RNA–Protein interactions for RNA: ENST00000324677.11

SSH2-202, Transcript of slingshot protein phosphatase 2, humanhuman

TSL 1 (best)

Gene SSH2, Length 913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH2-202ENST00000324677 NISCHQ9Y2I1 1504 aa49.85■■■■■ 5.57
SSH2-202ENST00000324677 CCDC180Q9P1Z9 1646 aa44.79■■■■■ 4.76
SSH2-202ENST00000324677 ABCC9O60706 1549 aa44.71■■■■■ 4.75
SSH2-202ENST00000324677 RB1CC1Q8TDY2 1594 aa42.6■■■■■ 4.41
SSH2-202ENST00000324677 NACADO15069 1562 aa42.3■■■■■ 4.36
SSH2-202ENST00000324677 DCAF8L2P0C7V8 631 aa42.01■■■■■ 4.32
SSH2-202ENST00000324677 DNAJC5BQ9UF47 199 aa41.93■■■■■ 4.3
SSH2-202ENST00000324677 MYO15BQ96JP2 1530 aa41.73■■■■■ 4.27
SSH2-202ENST00000324677 UNC13AQ9UPW8 1703 aa41.72■■■■■ 4.27
SSH2-202ENST00000324677 PABPN1Q86U42 306 aaKnown RBP eCLIP41.6■■■■■ 4.25
SSH2-202ENST00000324677 BICRAQ9NZM4 1560 aa41.37■■■■■ 4.21
SSH2-202ENST00000324677 ZCCHC6Q5VYS8 1495 aaKnown RBP41.32■■■■■ 4.2
SSH2-202ENST00000324677 DCAF1Q9Y4B6 1507 aa41.19■■■■■ 4.18
SSH2-202ENST00000324677 SHROOM4Q9ULL8 1493 aa40.8■■■■■ 4.12
SSH2-202ENST00000324677 SCRIBQ14160 1630 aa40.77■■■■■ 4.12
SSH2-202ENST00000324677 CC2D2AQ9P2K1 1620 aa40.43■■■■■ 4.06
SSH2-202ENST00000324677 EIF4G1Q04637 1599 aaKnown RBP40.34■■■■■ 4.05
SSH2-202ENST00000324677 CECR2Q9BXF3 1484 aa40.27■■■■■ 4.04
SSH2-202ENST00000324677 NCAPD3P42695 1498 aa39.04■■■■□ 3.84
SSH2-202ENST00000324677 ATAD2BQ9ULI0 1458 aa38.92■■■■□ 3.82
SSH2-202ENST00000324677 SMARCA4P51532 1647 aa38.91■■■■□ 3.82
SSH2-202ENST00000324677 SMARCA2P51531 1590 aa38.82■■■■□ 3.8
SSH2-202ENST00000324677 HMGXB3Q12766 1538 aa38.77■■■■□ 3.8
SSH2-202ENST00000324677 BAZ1AQ9NRL2 1556 aaPredicted RBP38.7■■■■□ 3.79
SSH2-202ENST00000324677 ERCC6Q03468 1493 aa38.6■■■■□ 3.77
SSH2-202ENST00000324677 CUX2O14529 1486 aa38.54■■■■□ 3.76
SSH2-202ENST00000324677 BAZ1BQ9UIG0 1483 aaKnown RBP38.54■■■■□ 3.76
SSH2-202ENST00000324677 PEG3Q9GZU2 1588 aa38.53■■■■□ 3.76
SSH2-202ENST00000324677 DNAJC5Q9H3Z4 198 aa38.5■■■■□ 3.75
SSH2-202ENST00000324677 NESP48681 1621 aa38.42■■■■□ 3.74
SSH2-202ENST00000324677 MROH2BQ7Z745 1585 aa38.41■■■■□ 3.74
SSH2-202ENST00000324677 LAMC3Q9Y6N6 1575 aa38.19■■■■□ 3.7
SSH2-202ENST00000324677 THOC2Q8NI27 1593 aaKnown RBP38.07■■■■□ 3.69
SSH2-202ENST00000324677 KIF21AQ7Z4S6 1674 aa37.99■■■■□ 3.67
SSH2-202ENST00000324677 WIZO95785 1651 aa37.98■■■■□ 3.67
SSH2-202ENST00000324677 PDS5BQ9NTI5 1447 aa37.92■■■■□ 3.66
SSH2-202ENST00000324677 CADPSQ9ULU8 1353 aa37.83■■■■□ 3.65
SSH2-202ENST00000324677 RSF1Q96T23 1441 aaPredicted RBP37.61■■■■□ 3.61
SSH2-202ENST00000324677 MRC2Q9UBG0 1479 aa37.6■■■■□ 3.61
SSH2-202ENST00000324677 WDR62O43379 1518 aa37.53■■■■□ 3.6
SSH2-202ENST00000324677 TOP2AP11388 1531 aaKnown RBP37.48■■■■□ 3.59
SSH2-202ENST00000324677 CEP164Q9UPV0 1460 aa37.45■■■■□ 3.59
SSH2-202ENST00000324677 CFTRP13569 1480 aa37.42■■■■□ 3.58
SSH2-202ENST00000324677 FANCD2Q9BXW9 1451 aa37.41■■■■□ 3.58
SSH2-202ENST00000324677 PRDM2Q13029 1718 aa37.16■■■■□ 3.54
SSH2-202ENST00000324677 URB2Q14146 1524 aaKnown RBP37.12■■■■□ 3.53
SSH2-202ENST00000324677 CCDC88BA6NC98 1476 aa37.04■■■■□ 3.52
SSH2-202ENST00000324677 TRIM41Q8WV44 630 aa36.79■■■■□ 3.48
SSH2-202ENST00000324677 OSCARQ8IYS5 282 aa36.76■■■■□ 3.48
SSH2-202ENST00000324677 TOPBP1Q92547 1522 aa36.72■■■■□ 3.47
SSH2-202ENST00000324677 IFT140Q96RY7 1462 aa36.71■■■■□ 3.47
SSH2-202ENST00000324677 ZNF608Q9ULD9 1512 aaPredicted RBP36.65■■■■□ 3.46
SSH2-202ENST00000324677 ABCC8Q09428 1581 aa36.64■■■■□ 3.46
SSH2-202ENST00000324677 DNMBPQ6XZF7 1577 aa36.6■■■■□ 3.45
SSH2-202ENST00000324677 EIF4G3O43432 1585 aaKnown RBP36.49■■■■□ 3.43
SSH2-202ENST00000324677 TARBP1Q13395 1621 aaKnown RBP36.42■■■■□ 3.42
SSH2-202ENST00000324677 RIMBP3CA6NJZ7 1639 aa36.34■■■■□ 3.41
SSH2-202ENST00000324677 RIMBP3BA6NNM3 1639 aa36.34■■■■□ 3.41
SSH2-202ENST00000324677 RIMBP3Q9UFD9 1639 aa36.34■■■■□ 3.41
SSH2-202ENST00000324677 POLA1P09884 1462 aaPredicted RBP36.34■■■■□ 3.41
SSH2-202ENST00000324677 AQRO60306 1485 aaKnown RBP eCLIP36.31■■■■□ 3.4
SSH2-202ENST00000324677 CHD1O14646 1710 aa36.25■■■■□ 3.39
SSH2-202ENST00000324677 ARHGEF11O15085 1522 aa36.2■■■■□ 3.39
SSH2-202ENST00000324677 RAD54L2Q9Y4B4 1467 aa36.2■■■■□ 3.39
SSH2-202ENST00000324677 SOGA1O94964 1423 aa36.16■■■■□ 3.38
SSH2-202ENST00000324677 FGD5Q6ZNL6 1462 aa36.11■■■■□ 3.37
SSH2-202ENST00000324677 CUX1P39880 1505 aa36.08■■■■□ 3.37
SSH2-202ENST00000324677 TDRD9Q8NDG6 1382 aaKnown RBP36.08■■■■□ 3.37
SSH2-202ENST00000324677 WDR97A6NE52 1622 aa36.05■■■■□ 3.36
SSH2-202ENST00000324677 FBLN2P98095 1184 aa36.04■■■■□ 3.36
SSH2-202ENST00000324677 SNAPC4Q5SXM2 1469 aa35.95■■■■□ 3.35
SSH2-202ENST00000324677 SUPT5HO00267 1087 aaKnown RBP35.9■■■■□ 3.34
SSH2-202ENST00000324677 CYB5RLQ6IPT4 315 aa35.9■■■■□ 3.34
SSH2-202ENST00000324677 MAGI1Q96QZ7 1491 aaPredicted RBP35.86■■■■□ 3.33
SSH2-202ENST00000324677 GRIN2BQ13224 1484 aa35.86■■■■□ 3.33
SSH2-202ENST00000324677 ARAP1Q96P48 1450 aa35.84■■■■□ 3.33
SSH2-202ENST00000324677 CHMP7Q8WUX9 453 aaPredicted RBP35.79■■■■□ 3.32
SSH2-202ENST00000324677 PBRM1Q86U86 1689 aa35.78■■■■□ 3.32
SSH2-202ENST00000324677 CLASP1Q7Z460 1538 aa35.78■■■■□ 3.32
SSH2-202ENST00000324677 SYNJ1O43426 1573 aa35.76■■■■□ 3.32
SSH2-202ENST00000324677 SYNJ2O15056 1496 aa35.74■■■■□ 3.31
SSH2-202ENST00000324677 GAPVD1Q14C86 1478 aa35.73■■■■□ 3.31
SSH2-202ENST00000324677 ABCA10Q8WWZ4 1543 aa35.71■■■■□ 3.31
SSH2-202ENST00000324677 ABCA5Q8WWZ7 1642 aa35.68■■■■□ 3.3
SSH2-202ENST00000324677 BIVM-ERCC5R4GMW8 1640 aa35.56■■■■□ 3.28
SSH2-202ENST00000324677 WRNQ14191 1432 aaPredicted RBP eCLIP35.54■■■■□ 3.28
SSH2-202ENST00000324677 TOP2BQ02880 1626 aa35.54■■■■□ 3.28
SSH2-202ENST00000324677 TRHP20396 242 aaPredicted RBP35.49■■■■□ 3.27
SSH2-202ENST00000324677 ADAMTS12P58397 1594 aa35.4■■■■□ 3.26
SSH2-202ENST00000324677 GRIN2AQ12879 1464 aa35.4■■■■□ 3.26
SSH2-202ENST00000324677 CEP170Q5SW79 1584 aa35.29■■■■□ 3.24
SSH2-202ENST00000324677 NUP160Q12769 1436 aa35.28■■■■□ 3.24
SSH2-202ENST00000324677 ERICH3Q5RHP9 1530 aa35.27■■■■□ 3.24
SSH2-202ENST00000324677 FHAD1B1AJZ9 1412 aa35.27■■■■□ 3.24
SSH2-202ENST00000324677 ERCC6L2Q5T890 1561 aa35.22■■■■□ 3.23
SSH2-202ENST00000324677 SHROOM2Q13796 1616 aa35.16■■■■□ 3.22
SSH2-202ENST00000324677 PRG4Q92954 1404 aaPredicted RBP34.92■■■■□ 3.18
SSH2-202ENST00000324677 RUSC2Q8N2Y8 1516 aa34.91■■■■□ 3.18
SSH2-202ENST00000324677 JPH4Q96JJ6 628 aa34.9■■■■□ 3.18
SSH2-202ENST00000324677 KIF27Q86VH2 1401 aa34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms