RNA–Protein interactions for RNA: ENST00000340019.4

TMC1-202, Transcript of transmembrane channel like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TMC1, Length 3,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMC1-202ENST00000340019 NISCHQ9Y2I1 1504 aa18.26■□□□□ 0.51
TMC1-202ENST00000340019 CCDC180Q9P1Z9 1646 aa16.04■□□□□ 0.16
TMC1-202ENST00000340019 ZCCHC6Q5VYS8 1495 aaKnown RBP15.31■□□□□ 0.04
TMC1-202ENST00000340019 ABCC9O60706 1549 aa15.25■□□□□ 0.03
TMC1-202ENST00000340019 DCAF1Q9Y4B6 1507 aa15.13■□□□□ 0.01
TMC1-202ENST00000340019 MYO15BQ96JP2 1530 aa15.03■□□□□ -0
TMC1-202ENST00000340019 DCAF8L2P0C7V8 631 aa15.02□□□□□ -0.01
TMC1-202ENST00000340019 NACADO15069 1562 aa14.96□□□□□ -0.01
TMC1-202ENST00000340019 RB1CC1Q8TDY2 1594 aa14.86□□□□□ -0.03
TMC1-202ENST00000340019 SHROOM4Q9ULL8 1493 aa14.67□□□□□ -0.06
TMC1-202ENST00000340019 SCRIBQ14160 1630 aa14.66□□□□□ -0.06
TMC1-202ENST00000340019 UNC13AQ9UPW8 1703 aa14.59□□□□□ -0.07
TMC1-202ENST00000340019 BICRAQ9NZM4 1560 aa14.44□□□□□ -0.1
TMC1-202ENST00000340019 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.12
TMC1-202ENST00000340019 CECR2Q9BXF3 1484 aa14.18□□□□□ -0.14
TMC1-202ENST00000340019 BAZ1AQ9NRL2 1556 aaPredicted RBP14.11□□□□□ -0.15
TMC1-202ENST00000340019 MROH2BQ7Z745 1585 aa14.08□□□□□ -0.15
TMC1-202ENST00000340019 RSF1Q96T23 1441 aaPredicted RBP14.08□□□□□ -0.16
TMC1-202ENST00000340019 SMARCA4P51532 1647 aa14.08□□□□□ -0.16
TMC1-202ENST00000340019 SUPT5HO00267 1087 aaKnown RBP14.02□□□□□ -0.17
TMC1-202ENST00000340019 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
TMC1-202ENST00000340019 WIZO95785 1651 aa13.96□□□□□ -0.17
TMC1-202ENST00000340019 PEG3Q9GZU2 1588 aa13.95□□□□□ -0.18
TMC1-202ENST00000340019 ATAD2BQ9ULI0 1458 aa13.88□□□□□ -0.19
TMC1-202ENST00000340019 SMARCA2P51531 1590 aa13.87□□□□□ -0.19
TMC1-202ENST00000340019 AEBP2Q6ZN18 517 aaPredicted RBP13.84□□□□□ -0.19
TMC1-202ENST00000340019 CC2D2AQ9P2K1 1620 aa13.83□□□□□ -0.2
TMC1-202ENST00000340019 TOP2AP11388 1531 aaKnown RBP13.82□□□□□ -0.2
TMC1-202ENST00000340019 NCAPD3P42695 1498 aa13.8□□□□□ -0.2
TMC1-202ENST00000340019 HMGXB3Q12766 1538 aa13.78□□□□□ -0.2
TMC1-202ENST00000340019 BAZ1BQ9UIG0 1483 aaKnown RBP13.77□□□□□ -0.2
TMC1-202ENST00000340019 CCDC88BA6NC98 1476 aa13.66□□□□□ -0.22
TMC1-202ENST00000340019 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
TMC1-202ENST00000340019 CHIC1Q5VXU3 224 aa13.47□□□□□ -0.25
TMC1-202ENST00000340019 CFTRP13569 1480 aa13.44□□□□□ -0.26
TMC1-202ENST00000340019 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
TMC1-202ENST00000340019 PRDM2Q13029 1718 aa13.4□□□□□ -0.26
TMC1-202ENST00000340019 LAMC3Q9Y6N6 1575 aa13.37□□□□□ -0.27
TMC1-202ENST00000340019 NESP48681 1621 aa13.35□□□□□ -0.27
TMC1-202ENST00000340019 ABCC8Q09428 1581 aa13.31□□□□□ -0.28
TMC1-202ENST00000340019 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
TMC1-202ENST00000340019 WRNQ14191 1432 aaPredicted RBP eCLIP13.24□□□□□ -0.29
TMC1-202ENST00000340019 PDS5BQ9NTI5 1447 aa13.24□□□□□ -0.29
TMC1-202ENST00000340019 TRIM41Q8WV44 630 aa13.22□□□□□ -0.29
TMC1-202ENST00000340019 SYNJ1O43426 1573 aa13.21□□□□□ -0.29
TMC1-202ENST00000340019 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.29
TMC1-202ENST00000340019 CEP164Q9UPV0 1460 aa13.2□□□□□ -0.3
TMC1-202ENST00000340019 TOP2BQ02880 1626 aa13.19□□□□□ -0.3
TMC1-202ENST00000340019 BIVM-ERCC5R4GMW8 1640 aa13.19□□□□□ -0.3
TMC1-202ENST00000340019 CUX1P39880 1505 aa13.18□□□□□ -0.3
TMC1-202ENST00000340019 DNMBPQ6XZF7 1577 aa13.13□□□□□ -0.31
TMC1-202ENST00000340019 URB2Q14146 1524 aaKnown RBP13.12□□□□□ -0.31
TMC1-202ENST00000340019 TOPBP1Q92547 1522 aa13.11□□□□□ -0.31
TMC1-202ENST00000340019 MRC2Q9UBG0 1479 aa13.09□□□□□ -0.31
TMC1-202ENST00000340019 ERCC6Q03468 1493 aa13.08□□□□□ -0.32
TMC1-202ENST00000340019 FGD5Q6ZNL6 1462 aa13.06□□□□□ -0.32
TMC1-202ENST00000340019 THOC2Q8NI27 1593 aaKnown RBP13.05□□□□□ -0.32
TMC1-202ENST00000340019 WDR62O43379 1518 aa13.05□□□□□ -0.32
TMC1-202ENST00000340019 POLA1P09884 1462 aaPredicted RBP13.03□□□□□ -0.32
TMC1-202ENST00000340019 SOGA1O94964 1423 aa13.01□□□□□ -0.33
TMC1-202ENST00000340019 RUSC2Q8N2Y8 1516 aa12.98□□□□□ -0.33
TMC1-202ENST00000340019 RAD54L2Q9Y4B4 1467 aa12.97□□□□□ -0.33
TMC1-202ENST00000340019 EEA1Q15075 1411 aa12.97□□□□□ -0.33
TMC1-202ENST00000340019 WDR97A6NE52 1622 aa12.96□□□□□ -0.33
TMC1-202ENST00000340019 ABCA10Q8WWZ4 1543 aa12.95□□□□□ -0.34
TMC1-202ENST00000340019 CUX2O14529 1486 aa12.95□□□□□ -0.34
TMC1-202ENST00000340019 TARBP1Q13395 1621 aaKnown RBP12.95□□□□□ -0.34
TMC1-202ENST00000340019 FAM9AQ8IZU1 332 aaPredicted RBP12.93□□□□□ -0.34
TMC1-202ENST00000340019 KIF27Q86VH2 1401 aa12.93□□□□□ -0.34
TMC1-202ENST00000340019 IFT140Q96RY7 1462 aa12.9□□□□□ -0.34
TMC1-202ENST00000340019 ABCA5Q8WWZ7 1642 aa12.88□□□□□ -0.35
TMC1-202ENST00000340019 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
TMC1-202ENST00000340019 TDRD9Q8NDG6 1382 aaKnown RBP12.84□□□□□ -0.35
TMC1-202ENST00000340019 IGF1RP08069 1367 aa12.83□□□□□ -0.35
TMC1-202ENST00000340019 KIF21BO75037 1637 aa12.83□□□□□ -0.36
TMC1-202ENST00000340019 GAPVD1Q14C86 1478 aa12.83□□□□□ -0.36
TMC1-202ENST00000340019 ZNF608Q9ULD9 1512 aaPredicted RBP12.83□□□□□ -0.36
TMC1-202ENST00000340019 LOC105371045A0A1W2PR82 267 aa12.82□□□□□ -0.36
TMC1-202ENST00000340019 PRXQ9BXM0 1461 aa12.82□□□□□ -0.36
TMC1-202ENST00000340019 ERICH3Q5RHP9 1530 aa12.81□□□□□ -0.36
TMC1-202ENST00000340019 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.36
TMC1-202ENST00000340019 EIF4G3O43432 1585 aaKnown RBP12.8□□□□□ -0.36
TMC1-202ENST00000340019 PBRM1Q86U86 1689 aa12.8□□□□□ -0.36
TMC1-202ENST00000340019 CUL7Q14999 1698 aa12.78□□□□□ -0.36
TMC1-202ENST00000340019 GOLGA3Q08378 1498 aa12.77□□□□□ -0.37
TMC1-202ENST00000340019 RAPGEF2Q9Y4G8 1499 aa12.77□□□□□ -0.37
TMC1-202ENST00000340019 GRIN2BQ13224 1484 aa12.76□□□□□ -0.37
TMC1-202ENST00000340019 CARMIL1Q5VZK9 1371 aa12.75□□□□□ -0.37
TMC1-202ENST00000340019 EHMT2Q96KQ7 1210 aa12.73□□□□□ -0.37
TMC1-202ENST00000340019 ADAMTS12P58397 1594 aa12.71□□□□□ -0.37
TMC1-202ENST00000340019 TNIKQ9UKE5 1360 aa12.7□□□□□ -0.38
TMC1-202ENST00000340019 FHAD1B1AJZ9 1412 aa12.69□□□□□ -0.38
TMC1-202ENST00000340019 SNAPC4Q5SXM2 1469 aa12.69□□□□□ -0.38
TMC1-202ENST00000340019 MAGI1Q96QZ7 1491 aaPredicted RBP12.68□□□□□ -0.38
TMC1-202ENST00000340019 UBTFP17480 764 aaKnown RBP12.67□□□□□ -0.38
TMC1-202ENST00000340019 SYNJ2O15056 1496 aa12.63□□□□□ -0.39
TMC1-202ENST00000340019 CTTNBP2Q8WZ74 1663 aa12.61□□□□□ -0.39
TMC1-202ENST00000340019 GRIN2AQ12879 1464 aa12.61□□□□□ -0.39
TMC1-202ENST00000340019 CEP162Q5TB80 1403 aa12.61□□□□□ -0.39
TMC1-202ENST00000340019 CHMP7Q8WUX9 453 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms