RNA–Protein interactions for RNA: ENST00000333001.10

CMTM1-203, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 883 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-203ENST00000333001 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
CMTM1-203ENST00000333001 CCDC180Q9P1Z9 1646 aa26.73■■□□□ 1.87
CMTM1-203ENST00000333001 ABCC9O60706 1549 aa26.39■■□□□ 1.82
CMTM1-203ENST00000333001 RB1CC1Q8TDY2 1594 aa25.28■■□□□ 1.64
CMTM1-203ENST00000333001 NACADO15069 1562 aa25.22■■□□□ 1.63
CMTM1-203ENST00000333001 DCAF8L2P0C7V8 631 aa25.16■■□□□ 1.62
CMTM1-203ENST00000333001 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
CMTM1-203ENST00000333001 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.57
CMTM1-203ENST00000333001 DNAJC5BQ9UF47 199 aa24.84■■□□□ 1.57
CMTM1-203ENST00000333001 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
CMTM1-203ENST00000333001 UNC13AQ9UPW8 1703 aa24.63■■□□□ 1.53
CMTM1-203ENST00000333001 PABPN1Q86U42 306 aaKnown RBP eCLIP24.57■■□□□ 1.52
CMTM1-203ENST00000333001 BICRAQ9NZM4 1560 aa24.45■■□□□ 1.5
CMTM1-203ENST00000333001 SCRIBQ14160 1630 aa24.31■■□□□ 1.48
CMTM1-203ENST00000333001 SHROOM4Q9ULL8 1493 aa24.29■■□□□ 1.48
CMTM1-203ENST00000333001 EIF4G1Q04637 1599 aaKnown RBP23.85■■□□□ 1.41
CMTM1-203ENST00000333001 CECR2Q9BXF3 1484 aa23.83■■□□□ 1.41
CMTM1-203ENST00000333001 CC2D2AQ9P2K1 1620 aa23.83■■□□□ 1.41
CMTM1-203ENST00000333001 NCAPD3P42695 1498 aa23.27■■□□□ 1.32
CMTM1-203ENST00000333001 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
CMTM1-203ENST00000333001 BAZ1AQ9NRL2 1556 aaPredicted RBP23.25■■□□□ 1.31
CMTM1-203ENST00000333001 SMARCA2P51531 1590 aa23.22■■□□□ 1.31
CMTM1-203ENST00000333001 ATAD2BQ9ULI0 1458 aa23.21■■□□□ 1.31
CMTM1-203ENST00000333001 HMGXB3Q12766 1538 aa23.11■■□□□ 1.29
CMTM1-203ENST00000333001 DNAJC5Q9H3Z4 198 aa23.08■■□□□ 1.29
CMTM1-203ENST00000333001 PEG3Q9GZU2 1588 aa23.07■■□□□ 1.28
CMTM1-203ENST00000333001 MROH2BQ7Z745 1585 aa23.03■■□□□ 1.28
CMTM1-203ENST00000333001 BAZ1BQ9UIG0 1483 aaKnown RBP23.03■■□□□ 1.28
CMTM1-203ENST00000333001 ERCC6Q03468 1493 aa22.91■■□□□ 1.26
CMTM1-203ENST00000333001 CUX2O14529 1486 aa22.9■■□□□ 1.26
CMTM1-203ENST00000333001 WIZO95785 1651 aa22.77■■□□□ 1.24
CMTM1-203ENST00000333001 RSF1Q96T23 1441 aaPredicted RBP22.74■■□□□ 1.23
CMTM1-203ENST00000333001 NESP48681 1621 aa22.68■■□□□ 1.22
CMTM1-203ENST00000333001 LAMC3Q9Y6N6 1575 aa22.68■■□□□ 1.22
CMTM1-203ENST00000333001 CADPSQ9ULU8 1353 aa22.58■■□□□ 1.21
CMTM1-203ENST00000333001 PDS5BQ9NTI5 1447 aa22.57■■□□□ 1.2
CMTM1-203ENST00000333001 TOP2AP11388 1531 aaKnown RBP22.56■■□□□ 1.2
CMTM1-203ENST00000333001 KIF21AQ7Z4S6 1674 aa22.42■■□□□ 1.18
CMTM1-203ENST00000333001 THOC2Q8NI27 1593 aaKnown RBP22.41■■□□□ 1.18
CMTM1-203ENST00000333001 CFTRP13569 1480 aa22.38■■□□□ 1.17
CMTM1-203ENST00000333001 MRC2Q9UBG0 1479 aa22.3■■□□□ 1.16
CMTM1-203ENST00000333001 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
CMTM1-203ENST00000333001 FANCD2Q9BXW9 1451 aa22.29■■□□□ 1.16
CMTM1-203ENST00000333001 CEP164Q9UPV0 1460 aa22.29■■□□□ 1.16
CMTM1-203ENST00000333001 WDR62O43379 1518 aa22.21■■□□□ 1.15
CMTM1-203ENST00000333001 PRDM2Q13029 1718 aa22.18■■□□□ 1.14
CMTM1-203ENST00000333001 TRIM41Q8WV44 630 aa22.05■■□□□ 1.12
CMTM1-203ENST00000333001 URB2Q14146 1524 aaKnown RBP22.04■■□□□ 1.12
CMTM1-203ENST00000333001 SUPT5HO00267 1087 aaKnown RBP22.02■■□□□ 1.12
CMTM1-203ENST00000333001 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
CMTM1-203ENST00000333001 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
CMTM1-203ENST00000333001 DNMBPQ6XZF7 1577 aa21.87■■□□□ 1.09
CMTM1-203ENST00000333001 IFT140Q96RY7 1462 aa21.85■■□□□ 1.09
CMTM1-203ENST00000333001 OSCARQ8IYS5 282 aa21.83■■□□□ 1.09
CMTM1-203ENST00000333001 ZNF608Q9ULD9 1512 aaPredicted RBP21.7■■□□□ 1.06
CMTM1-203ENST00000333001 POLA1P09884 1462 aaPredicted RBP21.69■■□□□ 1.06
CMTM1-203ENST00000333001 TARBP1Q13395 1621 aaKnown RBP21.66■■□□□ 1.06
CMTM1-203ENST00000333001 SOGA1O94964 1423 aa21.65■■□□□ 1.06
CMTM1-203ENST00000333001 CUX1P39880 1505 aa21.63■■□□□ 1.05
CMTM1-203ENST00000333001 EIF4G3O43432 1585 aaKnown RBP21.61■■□□□ 1.05
CMTM1-203ENST00000333001 FGD5Q6ZNL6 1462 aa21.6■■□□□ 1.05
CMTM1-203ENST00000333001 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.05
CMTM1-203ENST00000333001 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.04
CMTM1-203ENST00000333001 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
CMTM1-203ENST00000333001 TDRD9Q8NDG6 1382 aaKnown RBP21.52■■□□□ 1.04
CMTM1-203ENST00000333001 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
CMTM1-203ENST00000333001 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
CMTM1-203ENST00000333001 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
CMTM1-203ENST00000333001 WRNQ14191 1432 aaPredicted RBP eCLIP21.46■■□□□ 1.03
CMTM1-203ENST00000333001 ARHGEF11O15085 1522 aa21.43■■□□□ 1.02
CMTM1-203ENST00000333001 FBLN2P98095 1184 aa21.42■■□□□ 1.02
CMTM1-203ENST00000333001 TOP2BQ02880 1626 aa21.42■■□□□ 1.02
CMTM1-203ENST00000333001 ABCA10Q8WWZ4 1543 aa21.41■■□□□ 1.02
CMTM1-203ENST00000333001 GRIN2BQ13224 1484 aa21.41■■□□□ 1.02
CMTM1-203ENST00000333001 BIVM-ERCC5R4GMW8 1640 aa21.4■■□□□ 1.02
CMTM1-203ENST00000333001 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
CMTM1-203ENST00000333001 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
CMTM1-203ENST00000333001 CHD1O14646 1710 aa21.38■■□□□ 1.01
CMTM1-203ENST00000333001 CHMP7Q8WUX9 453 aaPredicted RBP21.36■■□□□ 1.01
CMTM1-203ENST00000333001 SNAPC4Q5SXM2 1469 aa21.36■■□□□ 1.01
CMTM1-203ENST00000333001 SYNJ1O43426 1573 aa21.35■■□□□ 1.01
CMTM1-203ENST00000333001 CYB5RLQ6IPT4 315 aa21.32■■□□□ 1
CMTM1-203ENST00000333001 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
CMTM1-203ENST00000333001 SYNJ2O15056 1496 aa21.3■■□□□ 1
CMTM1-203ENST00000333001 PBRM1Q86U86 1689 aa21.3■■□□□ 1
CMTM1-203ENST00000333001 TRHP20396 242 aaPredicted RBP21.22■□□□□ 0.99
CMTM1-203ENST00000333001 ARAP1Q96P48 1450 aa21.18■□□□□ 0.98
CMTM1-203ENST00000333001 ERICH3Q5RHP9 1530 aa21.17■□□□□ 0.98
CMTM1-203ENST00000333001 CLASP1Q7Z460 1538 aa21.15■□□□□ 0.98
CMTM1-203ENST00000333001 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
CMTM1-203ENST00000333001 GRIN2AQ12879 1464 aa21.12■□□□□ 0.97
CMTM1-203ENST00000333001 ADAMTS12P58397 1594 aa21.11■□□□□ 0.97
CMTM1-203ENST00000333001 KIF27Q86VH2 1401 aa21.06■□□□□ 0.96
CMTM1-203ENST00000333001 NUP160Q12769 1436 aa21.04■□□□□ 0.96
CMTM1-203ENST00000333001 IGF1RP08069 1367 aa20.98■□□□□ 0.95
CMTM1-203ENST00000333001 CEP170Q5SW79 1584 aa20.97■□□□□ 0.95
CMTM1-203ENST00000333001 CUL7Q14999 1698 aa20.93■□□□□ 0.94
CMTM1-203ENST00000333001 JPH4Q96JJ6 628 aa20.88■□□□□ 0.93
CMTM1-203ENST00000333001 SHROOM2Q13796 1616 aa20.88■□□□□ 0.93
CMTM1-203ENST00000333001 CARMIL1Q5VZK9 1371 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms