RNA–Protein interactions for RNA: ENST00000327908.3

LRIT3-201, Transcript of leucine rich repeat, Ig-like and transmembrane domains 3, humanhuman

TSL 2 BASIC

Gene LRIT3, Length 3,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIT3-201ENST00000327908 NISCHQ9Y2I1 1504 aa12.13□□□□□ -0.47
LRIT3-201ENST00000327908 CCDC180Q9P1Z9 1646 aa10.87□□□□□ -0.67
LRIT3-201ENST00000327908 MYO15BQ96JP2 1530 aa10.23□□□□□ -0.77
LRIT3-201ENST00000327908 DCAF1Q9Y4B6 1507 aa10.21□□□□□ -0.77
LRIT3-201ENST00000327908 ABCC9O60706 1549 aa10.17□□□□□ -0.78
LRIT3-201ENST00000327908 NACADO15069 1562 aa10.16□□□□□ -0.78
LRIT3-201ENST00000327908 ZCCHC6Q5VYS8 1495 aaKnown RBP10.15□□□□□ -0.78
LRIT3-201ENST00000327908 RB1CC1Q8TDY2 1594 aa10.1□□□□□ -0.79
LRIT3-201ENST00000327908 SHROOM4Q9ULL8 1493 aa9.89□□□□□ -0.83
LRIT3-201ENST00000327908 DCAF8L2P0C7V8 631 aa9.84□□□□□ -0.83
LRIT3-201ENST00000327908 SCRIBQ14160 1630 aa9.68□□□□□ -0.86
LRIT3-201ENST00000327908 UNC13AQ9UPW8 1703 aa9.67□□□□□ -0.86
LRIT3-201ENST00000327908 BICRAQ9NZM4 1560 aa9.6□□□□□ -0.87
LRIT3-201ENST00000327908 BAZ1AQ9NRL2 1556 aaPredicted RBP9.47□□□□□ -0.89
LRIT3-201ENST00000327908 PABPN1Q86U42 306 aaKnown RBP eCLIP9.43□□□□□ -0.9
LRIT3-201ENST00000327908 SMARCA2P51531 1590 aa9.39□□□□□ -0.91
LRIT3-201ENST00000327908 EIF4G1Q04637 1599 aaKnown RBP9.39□□□□□ -0.91
LRIT3-201ENST00000327908 SMARCA4P51532 1647 aa9.38□□□□□ -0.91
LRIT3-201ENST00000327908 PEG3Q9GZU2 1588 aa9.36□□□□□ -0.91
LRIT3-201ENST00000327908 HMGXB3Q12766 1538 aa9.32□□□□□ -0.92
LRIT3-201ENST00000327908 NCAPD3P42695 1498 aa9.29□□□□□ -0.92
LRIT3-201ENST00000327908 CC2D2AQ9P2K1 1620 aa9.28□□□□□ -0.92
LRIT3-201ENST00000327908 ATAD2BQ9ULI0 1458 aa9.26□□□□□ -0.93
LRIT3-201ENST00000327908 CECR2Q9BXF3 1484 aa9.25□□□□□ -0.93
LRIT3-201ENST00000327908 BAZ1BQ9UIG0 1483 aaKnown RBP9.24□□□□□ -0.93
LRIT3-201ENST00000327908 MROH2BQ7Z745 1585 aa9.24□□□□□ -0.93
LRIT3-201ENST00000327908 RSF1Q96T23 1441 aaPredicted RBP9.23□□□□□ -0.93
LRIT3-201ENST00000327908 TOP2AP11388 1531 aaKnown RBP9.21□□□□□ -0.93
LRIT3-201ENST00000327908 WIZO95785 1651 aa9.13□□□□□ -0.95
LRIT3-201ENST00000327908 LAMC3Q9Y6N6 1575 aa9.07□□□□□ -0.96
LRIT3-201ENST00000327908 PRDM2Q13029 1718 aa9.02□□□□□ -0.97
LRIT3-201ENST00000327908 PDS5BQ9NTI5 1447 aa9.01□□□□□ -0.97
LRIT3-201ENST00000327908 CADPSQ9ULU8 1353 aa9□□□□□ -0.97
LRIT3-201ENST00000327908 DNAJC5BQ9UF47 199 aa8.99□□□□□ -0.97
LRIT3-201ENST00000327908 CCDC88BA6NC98 1476 aa8.99□□□□□ -0.97
LRIT3-201ENST00000327908 SUPT5HO00267 1087 aaKnown RBP8.98□□□□□ -0.97
LRIT3-201ENST00000327908 CFTRP13569 1480 aa8.98□□□□□ -0.97
LRIT3-201ENST00000327908 ABCC8Q09428 1581 aa8.96□□□□□ -0.97
LRIT3-201ENST00000327908 CEP164Q9UPV0 1460 aa8.9□□□□□ -0.98
LRIT3-201ENST00000327908 ERCC6Q03468 1493 aa8.89□□□□□ -0.99
LRIT3-201ENST00000327908 FANCD2Q9BXW9 1451 aa8.87□□□□□ -0.99
LRIT3-201ENST00000327908 MRC2Q9UBG0 1479 aa8.86□□□□□ -0.99
LRIT3-201ENST00000327908 CUX2O14529 1486 aa8.85□□□□□ -0.99
LRIT3-201ENST00000327908 WDR97A6NE52 1622 aa8.84□□□□□ -1
LRIT3-201ENST00000327908 DNMBPQ6XZF7 1577 aa8.83□□□□□ -1
LRIT3-201ENST00000327908 WDR62O43379 1518 aa8.81□□□□□ -1
LRIT3-201ENST00000327908 NESP48681 1621 aa8.79□□□□□ -1
LRIT3-201ENST00000327908 KIF21AQ7Z4S6 1674 aa8.79□□□□□ -1
LRIT3-201ENST00000327908 THOC2Q8NI27 1593 aaKnown RBP8.78□□□□□ -1
LRIT3-201ENST00000327908 BIVM-ERCC5R4GMW8 1640 aa8.77□□□□□ -1.01
LRIT3-201ENST00000327908 WRNQ14191 1432 aaPredicted RBP eCLIP8.77□□□□□ -1.01
LRIT3-201ENST00000327908 TOP2BQ02880 1626 aa8.75□□□□□ -1.01
LRIT3-201ENST00000327908 IFT140Q96RY7 1462 aa8.75□□□□□ -1.01
LRIT3-201ENST00000327908 TOPBP1Q92547 1522 aa8.75□□□□□ -1.01
LRIT3-201ENST00000327908 EEA1Q15075 1411 aa8.71□□□□□ -1.01
LRIT3-201ENST00000327908 URB2Q14146 1524 aaKnown RBP8.71□□□□□ -1.02
LRIT3-201ENST00000327908 CUX1P39880 1505 aa8.69□□□□□ -1.02
LRIT3-201ENST00000327908 ABCA10Q8WWZ4 1543 aa8.67□□□□□ -1.02
LRIT3-201ENST00000327908 FGD5Q6ZNL6 1462 aa8.66□□□□□ -1.02
LRIT3-201ENST00000327908 POLA1P09884 1462 aaPredicted RBP8.65□□□□□ -1.02
LRIT3-201ENST00000327908 SOGA1O94964 1423 aa8.65□□□□□ -1.02
LRIT3-201ENST00000327908 SYNJ1O43426 1573 aa8.64□□□□□ -1.03
LRIT3-201ENST00000327908 KIF27Q86VH2 1401 aa8.63□□□□□ -1.03
LRIT3-201ENST00000327908 TRIM41Q8WV44 630 aa8.62□□□□□ -1.03
LRIT3-201ENST00000327908 TARBP1Q13395 1621 aaKnown RBP8.62□□□□□ -1.03
LRIT3-201ENST00000327908 ERICH3Q5RHP9 1530 aa8.61□□□□□ -1.03
LRIT3-201ENST00000327908 GRIN2BQ13224 1484 aa8.6□□□□□ -1.03
LRIT3-201ENST00000327908 MAGI1Q96QZ7 1491 aaPredicted RBP8.6□□□□□ -1.03
LRIT3-201ENST00000327908 CUL7Q14999 1698 aa8.6□□□□□ -1.03
LRIT3-201ENST00000327908 ABCA5Q8WWZ7 1642 aa8.59□□□□□ -1.03
LRIT3-201ENST00000327908 GAPVD1Q14C86 1478 aa8.57□□□□□ -1.04
LRIT3-201ENST00000327908 EIF4G3O43432 1585 aaKnown RBP8.56□□□□□ -1.04
LRIT3-201ENST00000327908 CHIC1Q5VXU3 224 aa8.55□□□□□ -1.04
LRIT3-201ENST00000327908 PBRM1Q86U86 1689 aa8.55□□□□□ -1.04
LRIT3-201ENST00000327908 FHAD1B1AJZ9 1412 aa8.54□□□□□ -1.04
LRIT3-201ENST00000327908 RAD54L2Q9Y4B4 1467 aa8.52□□□□□ -1.05
LRIT3-201ENST00000327908 SYNJ2O15056 1496 aa8.51□□□□□ -1.05
LRIT3-201ENST00000327908 ADAMTS12P58397 1594 aa8.51□□□□□ -1.05
LRIT3-201ENST00000327908 KIF21BO75037 1637 aa8.49□□□□□ -1.05
LRIT3-201ENST00000327908 RAPGEF2Q9Y4G8 1499 aa8.48□□□□□ -1.05
LRIT3-201ENST00000327908 SNAPC4Q5SXM2 1469 aa8.47□□□□□ -1.05
LRIT3-201ENST00000327908 TDRD9Q8NDG6 1382 aaKnown RBP8.47□□□□□ -1.05
LRIT3-201ENST00000327908 FAM9AQ8IZU1 332 aaPredicted RBP8.46□□□□□ -1.05
LRIT3-201ENST00000327908 ZNF608Q9ULD9 1512 aaPredicted RBP8.46□□□□□ -1.05
LRIT3-201ENST00000327908 CSRNP3Q8WYN3 585 aa8.46□□□□□ -1.06
LRIT3-201ENST00000327908 CARMIL1Q5VZK9 1371 aa8.46□□□□□ -1.06
LRIT3-201ENST00000327908 IGF1RP08069 1367 aa8.45□□□□□ -1.06
LRIT3-201ENST00000327908 AQRO60306 1485 aaKnown RBP eCLIP8.45□□□□□ -1.06
LRIT3-201ENST00000327908 GOLGA3Q08378 1498 aa8.44□□□□□ -1.06
LRIT3-201ENST00000327908 PRXQ9BXM0 1461 aa8.44□□□□□ -1.06
LRIT3-201ENST00000327908 GRIN2AQ12879 1464 aa8.44□□□□□ -1.06
LRIT3-201ENST00000327908 CHMP7Q8WUX9 453 aaPredicted RBP8.43□□□□□ -1.06
LRIT3-201ENST00000327908 NUP160Q12769 1436 aa8.42□□□□□ -1.06
LRIT3-201ENST00000327908 KIAA0586Q9BVV6 1533 aa8.4□□□□□ -1.06
LRIT3-201ENST00000327908 CHD1O14646 1710 aa8.39□□□□□ -1.07
LRIT3-201ENST00000327908 CTTNBP2Q8WZ74 1663 aa8.39□□□□□ -1.07
LRIT3-201ENST00000327908 OSCARQ8IYS5 282 aa8.39□□□□□ -1.07
LRIT3-201ENST00000327908 EFCAB5A4FU69 1503 aa8.38□□□□□ -1.07
LRIT3-201ENST00000327908 CARMIL2Q6F5E8 1435 aa8.37□□□□□ -1.07
LRIT3-201ENST00000327908 CLASP1Q7Z460 1538 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms