RNA–Protein interactions for RNA: ENST00000338325.1

CSMD2-202, Transcript of CUB and Sushi multiple domains 2, humanhuman

TSL 1 (best) BASIC

Gene CSMD2, Length 1,544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD2-202ENST00000338325 NISCHQ9Y2I1 1504 aa29.21■■■□□ 2.27
CSMD2-202ENST00000338325 ABCC9O60706 1549 aa26.46■■□□□ 1.83
CSMD2-202ENST00000338325 CCDC180Q9P1Z9 1646 aa26.38■■□□□ 1.81
CSMD2-202ENST00000338325 RB1CC1Q8TDY2 1594 aa25.16■■□□□ 1.62
CSMD2-202ENST00000338325 NACADO15069 1562 aa24.93■■□□□ 1.58
CSMD2-202ENST00000338325 DNAJC5BQ9UF47 199 aa24.93■■□□□ 1.58
CSMD2-202ENST00000338325 UNC13AQ9UPW8 1703 aa24.65■■□□□ 1.54
CSMD2-202ENST00000338325 DCAF8L2P0C7V8 631 aa24.64■■□□□ 1.53
CSMD2-202ENST00000338325 PABPN1Q86U42 306 aaKnown RBP eCLIP24.56■■□□□ 1.52
CSMD2-202ENST00000338325 MYO15BQ96JP2 1530 aa24.53■■□□□ 1.52
CSMD2-202ENST00000338325 BICRAQ9NZM4 1560 aa24.43■■□□□ 1.5
CSMD2-202ENST00000338325 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
CSMD2-202ENST00000338325 DCAF1Q9Y4B6 1507 aa24.14■■□□□ 1.46
CSMD2-202ENST00000338325 SHROOM4Q9ULL8 1493 aa24.1■■□□□ 1.45
CSMD2-202ENST00000338325 SCRIBQ14160 1630 aa23.98■■□□□ 1.43
CSMD2-202ENST00000338325 CC2D2AQ9P2K1 1620 aa23.94■■□□□ 1.42
CSMD2-202ENST00000338325 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
CSMD2-202ENST00000338325 EIF4G1Q04637 1599 aaKnown RBP23.84■■□□□ 1.41
CSMD2-202ENST00000338325 DNAJC5Q9H3Z4 198 aa23.05■■□□□ 1.28
CSMD2-202ENST00000338325 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
CSMD2-202ENST00000338325 CUX2O14529 1486 aa22.92■■□□□ 1.26
CSMD2-202ENST00000338325 ATAD2BQ9ULI0 1458 aa22.89■■□□□ 1.25
CSMD2-202ENST00000338325 ERCC6Q03468 1493 aa22.88■■□□□ 1.25
CSMD2-202ENST00000338325 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
CSMD2-202ENST00000338325 SMARCA2P51531 1590 aa22.85■■□□□ 1.25
CSMD2-202ENST00000338325 HMGXB3Q12766 1538 aa22.84■■□□□ 1.25
CSMD2-202ENST00000338325 BAZ1AQ9NRL2 1556 aaPredicted RBP22.71■■□□□ 1.23
CSMD2-202ENST00000338325 NESP48681 1621 aa22.68■■□□□ 1.22
CSMD2-202ENST00000338325 BAZ1BQ9UIG0 1483 aaKnown RBP22.67■■□□□ 1.22
CSMD2-202ENST00000338325 PEG3Q9GZU2 1588 aa22.64■■□□□ 1.21
CSMD2-202ENST00000338325 THOC2Q8NI27 1593 aaKnown RBP22.56■■□□□ 1.2
CSMD2-202ENST00000338325 LAMC3Q9Y6N6 1575 aa22.54■■□□□ 1.2
CSMD2-202ENST00000338325 MROH2BQ7Z745 1585 aa22.5■■□□□ 1.19
CSMD2-202ENST00000338325 KIF21AQ7Z4S6 1674 aa22.47■■□□□ 1.19
CSMD2-202ENST00000338325 PDS5BQ9NTI5 1447 aa22.37■■□□□ 1.17
CSMD2-202ENST00000338325 CADPSQ9ULU8 1353 aa22.26■■□□□ 1.15
CSMD2-202ENST00000338325 WIZO95785 1651 aa22.25■■□□□ 1.15
CSMD2-202ENST00000338325 MRC2Q9UBG0 1479 aa22.22■■□□□ 1.15
CSMD2-202ENST00000338325 WDR62O43379 1518 aa22.19■■□□□ 1.14
CSMD2-202ENST00000338325 CEP164Q9UPV0 1460 aa22.09■■□□□ 1.13
CSMD2-202ENST00000338325 FANCD2Q9BXW9 1451 aa22.04■■□□□ 1.12
CSMD2-202ENST00000338325 CFTRP13569 1480 aa21.98■■□□□ 1.11
CSMD2-202ENST00000338325 TRIM41Q8WV44 630 aa21.96■■□□□ 1.11
CSMD2-202ENST00000338325 TOP2AP11388 1531 aaKnown RBP21.96■■□□□ 1.11
CSMD2-202ENST00000338325 RSF1Q96T23 1441 aaPredicted RBP21.94■■□□□ 1.1
CSMD2-202ENST00000338325 PRDM2Q13029 1718 aa21.88■■□□□ 1.09
CSMD2-202ENST00000338325 URB2Q14146 1524 aaKnown RBP21.87■■□□□ 1.09
CSMD2-202ENST00000338325 OSCARQ8IYS5 282 aa21.77■■□□□ 1.08
CSMD2-202ENST00000338325 CCDC88BA6NC98 1476 aa21.67■■□□□ 1.06
CSMD2-202ENST00000338325 IFT140Q96RY7 1462 aa21.64■■□□□ 1.06
CSMD2-202ENST00000338325 ZNF608Q9ULD9 1512 aaPredicted RBP21.61■■□□□ 1.05
CSMD2-202ENST00000338325 RIMBP3CA6NJZ7 1639 aa21.6■■□□□ 1.05
CSMD2-202ENST00000338325 RIMBP3BA6NNM3 1639 aa21.6■■□□□ 1.05
CSMD2-202ENST00000338325 RIMBP3Q9UFD9 1639 aa21.6■■□□□ 1.05
CSMD2-202ENST00000338325 TOPBP1Q92547 1522 aa21.6■■□□□ 1.05
CSMD2-202ENST00000338325 ABCC8Q09428 1581 aa21.55■■□□□ 1.04
CSMD2-202ENST00000338325 EIF4G3O43432 1585 aaKnown RBP21.54■■□□□ 1.04
CSMD2-202ENST00000338325 DNMBPQ6XZF7 1577 aa21.54■■□□□ 1.04
CSMD2-202ENST00000338325 ARHGEF11O15085 1522 aa21.49■■□□□ 1.03
CSMD2-202ENST00000338325 TARBP1Q13395 1621 aaKnown RBP21.45■■□□□ 1.02
CSMD2-202ENST00000338325 CHD1O14646 1710 aa21.44■■□□□ 1.02
CSMD2-202ENST00000338325 AQRO60306 1485 aaKnown RBP eCLIP21.38■■□□□ 1.01
CSMD2-202ENST00000338325 POLA1P09884 1462 aaPredicted RBP21.36■■□□□ 1.01
CSMD2-202ENST00000338325 RAD54L2Q9Y4B4 1467 aa21.27■■□□□ 1
CSMD2-202ENST00000338325 CYB5RLQ6IPT4 315 aa21.26■□□□□ 0.99
CSMD2-202ENST00000338325 ARAP1Q96P48 1450 aa21.25■□□□□ 0.99
CSMD2-202ENST00000338325 WDR97A6NE52 1622 aa21.25■□□□□ 0.99
CSMD2-202ENST00000338325 FBLN2P98095 1184 aa21.24■□□□□ 0.99
CSMD2-202ENST00000338325 SOGA1O94964 1423 aa21.23■□□□□ 0.99
CSMD2-202ENST00000338325 FGD5Q6ZNL6 1462 aa21.2■□□□□ 0.98
CSMD2-202ENST00000338325 TDRD9Q8NDG6 1382 aaKnown RBP21.2■□□□□ 0.98
CSMD2-202ENST00000338325 SNAPC4Q5SXM2 1469 aa21.19■□□□□ 0.98
CSMD2-202ENST00000338325 CUX1P39880 1505 aa21.17■□□□□ 0.98
CSMD2-202ENST00000338325 CLASP1Q7Z460 1538 aa21.16■□□□□ 0.98
CSMD2-202ENST00000338325 MAGI1Q96QZ7 1491 aaPredicted RBP21.14■□□□□ 0.97
CSMD2-202ENST00000338325 SYNJ1O43426 1573 aa21.13■□□□□ 0.97
CSMD2-202ENST00000338325 TRHP20396 242 aaPredicted RBP21.1■□□□□ 0.97
CSMD2-202ENST00000338325 GRIN2BQ13224 1484 aa21.1■□□□□ 0.97
CSMD2-202ENST00000338325 PBRM1Q86U86 1689 aa21.08■□□□□ 0.97
CSMD2-202ENST00000338325 CHMP7Q8WUX9 453 aaPredicted RBP21.07■□□□□ 0.96
CSMD2-202ENST00000338325 SYNJ2O15056 1496 aa21.06■□□□□ 0.96
CSMD2-202ENST00000338325 GAPVD1Q14C86 1478 aa20.99■□□□□ 0.95
CSMD2-202ENST00000338325 ABCA5Q8WWZ7 1642 aa20.99■□□□□ 0.95
CSMD2-202ENST00000338325 ABCA10Q8WWZ4 1543 aa20.96■□□□□ 0.95
CSMD2-202ENST00000338325 ADAMTS12P58397 1594 aa20.84■□□□□ 0.93
CSMD2-202ENST00000338325 GRIN2AQ12879 1464 aa20.84■□□□□ 0.93
CSMD2-202ENST00000338325 BIVM-ERCC5R4GMW8 1640 aa20.82■□□□□ 0.92
CSMD2-202ENST00000338325 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
CSMD2-202ENST00000338325 TOP2BQ02880 1626 aa20.79■□□□□ 0.92
CSMD2-202ENST00000338325 CEP170Q5SW79 1584 aa20.79■□□□□ 0.92
CSMD2-202ENST00000338325 ERCC6L2Q5T890 1561 aa20.79■□□□□ 0.92
CSMD2-202ENST00000338325 SUPT5HO00267 1087 aaKnown RBP20.77■□□□□ 0.92
CSMD2-202ENST00000338325 NUP160Q12769 1436 aa20.77■□□□□ 0.91
CSMD2-202ENST00000338325 SHROOM2Q13796 1616 aa20.75■□□□□ 0.91
CSMD2-202ENST00000338325 FHAD1B1AJZ9 1412 aa20.72■□□□□ 0.91
CSMD2-202ENST00000338325 ERICH3Q5RHP9 1530 aa20.7■□□□□ 0.91
CSMD2-202ENST00000338325 AEBP2Q6ZN18 517 aaPredicted RBP20.63■□□□□ 0.89
CSMD2-202ENST00000338325 KIF13AQ9H1H9 1805 aa20.6■□□□□ 0.89
CSMD2-202ENST00000338325 PRG4Q92954 1404 aaPredicted RBP20.56■□□□□ 0.88
CSMD2-202ENST00000338325 RUSC2Q8N2Y8 1516 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms