RNA–Protein interactions for RNA: ENST00000343258.8

VAV3-201, Transcript of vav guanine nucleotide exchange factor 3, humanhuman

TSL 1 (best)

Gene VAV3, Length 2,552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAV3-201ENST00000343258 NISCHQ9Y2I1 1504 aa11□□□□□ -0.65
VAV3-201ENST00000343258 AEBP2Q6ZN18 517 aaPredicted RBP10.86□□□□□ -0.67
VAV3-201ENST00000343258 CHIC1Q5VXU3 224 aa10.55□□□□□ -0.72
VAV3-201ENST00000343258 CCDC180Q9P1Z9 1646 aa9.69□□□□□ -0.86
VAV3-201ENST00000343258 ABCC9O60706 1549 aa9.66□□□□□ -0.86
VAV3-201ENST00000343258 PHF23Q9BUL5 403 aaPredicted RBP9.41□□□□□ -0.9
VAV3-201ENST00000343258 DCAF8L2P0C7V8 631 aa9.3□□□□□ -0.92
VAV3-201ENST00000343258 RB1CC1Q8TDY2 1594 aa9.17□□□□□ -0.94
VAV3-201ENST00000343258 NACADO15069 1562 aa9.15□□□□□ -0.94
VAV3-201ENST00000343258 ZCCHC6Q5VYS8 1495 aaKnown RBP9.15□□□□□ -0.94
VAV3-201ENST00000343258 PABPN1Q86U42 306 aaKnown RBP eCLIP9.07□□□□□ -0.96
VAV3-201ENST00000343258 MYO15BQ96JP2 1530 aa9.06□□□□□ -0.96
VAV3-201ENST00000343258 DCAF1Q9Y4B6 1507 aa9.03□□□□□ -0.96
VAV3-201ENST00000343258 SENP3Q9H4L4 574 aaPredicted RBP9.01□□□□□ -0.97
VAV3-201ENST00000343258 UNC13AQ9UPW8 1703 aa8.98□□□□□ -0.97
VAV3-201ENST00000343258 BICRAQ9NZM4 1560 aa8.96□□□□□ -0.97
VAV3-201ENST00000343258 DNAJC5BQ9UF47 199 aa8.96□□□□□ -0.97
VAV3-201ENST00000343258 SCRIBQ14160 1630 aa8.95□□□□□ -0.98
VAV3-201ENST00000343258 POTEDQ86YR6 584 aa8.82□□□□□ -1
VAV3-201ENST00000343258 SHROOM4Q9ULL8 1493 aa8.79□□□□□ -1
VAV3-201ENST00000343258 EIF4G1Q04637 1599 aaKnown RBP8.71□□□□□ -1.02
VAV3-201ENST00000343258 CC2D2AQ9P2K1 1620 aa8.68□□□□□ -1.02
VAV3-201ENST00000343258 CECR2Q9BXF3 1484 aa8.65□□□□□ -1.03
VAV3-201ENST00000343258 PLPPR3Q6T4P5 718 aa8.57□□□□□ -1.04
VAV3-201ENST00000343258 SMARCA4P51532 1647 aa8.52□□□□□ -1.04
VAV3-201ENST00000343258 MROH2BQ7Z745 1585 aa8.52□□□□□ -1.05
VAV3-201ENST00000343258 ATAD2BQ9ULI0 1458 aa8.51□□□□□ -1.05
VAV3-201ENST00000343258 BAZ1AQ9NRL2 1556 aaPredicted RBP8.49□□□□□ -1.05
VAV3-201ENST00000343258 NCAPD3P42695 1498 aa8.49□□□□□ -1.05
VAV3-201ENST00000343258 FOXD1Q16676 465 aa8.48□□□□□ -1.05
VAV3-201ENST00000343258 SMARCA2P51531 1590 aa8.44□□□□□ -1.06
VAV3-201ENST00000343258 BAZ1BQ9UIG0 1483 aaKnown RBP8.42□□□□□ -1.06
VAV3-201ENST00000343258 PEG3Q9GZU2 1588 aa8.41□□□□□ -1.06
VAV3-201ENST00000343258 RSF1Q96T23 1441 aaPredicted RBP8.41□□□□□ -1.06
VAV3-201ENST00000343258 HMGXB3Q12766 1538 aa8.41□□□□□ -1.06
VAV3-201ENST00000343258 WIZO95785 1651 aa8.4□□□□□ -1.06
VAV3-201ENST00000343258 NESP48681 1621 aa8.37□□□□□ -1.07
VAV3-201ENST00000343258 PPP6R1Q9UPN7 881 aa8.32□□□□□ -1.08
VAV3-201ENST00000343258 ADRA2BP18089 450 aa8.3□□□□□ -1.08
VAV3-201ENST00000343258 ERCC6Q03468 1493 aa8.28□□□□□ -1.08
VAV3-201ENST00000343258 TOP2AP11388 1531 aaKnown RBP8.27□□□□□ -1.09
VAV3-201ENST00000343258 CADPSQ9ULU8 1353 aa8.26□□□□□ -1.09
VAV3-201ENST00000343258 SUPT5HO00267 1087 aaKnown RBP8.24□□□□□ -1.09
VAV3-201ENST00000343258 LAMC3Q9Y6N6 1575 aa8.23□□□□□ -1.09
VAV3-201ENST00000343258 CCDC88BA6NC98 1476 aa8.23□□□□□ -1.09
VAV3-201ENST00000343258 MSH5O43196 834 aa8.22□□□□□ -1.09
VAV3-201ENST00000343258 PDS5BQ9NTI5 1447 aa8.2□□□□□ -1.1
VAV3-201ENST00000343258 CFTRP13569 1480 aa8.2□□□□□ -1.1
VAV3-201ENST00000343258 KIF21AQ7Z4S6 1674 aa8.19□□□□□ -1.1
VAV3-201ENST00000343258 THOC2Q8NI27 1593 aaKnown RBP8.17□□□□□ -1.1
VAV3-201ENST00000343258 FANCD2Q9BXW9 1451 aa8.17□□□□□ -1.1
VAV3-201ENST00000343258 CUX2O14529 1486 aa8.15□□□□□ -1.1
VAV3-201ENST00000343258 CEP164Q9UPV0 1460 aa8.13□□□□□ -1.11
VAV3-201ENST00000343258 MRC2Q9UBG0 1479 aa8.13□□□□□ -1.11
VAV3-201ENST00000343258 URB2Q14146 1524 aaKnown RBP8.1□□□□□ -1.11
VAV3-201ENST00000343258 WDR62O43379 1518 aa8.09□□□□□ -1.11
VAV3-201ENST00000343258 PRDM2Q13029 1718 aa8.03□□□□□ -1.12
VAV3-201ENST00000343258 TOPBP1Q92547 1522 aa8.03□□□□□ -1.12
VAV3-201ENST00000343258 PIAS4Q8N2W9 510 aaPredicted RBP8.01□□□□□ -1.13
VAV3-201ENST00000343258 DNAJC5Q9H3Z4 198 aa8.01□□□□□ -1.13
VAV3-201ENST00000343258 ZNF608Q9ULD9 1512 aaPredicted RBP8□□□□□ -1.13
VAV3-201ENST00000343258 DNMBPQ6XZF7 1577 aa7.98□□□□□ -1.13
VAV3-201ENST00000343258 CUX1P39880 1505 aa7.98□□□□□ -1.13
VAV3-201ENST00000343258 RAD54L2Q9Y4B4 1467 aa7.97□□□□□ -1.13
VAV3-201ENST00000343258 POLA1P09884 1462 aaPredicted RBP7.97□□□□□ -1.13
VAV3-201ENST00000343258 AQRO60306 1485 aaKnown RBP eCLIP7.95□□□□□ -1.14
VAV3-201ENST00000343258 IFT140Q96RY7 1462 aa7.95□□□□□ -1.14
VAV3-201ENST00000343258 ABCC8Q09428 1581 aa7.95□□□□□ -1.14
VAV3-201ENST00000343258 FGD5Q6ZNL6 1462 aa7.94□□□□□ -1.14
VAV3-201ENST00000343258 TDRD9Q8NDG6 1382 aaKnown RBP7.94□□□□□ -1.14
VAV3-201ENST00000343258 SOGA1O94964 1423 aa7.93□□□□□ -1.14
VAV3-201ENST00000343258 TARBP1Q13395 1621 aaKnown RBP7.93□□□□□ -1.14
VAV3-201ENST00000343258 WRNQ14191 1432 aaPredicted RBP eCLIP7.9□□□□□ -1.14
VAV3-201ENST00000343258 SYNJ1O43426 1573 aa7.9□□□□□ -1.14
VAV3-201ENST00000343258 EIF4G3O43432 1585 aaKnown RBP7.9□□□□□ -1.14
VAV3-201ENST00000343258 PELP1Q8IZL8 1130 aaKnown RBP7.88□□□□□ -1.15
VAV3-201ENST00000343258 FBLN2P98095 1184 aa7.87□□□□□ -1.15
VAV3-201ENST00000343258 OSCARQ8IYS5 282 aa7.87□□□□□ -1.15
VAV3-201ENST00000343258 TOP2BQ02880 1626 aa7.86□□□□□ -1.15
VAV3-201ENST00000343258 SNAPC4Q5SXM2 1469 aa7.84□□□□□ -1.15
VAV3-201ENST00000343258 ABCA10Q8WWZ4 1543 aa7.84□□□□□ -1.15
VAV3-201ENST00000343258 BIVM-ERCC5R4GMW8 1640 aa7.84□□□□□ -1.16
VAV3-201ENST00000343258 GAPVD1Q14C86 1478 aa7.83□□□□□ -1.16
VAV3-201ENST00000343258 WDR97A6NE52 1622 aa7.83□□□□□ -1.16
VAV3-201ENST00000343258 GRIN2BQ13224 1484 aa7.82□□□□□ -1.16
VAV3-201ENST00000343258 CHMP7Q8WUX9 453 aaPredicted RBP7.8□□□□□ -1.16
VAV3-201ENST00000343258 ABCA5Q8WWZ7 1642 aa7.8□□□□□ -1.16
VAV3-201ENST00000343258 CHD1O14646 1710 aa7.8□□□□□ -1.16
VAV3-201ENST00000343258 TRIM41Q8WV44 630 aa7.78□□□□□ -1.16
VAV3-201ENST00000343258 MAGI1Q96QZ7 1491 aaPredicted RBP7.78□□□□□ -1.16
VAV3-201ENST00000343258 SYNJ2O15056 1496 aa7.77□□□□□ -1.17
VAV3-201ENST00000343258 PBRM1Q86U86 1689 aa7.77□□□□□ -1.17
VAV3-201ENST00000343258 ARHGEF11O15085 1522 aa7.74□□□□□ -1.17
VAV3-201ENST00000343258 IGF1RP08069 1367 aa7.74□□□□□ -1.17
VAV3-201ENST00000343258 RUSC2Q8N2Y8 1516 aa7.74□□□□□ -1.17
VAV3-201ENST00000343258 ADAMTS12P58397 1594 aa7.74□□□□□ -1.17
VAV3-201ENST00000343258 GRIN2AQ12879 1464 aa7.73□□□□□ -1.17
VAV3-201ENST00000343258 RIMBP3CA6NJZ7 1639 aa7.73□□□□□ -1.17
VAV3-201ENST00000343258 RIMBP3BA6NNM3 1639 aa7.73□□□□□ -1.17
VAV3-201ENST00000343258 RIMBP3Q9UFD9 1639 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms