RNA–Protein interactions for RNA: ENST00000329913.3

GDF3-201, Transcript of growth differentiation factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GDF3, Length 1,239 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDF3-201ENST00000329913 NISCHQ9Y2I1 1504 aa23.77■■□□□ 1.4
GDF3-201ENST00000329913 AEBP2Q6ZN18 517 aaPredicted RBP22.8■■□□□ 1.24
GDF3-201ENST00000329913 CHIC1Q5VXU3 224 aa22.48■■□□□ 1.19
GDF3-201ENST00000329913 ABCC9O60706 1549 aa21.71■■□□□ 1.07
GDF3-201ENST00000329913 CCDC180Q9P1Z9 1646 aa21.33■■□□□ 1
GDF3-201ENST00000329913 DNAJC5BQ9UF47 199 aa20.53■□□□□ 0.88
GDF3-201ENST00000329913 RB1CC1Q8TDY2 1594 aa20.42■□□□□ 0.86
GDF3-201ENST00000329913 DCAF8L2P0C7V8 631 aa20.32■□□□□ 0.84
GDF3-201ENST00000329913 PABPN1Q86U42 306 aaKnown RBP eCLIP20.23■□□□□ 0.83
GDF3-201ENST00000329913 NACADO15069 1562 aa20.19■□□□□ 0.82
GDF3-201ENST00000329913 UNC13AQ9UPW8 1703 aa20.03■□□□□ 0.8
GDF3-201ENST00000329913 BICRAQ9NZM4 1560 aa19.91■□□□□ 0.78
GDF3-201ENST00000329913 PHF23Q9BUL5 403 aaPredicted RBP19.76■□□□□ 0.75
GDF3-201ENST00000329913 MYO15BQ96JP2 1530 aa19.76■□□□□ 0.75
GDF3-201ENST00000329913 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
GDF3-201ENST00000329913 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
GDF3-201ENST00000329913 CC2D2AQ9P2K1 1620 aa19.53■□□□□ 0.72
GDF3-201ENST00000329913 CECR2Q9BXF3 1484 aa19.5■□□□□ 0.71
GDF3-201ENST00000329913 DCAF1Q9Y4B6 1507 aa19.49■□□□□ 0.71
GDF3-201ENST00000329913 EIF4G1Q04637 1599 aaKnown RBP19.42■□□□□ 0.7
GDF3-201ENST00000329913 SHROOM4Q9ULL8 1493 aa19.4■□□□□ 0.7
GDF3-201ENST00000329913 SENP3Q9H4L4 574 aaPredicted RBP19.37■□□□□ 0.69
GDF3-201ENST00000329913 DNAJC5Q9H3Z4 198 aa18.82■□□□□ 0.6
GDF3-201ENST00000329913 ERCC6Q03468 1493 aa18.7■□□□□ 0.58
GDF3-201ENST00000329913 NCAPD3P42695 1498 aa18.66■□□□□ 0.58
GDF3-201ENST00000329913 ATAD2BQ9ULI0 1458 aa18.66■□□□□ 0.58
GDF3-201ENST00000329913 NESP48681 1621 aa18.62■□□□□ 0.57
GDF3-201ENST00000329913 SMARCA4P51532 1647 aa18.61■□□□□ 0.57
GDF3-201ENST00000329913 CUX2O14529 1486 aa18.59■□□□□ 0.57
GDF3-201ENST00000329913 SMARCA2P51531 1590 aa18.53■□□□□ 0.56
GDF3-201ENST00000329913 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
GDF3-201ENST00000329913 BAZ1BQ9UIG0 1483 aaKnown RBP18.48■□□□□ 0.55
GDF3-201ENST00000329913 BAZ1AQ9NRL2 1556 aaPredicted RBP18.43■□□□□ 0.54
GDF3-201ENST00000329913 MROH2BQ7Z745 1585 aa18.4■□□□□ 0.54
GDF3-201ENST00000329913 THOC2Q8NI27 1593 aaKnown RBP18.38■□□□□ 0.53
GDF3-201ENST00000329913 PLPPR3Q6T4P5 718 aa18.33■□□□□ 0.52
GDF3-201ENST00000329913 PEG3Q9GZU2 1588 aa18.32■□□□□ 0.52
GDF3-201ENST00000329913 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
GDF3-201ENST00000329913 LAMC3Q9Y6N6 1575 aa18.27■□□□□ 0.52
GDF3-201ENST00000329913 WIZO95785 1651 aa18.18■□□□□ 0.5
GDF3-201ENST00000329913 PDS5BQ9NTI5 1447 aa18.18■□□□□ 0.5
GDF3-201ENST00000329913 CADPSQ9ULU8 1353 aa18.13■□□□□ 0.49
GDF3-201ENST00000329913 TRIM41Q8WV44 630 aa18.12■□□□□ 0.49
GDF3-201ENST00000329913 MRC2Q9UBG0 1479 aa18.1■□□□□ 0.49
GDF3-201ENST00000329913 WDR62O43379 1518 aa18.04■□□□□ 0.48
GDF3-201ENST00000329913 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
GDF3-201ENST00000329913 FANCD2Q9BXW9 1451 aa17.98■□□□□ 0.47
GDF3-201ENST00000329913 RSF1Q96T23 1441 aaPredicted RBP17.91■□□□□ 0.46
GDF3-201ENST00000329913 FOXD1Q16676 465 aa17.91■□□□□ 0.46
GDF3-201ENST00000329913 CFTRP13569 1480 aa17.88■□□□□ 0.45
GDF3-201ENST00000329913 URB2Q14146 1524 aaKnown RBP17.88■□□□□ 0.45
GDF3-201ENST00000329913 TOP2AP11388 1531 aaKnown RBP17.87■□□□□ 0.45
GDF3-201ENST00000329913 OSCARQ8IYS5 282 aa17.74■□□□□ 0.43
GDF3-201ENST00000329913 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
GDF3-201ENST00000329913 CCDC88BA6NC98 1476 aa17.7■□□□□ 0.42
GDF3-201ENST00000329913 PRDM2Q13029 1718 aa17.66■□□□□ 0.42
GDF3-201ENST00000329913 RIMBP3CA6NJZ7 1639 aa17.62■□□□□ 0.41
GDF3-201ENST00000329913 RIMBP3BA6NNM3 1639 aa17.62■□□□□ 0.41
GDF3-201ENST00000329913 RIMBP3Q9UFD9 1639 aa17.62■□□□□ 0.41
GDF3-201ENST00000329913 TOPBP1Q92547 1522 aa17.62■□□□□ 0.41
GDF3-201ENST00000329913 IFT140Q96RY7 1462 aa17.6■□□□□ 0.41
GDF3-201ENST00000329913 EIF4G3O43432 1585 aaKnown RBP17.57■□□□□ 0.4
GDF3-201ENST00000329913 ARHGEF11O15085 1522 aa17.54■□□□□ 0.4
GDF3-201ENST00000329913 AQRO60306 1485 aaKnown RBP eCLIP17.53■□□□□ 0.4
GDF3-201ENST00000329913 DNMBPQ6XZF7 1577 aa17.51■□□□□ 0.39
GDF3-201ENST00000329913 FBLN2P98095 1184 aa17.48■□□□□ 0.39
GDF3-201ENST00000329913 CHD1O14646 1710 aa17.47■□□□□ 0.39
GDF3-201ENST00000329913 CYB5RLQ6IPT4 315 aa17.46■□□□□ 0.39
GDF3-201ENST00000329913 TARBP1Q13395 1621 aaKnown RBP17.46■□□□□ 0.39
GDF3-201ENST00000329913 RAD54L2Q9Y4B4 1467 aa17.45■□□□□ 0.38
GDF3-201ENST00000329913 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
GDF3-201ENST00000329913 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
GDF3-201ENST00000329913 TDRD9Q8NDG6 1382 aaKnown RBP17.4■□□□□ 0.38
GDF3-201ENST00000329913 ARAP1Q96P48 1450 aa17.38■□□□□ 0.37
GDF3-201ENST00000329913 PPP6R1Q9UPN7 881 aa17.35■□□□□ 0.37
GDF3-201ENST00000329913 TRHP20396 242 aaPredicted RBP17.34■□□□□ 0.37
GDF3-201ENST00000329913 SNAPC4Q5SXM2 1469 aa17.33■□□□□ 0.37
GDF3-201ENST00000329913 SOGA1O94964 1423 aa17.33■□□□□ 0.36
GDF3-201ENST00000329913 ADRA2BP18089 450 aa17.33■□□□□ 0.36
GDF3-201ENST00000329913 FGD5Q6ZNL6 1462 aa17.32■□□□□ 0.36
GDF3-201ENST00000329913 CUX1P39880 1505 aa17.29■□□□□ 0.36
GDF3-201ENST00000329913 CLASP1Q7Z460 1538 aa17.22■□□□□ 0.35
GDF3-201ENST00000329913 CHMP7Q8WUX9 453 aaPredicted RBP17.22■□□□□ 0.35
GDF3-201ENST00000329913 GRIN2BQ13224 1484 aa17.18■□□□□ 0.34
GDF3-201ENST00000329913 SYNJ1O43426 1573 aa17.16■□□□□ 0.34
GDF3-201ENST00000329913 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
GDF3-201ENST00000329913 MAGI1Q96QZ7 1491 aaPredicted RBP17.15■□□□□ 0.34
GDF3-201ENST00000329913 PBRM1Q86U86 1689 aa17.14■□□□□ 0.33
GDF3-201ENST00000329913 SUPT5HO00267 1087 aaKnown RBP17.14■□□□□ 0.33
GDF3-201ENST00000329913 SYNJ2O15056 1496 aa17.13■□□□□ 0.33
GDF3-201ENST00000329913 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
GDF3-201ENST00000329913 ERCC6L2Q5T890 1561 aa17.07■□□□□ 0.32
GDF3-201ENST00000329913 ABCA5Q8WWZ7 1642 aa17.07■□□□□ 0.32
GDF3-201ENST00000329913 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
GDF3-201ENST00000329913 GRIN2AQ12879 1464 aa16.99■□□□□ 0.31
GDF3-201ENST00000329913 ADAMTS12P58397 1594 aa16.98■□□□□ 0.31
GDF3-201ENST00000329913 CEP170Q5SW79 1584 aa16.98■□□□□ 0.31
GDF3-201ENST00000329913 PIAS4Q8N2W9 510 aaPredicted RBP16.94■□□□□ 0.3
GDF3-201ENST00000329913 WRNQ14191 1432 aaPredicted RBP eCLIP16.94■□□□□ 0.3
GDF3-201ENST00000329913 NUP160Q12769 1436 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms