RNA–Protein interactions for RNA: ENST00000342503.8

RTN1-202, Transcript of reticulon 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RTN1, Length 1,703 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-202ENST00000342503 NISCHQ9Y2I1 1504 aa44.63■■■■■ 4.73
RTN1-202ENST00000342503 CCDC180Q9P1Z9 1646 aa38.76■■■■□ 3.8
RTN1-202ENST00000342503 ZCCHC6Q5VYS8 1495 aaKnown RBP37.54■■■■□ 3.6
RTN1-202ENST00000342503 DCAF1Q9Y4B6 1507 aa36.84■■■■□ 3.49
RTN1-202ENST00000342503 DCAF8L2P0C7V8 631 aa36.82■■■■□ 3.49
RTN1-202ENST00000342503 SHROOM4Q9ULL8 1493 aa36.72■■■■□ 3.47
RTN1-202ENST00000342503 ABCC9O60706 1549 aa36.43■■■■□ 3.42
RTN1-202ENST00000342503 MYO15BQ96JP2 1530 aa36.26■■■■□ 3.4
RTN1-202ENST00000342503 NACADO15069 1562 aa36■■■■□ 3.35
RTN1-202ENST00000342503 SCRIBQ14160 1630 aa35.77■■■■□ 3.32
RTN1-202ENST00000342503 RB1CC1Q8TDY2 1594 aa35.64■■■■□ 3.3
RTN1-202ENST00000342503 SUPT5HO00267 1087 aaKnown RBP35.47■■■■□ 3.27
RTN1-202ENST00000342503 UNC13AQ9UPW8 1703 aa35.06■■■■□ 3.2
RTN1-202ENST00000342503 RSF1Q96T23 1441 aaPredicted RBP34.75■■■■□ 3.15
RTN1-202ENST00000342503 CECR2Q9BXF3 1484 aa34.71■■■■□ 3.15
RTN1-202ENST00000342503 BICRAQ9NZM4 1560 aa34.61■■■■□ 3.13
RTN1-202ENST00000342503 MROH2BQ7Z745 1585 aa34.53■■■■□ 3.12
RTN1-202ENST00000342503 PABPN1Q86U42 306 aaKnown RBP eCLIP34.44■■■■□ 3.1
RTN1-202ENST00000342503 BAZ1AQ9NRL2 1556 aaPredicted RBP34.42■■■■□ 3.1
RTN1-202ENST00000342503 WIZO95785 1651 aa34.31■■■■□ 3.08
RTN1-202ENST00000342503 SMARCA4P51532 1647 aa34.27■■■■□ 3.08
RTN1-202ENST00000342503 CHIC1Q5VXU3 224 aa34.09■■■■□ 3.05
RTN1-202ENST00000342503 TOP2AP11388 1531 aaKnown RBP33.89■■■■□ 3.02
RTN1-202ENST00000342503 PEG3Q9GZU2 1588 aa33.78■■■■□ 3
RTN1-202ENST00000342503 SMARCA2P51531 1590 aa33.61■■■□□ 2.97
RTN1-202ENST00000342503 ATAD2BQ9ULI0 1458 aa33.59■■■□□ 2.97
RTN1-202ENST00000342503 CCDC88BA6NC98 1476 aa33.57■■■□□ 2.97
RTN1-202ENST00000342503 EIF4G1Q04637 1599 aaKnown RBP33.52■■■□□ 2.96
RTN1-202ENST00000342503 BAZ1BQ9UIG0 1483 aaKnown RBP33.43■■■□□ 2.94
RTN1-202ENST00000342503 TRIM41Q8WV44 630 aa33.28■■■□□ 2.92
RTN1-202ENST00000342503 NCAPD3P42695 1498 aa33.22■■■□□ 2.91
RTN1-202ENST00000342503 HMGXB3Q12766 1538 aa33.21■■■□□ 2.91
RTN1-202ENST00000342503 ABCC8Q09428 1581 aa33.02■■■□□ 2.88
RTN1-202ENST00000342503 CC2D2AQ9P2K1 1620 aa32.98■■■□□ 2.87
RTN1-202ENST00000342503 LOC105371045A0A1W2PR82 267 aa32.85■■■□□ 2.85
RTN1-202ENST00000342503 FAM9AQ8IZU1 332 aaPredicted RBP32.75■■■□□ 2.83
RTN1-202ENST00000342503 WRNQ14191 1432 aaPredicted RBP eCLIP32.69■■■□□ 2.82
RTN1-202ENST00000342503 SYNJ1O43426 1573 aa32.6■■■□□ 2.81
RTN1-202ENST00000342503 CFTRP13569 1480 aa32.58■■■□□ 2.81
RTN1-202ENST00000342503 PRDM2Q13029 1718 aa32.52■■■□□ 2.8
RTN1-202ENST00000342503 SOGA1O94964 1423 aa32.43■■■□□ 2.78
RTN1-202ENST00000342503 TOP2BQ02880 1626 aa32.41■■■□□ 2.78
RTN1-202ENST00000342503 CADPSQ9ULU8 1353 aa32.4■■■□□ 2.78
RTN1-202ENST00000342503 BIVM-ERCC5R4GMW8 1640 aa32.38■■■□□ 2.77
RTN1-202ENST00000342503 AEBP2Q6ZN18 517 aaPredicted RBP32.37■■■□□ 2.77
RTN1-202ENST00000342503 EEA1Q15075 1411 aa32.34■■■□□ 2.77
RTN1-202ENST00000342503 EHMT2Q96KQ7 1210 aa32.34■■■□□ 2.77
RTN1-202ENST00000342503 RUSC2Q8N2Y8 1516 aa32.33■■■□□ 2.77
RTN1-202ENST00000342503 CUX1P39880 1505 aa32.26■■■□□ 2.76
RTN1-202ENST00000342503 CSRNP3Q8WYN3 585 aa32.19■■■□□ 2.74
RTN1-202ENST00000342503 NESP48681 1621 aa32.11■■■□□ 2.73
RTN1-202ENST00000342503 DNAJC5BQ9UF47 199 aa32.09■■■□□ 2.73
RTN1-202ENST00000342503 FANCD2Q9BXW9 1451 aa32.08■■■□□ 2.73
RTN1-202ENST00000342503 LAMC3Q9Y6N6 1575 aa32.06■■■□□ 2.72
RTN1-202ENST00000342503 KIF21BO75037 1637 aa31.97■■■□□ 2.71
RTN1-202ENST00000342503 GOLGA3Q08378 1498 aa31.96■■■□□ 2.71
RTN1-202ENST00000342503 CEP164Q9UPV0 1460 aa31.92■■■□□ 2.7
RTN1-202ENST00000342503 TNIKQ9UKE5 1360 aa31.91■■■□□ 2.7
RTN1-202ENST00000342503 DNMBPQ6XZF7 1577 aa31.85■■■□□ 2.69
RTN1-202ENST00000342503 FGD5Q6ZNL6 1462 aa31.85■■■□□ 2.69
RTN1-202ENST00000342503 UBTFP17480 764 aaKnown RBP31.83■■■□□ 2.69
RTN1-202ENST00000342503 KIF27Q86VH2 1401 aa31.82■■■□□ 2.68
RTN1-202ENST00000342503 CEP162Q5TB80 1403 aa31.79■■■□□ 2.68
RTN1-202ENST00000342503 PDS5BQ9NTI5 1447 aa31.78■■■□□ 2.68
RTN1-202ENST00000342503 TOPBP1Q92547 1522 aa31.78■■■□□ 2.68
RTN1-202ENST00000342503 RAPGEF2Q9Y4G8 1499 aa31.75■■■□□ 2.67
RTN1-202ENST00000342503 KIF21AQ7Z4S6 1674 aa31.74■■■□□ 2.67
RTN1-202ENST00000342503 CUX2O14529 1486 aa31.7■■■□□ 2.67
RTN1-202ENST00000342503 PRXQ9BXM0 1461 aa31.7■■■□□ 2.66
RTN1-202ENST00000342503 URB2Q14146 1524 aaKnown RBP31.68■■■□□ 2.66
RTN1-202ENST00000342503 ERICH3Q5RHP9 1530 aa31.67■■■□□ 2.66
RTN1-202ENST00000342503 PCGF6Q9BYE7 350 aa31.66■■■□□ 2.66
RTN1-202ENST00000342503 POLA1P09884 1462 aaPredicted RBP31.64■■■□□ 2.66
RTN1-202ENST00000342503 RAD54L2Q9Y4B4 1467 aa31.58■■■□□ 2.65
RTN1-202ENST00000342503 ABCA10Q8WWZ4 1543 aa31.55■■■□□ 2.64
RTN1-202ENST00000342503 TRIM26Q12899 539 aaPredicted RBP31.53■■■□□ 2.64
RTN1-202ENST00000342503 IGF1RP08069 1367 aa31.52■■■□□ 2.64
RTN1-202ENST00000342503 WDR97A6NE52 1622 aa31.47■■■□□ 2.63
RTN1-202ENST00000342503 CLIP1P30622 1438 aa31.47■■■□□ 2.63
RTN1-202ENST00000342503 MRC2Q9UBG0 1479 aa31.39■■■□□ 2.62
RTN1-202ENST00000342503 CARMIL1Q5VZK9 1371 aa31.37■■■□□ 2.61
RTN1-202ENST00000342503 PPARGC1BQ86YN6 1023 aaKnown RBP31.33■■■□□ 2.61
RTN1-202ENST00000342503 ABCA5Q8WWZ7 1642 aa31.3■■■□□ 2.6
RTN1-202ENST00000342503 TARBP1Q13395 1621 aaKnown RBP31.29■■■□□ 2.6
RTN1-202ENST00000342503 RANGAP1P46060 587 aaPredicted RBP31.29■■■□□ 2.6
RTN1-202ENST00000342503 CUL7Q14999 1698 aa31.26■■■□□ 2.6
RTN1-202ENST00000342503 VPS8Q8N3P4 1428 aa31.23■■■□□ 2.59
RTN1-202ENST00000342503 TDRD9Q8NDG6 1382 aaKnown RBP31.23■■■□□ 2.59
RTN1-202ENST00000342503 WDR62O43379 1518 aa31.21■■■□□ 2.59
RTN1-202ENST00000342503 GAPVD1Q14C86 1478 aa31.19■■■□□ 2.58
RTN1-202ENST00000342503 ERCC6Q03468 1493 aa31.17■■■□□ 2.58
RTN1-202ENST00000342503 ARAP1Q96P48 1450 aa31.15■■■□□ 2.58
RTN1-202ENST00000342503 THOC2Q8NI27 1593 aaKnown RBP31.08■■■□□ 2.57
RTN1-202ENST00000342503 ARHGAP35Q9NRY4 1499 aa31.07■■■□□ 2.56
RTN1-202ENST00000342503 PBRM1Q86U86 1689 aa31.07■■■□□ 2.56
RTN1-202ENST00000342503 IFT140Q96RY7 1462 aa31.04■■■□□ 2.56
RTN1-202ENST00000342503 CTTNBP2Q8WZ74 1663 aa31.02■■■□□ 2.56
RTN1-202ENST00000342503 TTBK1Q5TCY1 1321 aaPredicted RBP31.01■■■□□ 2.55
RTN1-202ENST00000342503 AQRO60306 1485 aaKnown RBP eCLIP30.98■■■□□ 2.55
RTN1-202ENST00000342503 HRCP23327 699 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms