RNA–Protein interactions for RNA: ENST00000332682.8

TRIM49B-201, Transcript of tripartite motif containing 49B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM49B, Length 1,534 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49B-201ENST00000332682 NISCHQ9Y2I1 1504 aa28.16■■■□□ 2.1
TRIM49B-201ENST00000332682 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
TRIM49B-201ENST00000332682 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
TRIM49B-201ENST00000332682 ABCC9O60706 1549 aa23.56■■□□□ 1.36
TRIM49B-201ENST00000332682 DCAF1Q9Y4B6 1507 aa23.32■■□□□ 1.32
TRIM49B-201ENST00000332682 DCAF8L2P0C7V8 631 aa23.2■■□□□ 1.3
TRIM49B-201ENST00000332682 MYO15BQ96JP2 1530 aa23.16■■□□□ 1.3
TRIM49B-201ENST00000332682 NACADO15069 1562 aa23.08■■□□□ 1.29
TRIM49B-201ENST00000332682 RB1CC1Q8TDY2 1594 aa22.94■■□□□ 1.26
TRIM49B-201ENST00000332682 SHROOM4Q9ULL8 1493 aa22.68■■□□□ 1.22
TRIM49B-201ENST00000332682 SCRIBQ14160 1630 aa22.66■■□□□ 1.22
TRIM49B-201ENST00000332682 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
TRIM49B-201ENST00000332682 BICRAQ9NZM4 1560 aa22.27■■□□□ 1.16
TRIM49B-201ENST00000332682 PABPN1Q86U42 306 aaKnown RBP eCLIP22.12■■□□□ 1.13
TRIM49B-201ENST00000332682 CECR2Q9BXF3 1484 aa21.88■■□□□ 1.09
TRIM49B-201ENST00000332682 BAZ1AQ9NRL2 1556 aaPredicted RBP21.78■■□□□ 1.08
TRIM49B-201ENST00000332682 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
TRIM49B-201ENST00000332682 SMARCA4P51532 1647 aa21.73■■□□□ 1.07
TRIM49B-201ENST00000332682 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
TRIM49B-201ENST00000332682 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
TRIM49B-201ENST00000332682 EIF4G1Q04637 1599 aaKnown RBP21.62■■□□□ 1.05
TRIM49B-201ENST00000332682 WIZO95785 1651 aa21.55■■□□□ 1.04
TRIM49B-201ENST00000332682 PEG3Q9GZU2 1588 aa21.49■■□□□ 1.03
TRIM49B-201ENST00000332682 SMARCA2P51531 1590 aa21.41■■□□□ 1.02
TRIM49B-201ENST00000332682 ATAD2BQ9ULI0 1458 aa21.41■■□□□ 1.02
TRIM49B-201ENST00000332682 CC2D2AQ9P2K1 1620 aa21.36■■□□□ 1.01
TRIM49B-201ENST00000332682 TOP2AP11388 1531 aaKnown RBP21.33■■□□□ 1.01
TRIM49B-201ENST00000332682 NCAPD3P42695 1498 aa21.28■■□□□ 1
TRIM49B-201ENST00000332682 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
TRIM49B-201ENST00000332682 HMGXB3Q12766 1538 aa21.26■□□□□ 0.99
TRIM49B-201ENST00000332682 CCDC88BA6NC98 1476 aa21.07■□□□□ 0.96
TRIM49B-201ENST00000332682 DNAJC5BQ9UF47 199 aa21.01■□□□□ 0.95
TRIM49B-201ENST00000332682 CFTRP13569 1480 aa20.73■□□□□ 0.91
TRIM49B-201ENST00000332682 CADPSQ9ULU8 1353 aa20.7■□□□□ 0.9
TRIM49B-201ENST00000332682 PRDM2Q13029 1718 aa20.66■□□□□ 0.9
TRIM49B-201ENST00000332682 LAMC3Q9Y6N6 1575 aa20.63■□□□□ 0.89
TRIM49B-201ENST00000332682 NESP48681 1621 aa20.61■□□□□ 0.89
TRIM49B-201ENST00000332682 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
TRIM49B-201ENST00000332682 ABCC8Q09428 1581 aa20.55■□□□□ 0.88
TRIM49B-201ENST00000332682 FANCD2Q9BXW9 1451 aa20.48■□□□□ 0.87
TRIM49B-201ENST00000332682 WRNQ14191 1432 aaPredicted RBP eCLIP20.44■□□□□ 0.86
TRIM49B-201ENST00000332682 PDS5BQ9NTI5 1447 aa20.44■□□□□ 0.86
TRIM49B-201ENST00000332682 SYNJ1O43426 1573 aa20.41■□□□□ 0.86
TRIM49B-201ENST00000332682 KIF21AQ7Z4S6 1674 aa20.4■□□□□ 0.86
TRIM49B-201ENST00000332682 TRIM41Q8WV44 630 aa20.39■□□□□ 0.85
TRIM49B-201ENST00000332682 CEP164Q9UPV0 1460 aa20.39■□□□□ 0.85
TRIM49B-201ENST00000332682 CUX1P39880 1505 aa20.36■□□□□ 0.85
TRIM49B-201ENST00000332682 TOP2BQ02880 1626 aa20.35■□□□□ 0.85
TRIM49B-201ENST00000332682 BIVM-ERCC5R4GMW8 1640 aa20.34■□□□□ 0.85
TRIM49B-201ENST00000332682 AEBP2Q6ZN18 517 aaPredicted RBP20.28■□□□□ 0.84
TRIM49B-201ENST00000332682 DNMBPQ6XZF7 1577 aa20.27■□□□□ 0.84
TRIM49B-201ENST00000332682 URB2Q14146 1524 aaKnown RBP20.25■□□□□ 0.83
TRIM49B-201ENST00000332682 TOPBP1Q92547 1522 aa20.24■□□□□ 0.83
TRIM49B-201ENST00000332682 ERCC6Q03468 1493 aa20.24■□□□□ 0.83
TRIM49B-201ENST00000332682 MRC2Q9UBG0 1479 aa20.21■□□□□ 0.83
TRIM49B-201ENST00000332682 FGD5Q6ZNL6 1462 aa20.16■□□□□ 0.82
TRIM49B-201ENST00000332682 THOC2Q8NI27 1593 aaKnown RBP20.16■□□□□ 0.82
TRIM49B-201ENST00000332682 WDR62O43379 1518 aa20.15■□□□□ 0.82
TRIM49B-201ENST00000332682 POLA1P09884 1462 aaPredicted RBP20.11■□□□□ 0.81
TRIM49B-201ENST00000332682 SOGA1O94964 1423 aa20.08■□□□□ 0.8
TRIM49B-201ENST00000332682 RUSC2Q8N2Y8 1516 aa20.02■□□□□ 0.8
TRIM49B-201ENST00000332682 RAD54L2Q9Y4B4 1467 aa20.02■□□□□ 0.8
TRIM49B-201ENST00000332682 EEA1Q15075 1411 aa20.01■□□□□ 0.79
TRIM49B-201ENST00000332682 WDR97A6NE52 1622 aa20■□□□□ 0.79
TRIM49B-201ENST00000332682 ABCA10Q8WWZ4 1543 aa19.99■□□□□ 0.79
TRIM49B-201ENST00000332682 CUX2O14529 1486 aa19.99■□□□□ 0.79
TRIM49B-201ENST00000332682 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
TRIM49B-201ENST00000332682 TARBP1Q13395 1621 aaKnown RBP19.98■□□□□ 0.79
TRIM49B-201ENST00000332682 KIF27Q86VH2 1401 aa19.94■□□□□ 0.78
TRIM49B-201ENST00000332682 IFT140Q96RY7 1462 aa19.92■□□□□ 0.78
TRIM49B-201ENST00000332682 ABCA5Q8WWZ7 1642 aa19.88■□□□□ 0.77
TRIM49B-201ENST00000332682 CSRNP3Q8WYN3 585 aa19.86■□□□□ 0.77
TRIM49B-201ENST00000332682 TDRD9Q8NDG6 1382 aaKnown RBP19.83■□□□□ 0.77
TRIM49B-201ENST00000332682 ZNF608Q9ULD9 1512 aaPredicted RBP19.82■□□□□ 0.76
TRIM49B-201ENST00000332682 GAPVD1Q14C86 1478 aa19.81■□□□□ 0.76
TRIM49B-201ENST00000332682 KIF21BO75037 1637 aa19.8■□□□□ 0.76
TRIM49B-201ENST00000332682 IGF1RP08069 1367 aa19.78■□□□□ 0.76
TRIM49B-201ENST00000332682 EIF4G3O43432 1585 aaKnown RBP19.78■□□□□ 0.76
TRIM49B-201ENST00000332682 AQRO60306 1485 aaKnown RBP eCLIP19.77■□□□□ 0.75
TRIM49B-201ENST00000332682 PRXQ9BXM0 1461 aa19.77■□□□□ 0.75
TRIM49B-201ENST00000332682 LOC105371045A0A1W2PR82 267 aa19.76■□□□□ 0.75
TRIM49B-201ENST00000332682 ERICH3Q5RHP9 1530 aa19.76■□□□□ 0.75
TRIM49B-201ENST00000332682 PBRM1Q86U86 1689 aa19.76■□□□□ 0.75
TRIM49B-201ENST00000332682 CUL7Q14999 1698 aa19.72■□□□□ 0.75
TRIM49B-201ENST00000332682 GOLGA3Q08378 1498 aa19.72■□□□□ 0.75
TRIM49B-201ENST00000332682 GRIN2BQ13224 1484 aa19.7■□□□□ 0.74
TRIM49B-201ENST00000332682 RAPGEF2Q9Y4G8 1499 aa19.7■□□□□ 0.74
TRIM49B-201ENST00000332682 EHMT2Q96KQ7 1210 aa19.69■□□□□ 0.74
TRIM49B-201ENST00000332682 CARMIL1Q5VZK9 1371 aa19.68■□□□□ 0.74
TRIM49B-201ENST00000332682 ADAMTS12P58397 1594 aa19.64■□□□□ 0.73
TRIM49B-201ENST00000332682 SNAPC4Q5SXM2 1469 aa19.61■□□□□ 0.73
TRIM49B-201ENST00000332682 FHAD1B1AJZ9 1412 aa19.59■□□□□ 0.73
TRIM49B-201ENST00000332682 MAGI1Q96QZ7 1491 aaPredicted RBP19.59■□□□□ 0.73
TRIM49B-201ENST00000332682 TNIKQ9UKE5 1360 aa19.58■□□□□ 0.72
TRIM49B-201ENST00000332682 UBTFP17480 764 aaKnown RBP19.56■□□□□ 0.72
TRIM49B-201ENST00000332682 SYNJ2O15056 1496 aa19.5■□□□□ 0.71
TRIM49B-201ENST00000332682 GRIN2AQ12879 1464 aa19.47■□□□□ 0.71
TRIM49B-201ENST00000332682 CTTNBP2Q8WZ74 1663 aa19.47■□□□□ 0.71
TRIM49B-201ENST00000332682 CEP162Q5TB80 1403 aa19.46■□□□□ 0.71
TRIM49B-201ENST00000332682 CHD1O14646 1710 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms