RNA–Protein interactions for RNA: ENST00000340699.7

PBX1-201, Transcript of PBX homeobox 1, humanhuman

TSL 4

Gene PBX1, Length 734 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-201ENST00000340699 NISCHQ9Y2I1 1504 aa54.74■■■■■ 6.35
PBX1-201ENST00000340699 CCDC180Q9P1Z9 1646 aa48.73■■■■■ 5.39
PBX1-201ENST00000340699 ABCC9O60706 1549 aa47.89■■■■■ 5.26
PBX1-201ENST00000340699 RB1CC1Q8TDY2 1594 aa46■■■■■ 4.95
PBX1-201ENST00000340699 DCAF8L2P0C7V8 631 aa45.97■■■■■ 4.95
PBX1-201ENST00000340699 NACADO15069 1562 aa45.88■■■■■ 4.94
PBX1-201ENST00000340699 ZCCHC6Q5VYS8 1495 aaKnown RBP45.53■■■■■ 4.88
PBX1-201ENST00000340699 MYO15BQ96JP2 1530 aa45.52■■■■■ 4.88
PBX1-201ENST00000340699 DCAF1Q9Y4B6 1507 aa45.26■■■■■ 4.84
PBX1-201ENST00000340699 UNC13AQ9UPW8 1703 aa44.89■■■■■ 4.78
PBX1-201ENST00000340699 PABPN1Q86U42 306 aaKnown RBP eCLIP44.75■■■■■ 4.75
PBX1-201ENST00000340699 BICRAQ9NZM4 1560 aa44.53■■■■■ 4.72
PBX1-201ENST00000340699 SCRIBQ14160 1630 aa44.47■■■■■ 4.71
PBX1-201ENST00000340699 SHROOM4Q9ULL8 1493 aa44.08■■■■■ 4.65
PBX1-201ENST00000340699 DNAJC5BQ9UF47 199 aa44.08■■■■■ 4.65
PBX1-201ENST00000340699 EIF4G1Q04637 1599 aaKnown RBP43.41■■■■■ 4.54
PBX1-201ENST00000340699 CC2D2AQ9P2K1 1620 aa43.3■■■■■ 4.52
PBX1-201ENST00000340699 CECR2Q9BXF3 1484 aa43.05■■■■■ 4.48
PBX1-201ENST00000340699 SMARCA4P51532 1647 aa42.5■■■■■ 4.39
PBX1-201ENST00000340699 BAZ1AQ9NRL2 1556 aaPredicted RBP42.46■■■■■ 4.39
PBX1-201ENST00000340699 NCAPD3P42695 1498 aa42.33■■■■■ 4.37
PBX1-201ENST00000340699 ATAD2BQ9ULI0 1458 aa42.33■■■■■ 4.37
PBX1-201ENST00000340699 SMARCA2P51531 1590 aa42.29■■■■■ 4.36
PBX1-201ENST00000340699 MROH2BQ7Z745 1585 aa42.17■■■■■ 4.34
PBX1-201ENST00000340699 HMGXB3Q12766 1538 aa42.1■■■■■ 4.33
PBX1-201ENST00000340699 PEG3Q9GZU2 1588 aa42.06■■■■■ 4.32
PBX1-201ENST00000340699 BAZ1BQ9UIG0 1483 aaKnown RBP42■■■■■ 4.31
PBX1-201ENST00000340699 WIZO95785 1651 aa41.72■■■■■ 4.27
PBX1-201ENST00000340699 RSF1Q96T23 1441 aaPredicted RBP41.63■■■■■ 4.26
PBX1-201ENST00000340699 NESP48681 1621 aa41.36■■■■■ 4.21
PBX1-201ENST00000340699 ERCC6Q03468 1493 aa41.34■■■■■ 4.21
PBX1-201ENST00000340699 TOP2AP11388 1531 aaKnown RBP41.27■■■■■ 4.2
PBX1-201ENST00000340699 LAMC3Q9Y6N6 1575 aa41.26■■■■■ 4.2
PBX1-201ENST00000340699 CADPSQ9ULU8 1353 aa41.12■■■■■ 4.17
PBX1-201ENST00000340699 PDS5BQ9NTI5 1447 aa41.03■■■■■ 4.16
PBX1-201ENST00000340699 CUX2O14529 1486 aa40.91■■■■■ 4.14
PBX1-201ENST00000340699 KIF21AQ7Z4S6 1674 aa40.87■■■■■ 4.13
PBX1-201ENST00000340699 CFTRP13569 1480 aa40.81■■■■■ 4.12
PBX1-201ENST00000340699 CCDC88BA6NC98 1476 aa40.8■■■■■ 4.12
PBX1-201ENST00000340699 THOC2Q8NI27 1593 aaKnown RBP40.74■■■■■ 4.11
PBX1-201ENST00000340699 FANCD2Q9BXW9 1451 aa40.64■■■■■ 4.1
PBX1-201ENST00000340699 CEP164Q9UPV0 1460 aa40.61■■■■■ 4.09
PBX1-201ENST00000340699 MRC2Q9UBG0 1479 aa40.58■■■■■ 4.09
PBX1-201ENST00000340699 SUPT5HO00267 1087 aaKnown RBP40.56■■■■■ 4.08
PBX1-201ENST00000340699 PRDM2Q13029 1718 aa40.48■■■■■ 4.07
PBX1-201ENST00000340699 WDR62O43379 1518 aa40.42■■■■■ 4.06
PBX1-201ENST00000340699 URB2Q14146 1524 aaKnown RBP40.21■■■■■ 4.03
PBX1-201ENST00000340699 ABCC8Q09428 1581 aa40■■■■□ 3.99
PBX1-201ENST00000340699 TOPBP1Q92547 1522 aa39.96■■■■□ 3.99
PBX1-201ENST00000340699 DNMBPQ6XZF7 1577 aa39.89■■■■□ 3.98
PBX1-201ENST00000340699 DNAJC5Q9H3Z4 198 aa39.89■■■■□ 3.98
PBX1-201ENST00000340699 IFT140Q96RY7 1462 aa39.77■■■■□ 3.96
PBX1-201ENST00000340699 POLA1P09884 1462 aaPredicted RBP39.59■■■■□ 3.93
PBX1-201ENST00000340699 CUX1P39880 1505 aa39.57■■■■□ 3.93
PBX1-201ENST00000340699 ZNF608Q9ULD9 1512 aaPredicted RBP39.56■■■■□ 3.92
PBX1-201ENST00000340699 TARBP1Q13395 1621 aaKnown RBP39.51■■■■□ 3.91
PBX1-201ENST00000340699 FGD5Q6ZNL6 1462 aa39.49■■■■□ 3.91
PBX1-201ENST00000340699 SOGA1O94964 1423 aa39.48■■■■□ 3.91
PBX1-201ENST00000340699 RAD54L2Q9Y4B4 1467 aa39.44■■■■□ 3.9
PBX1-201ENST00000340699 EIF4G3O43432 1585 aaKnown RBP39.4■■■■□ 3.9
PBX1-201ENST00000340699 AQRO60306 1485 aaKnown RBP eCLIP39.36■■■■□ 3.89
PBX1-201ENST00000340699 WRNQ14191 1432 aaPredicted RBP eCLIP39.3■■■■□ 3.889e-6■■■■■ 50.1
PBX1-201ENST00000340699 OSCARQ8IYS5 282 aa39.27■■■■□ 3.88
PBX1-201ENST00000340699 TDRD9Q8NDG6 1382 aaKnown RBP39.27■■■■□ 3.88
PBX1-201ENST00000340699 WDR97A6NE52 1622 aa39.22■■■■□ 3.87
PBX1-201ENST00000340699 TOP2BQ02880 1626 aa39.2■■■■□ 3.87
PBX1-201ENST00000340699 BIVM-ERCC5R4GMW8 1640 aa39.18■■■■□ 3.86
PBX1-201ENST00000340699 SYNJ1O43426 1573 aa39.16■■■■□ 3.86
PBX1-201ENST00000340699 ABCA10Q8WWZ4 1543 aa39.09■■■■□ 3.85
PBX1-201ENST00000340699 GRIN2BQ13224 1484 aa39.03■■■■□ 3.84
PBX1-201ENST00000340699 FBLN2P98095 1184 aa39.02■■■■□ 3.84
PBX1-201ENST00000340699 GAPVD1Q14C86 1478 aa39.01■■■■□ 3.84
PBX1-201ENST00000340699 SNAPC4Q5SXM2 1469 aa38.98■■■■□ 3.83
PBX1-201ENST00000340699 CHD1O14646 1710 aa38.95■■■■□ 3.83
PBX1-201ENST00000340699 MAGI1Q96QZ7 1491 aaPredicted RBP38.93■■■■□ 3.82
PBX1-201ENST00000340699 ABCA5Q8WWZ7 1642 aa38.92■■■■□ 3.82
PBX1-201ENST00000340699 PBRM1Q86U86 1689 aa38.91■■■■□ 3.82
PBX1-201ENST00000340699 CHMP7Q8WUX9 453 aaPredicted RBP38.87■■■■□ 3.81
PBX1-201ENST00000340699 SYNJ2O15056 1496 aa38.78■■■■□ 3.8
PBX1-201ENST00000340699 ERICH3Q5RHP9 1530 aa38.63■■■■□ 3.78
PBX1-201ENST00000340699 ADAMTS12P58397 1594 aa38.57■■■■□ 3.77
PBX1-201ENST00000340699 TRIM41Q8WV44 630 aa38.57■■■■□ 3.76
PBX1-201ENST00000340699 RIMBP3CA6NJZ7 1639 aa38.56■■■■□ 3.76
PBX1-201ENST00000340699 RIMBP3BA6NNM3 1639 aa38.56■■■■□ 3.76
PBX1-201ENST00000340699 RIMBP3Q9UFD9 1639 aa38.56■■■■□ 3.76
PBX1-201ENST00000340699 FHAD1B1AJZ9 1412 aa38.55■■■■□ 3.76
PBX1-201ENST00000340699 ARHGEF11O15085 1522 aa38.54■■■■□ 3.76
PBX1-201ENST00000340699 KIF27Q86VH2 1401 aa38.52■■■■□ 3.76
PBX1-201ENST00000340699 CLASP1Q7Z460 1538 aa38.5■■■■□ 3.75
PBX1-201ENST00000340699 GRIN2AQ12879 1464 aa38.5■■■■□ 3.75
PBX1-201ENST00000340699 IGF1RP08069 1367 aa38.35■■■■□ 3.73
PBX1-201ENST00000340699 NUP160Q12769 1436 aa38.32■■■■□ 3.73
PBX1-201ENST00000340699 CEP170Q5SW79 1584 aa38.29■■■■□ 3.72
PBX1-201ENST00000340699 CYB5RLQ6IPT4 315 aa38.28■■■■□ 3.72
PBX1-201ENST00000340699 CUL7Q14999 1698 aa38.26■■■■□ 3.71
PBX1-201ENST00000340699 ARAP1Q96P48 1450 aa38.2■■■■□ 3.71
PBX1-201ENST00000340699 CARMIL1Q5VZK9 1371 aa38.15■■■■□ 3.7
PBX1-201ENST00000340699 RUSC2Q8N2Y8 1516 aa38.06■■■■□ 3.68
PBX1-201ENST00000340699 SHROOM2Q13796 1616 aa38.04■■■■□ 3.68
PBX1-201ENST00000340699 JPH4Q96JJ6 628 aa38.01■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms