.14
CEACAM3-201ENST00000344550 CEP170Q5SW79 1584 aa34.59■■■■□ 3.13
CEACAM3-201ENST00000344550 IGF1RP08069 1367 aa34.55■■■■□ 3.12
CEACAM3-201ENST00000344550 SHROOM2Q13796 1616 aa34.48■■■■□ 3.11
CEACAM3-201ENST00000344550 CUL7Q14999 1698 aa34.46■■■■□ 3.11
CEACAM3-201ENST00000344550 JPH4Q96JJ6 628 aa34.37■■■■□ 3.09
CEACAM3-201ENST00000344550 CARMIL1Q5VZK9 1371 aa34.32■■■■□ 3.08
CEACAM3-201ENST00000344550 RUSC2Q8N2Y8 1516 aa34.31■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms