RNA–Protein interactions for RNA: ENST00000312196.8

MSL3-201, Transcript of MSL complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSL3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-201ENST00000312196 NISCHQ9Y2I1 1504 aa21.16■□□□□ 0.98
MSL3-201ENST00000312196 CCDC180Q9P1Z9 1646 aa19.11■□□□□ 0.65
MSL3-201ENST00000312196 ABCC9O60706 1549 aa18.84■□□□□ 0.61
MSL3-201ENST00000312196 RB1CC1Q8TDY2 1594 aa18.15■□□□□ 0.5
MSL3-201ENST00000312196 NACADO15069 1562 aa18.08■□□□□ 0.49
MSL3-201ENST00000312196 MYO15BQ96JP2 1530 aa17.97■□□□□ 0.47
MSL3-201ENST00000312196 DNAJC5BQ9UF47 199 aa17.72■□□□□ 0.43
MSL3-201ENST00000312196 DCAF1Q9Y4B6 1507 aa17.69■□□□□ 0.42
MSL3-201ENST00000312196 SHROOM4Q9ULL8 1493 aa17.64■□□□□ 0.41
MSL3-201ENST00000312196 ZCCHC6Q5VYS8 1495 aaKnown RBP17.59■□□□□ 0.41
MSL3-201ENST00000312196 UNC13AQ9UPW8 1703 aa17.58■□□□□ 0.4
MSL3-201ENST00000312196 BICRAQ9NZM4 1560 aa17.55■□□□□ 0.4
MSL3-201ENST00000312196 PABPN1Q86U42 306 aaKnown RBP eCLIP17.43■□□□□ 0.38
MSL3-201ENST00000312196 DCAF8L2P0C7V8 631 aa17.41■□□□□ 0.38
MSL3-201ENST00000312196 CC2D2AQ9P2K1 1620 aa17.13■□□□□ 0.33
MSL3-201ENST00000312196 EIF4G1Q04637 1599 aaKnown RBP17.11■□□□□ 0.33
MSL3-201ENST00000312196 CECR2Q9BXF3 1484 aa17.1■□□□□ 0.33
MSL3-201ENST00000312196 SCRIBQ14160 1630 aa17.09■□□□□ 0.33
MSL3-201ENST00000312196 NCAPD3P42695 1498 aa16.67■□□□□ 0.26
MSL3-201ENST00000312196 CUX2O14529 1486 aa16.58■□□□□ 0.24
MSL3-201ENST00000312196 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
MSL3-201ENST00000312196 SMARCA2P51531 1590 aa16.53■□□□□ 0.24
MSL3-201ENST00000312196 DNAJC5Q9H3Z4 198 aa16.53■□□□□ 0.24
MSL3-201ENST00000312196 ATAD2BQ9ULI0 1458 aa16.5■□□□□ 0.23
MSL3-201ENST00000312196 SMARCA4P51532 1647 aa16.47■□□□□ 0.23
MSL3-201ENST00000312196 PEG3Q9GZU2 1588 aa16.45■□□□□ 0.22
MSL3-201ENST00000312196 BAZ1AQ9NRL2 1556 aaPredicted RBP16.44■□□□□ 0.22
MSL3-201ENST00000312196 ERCC6Q03468 1493 aa16.34■□□□□ 0.21
MSL3-201ENST00000312196 BAZ1BQ9UIG0 1483 aaKnown RBP16.29■□□□□ 0.2
MSL3-201ENST00000312196 LAMC3Q9Y6N6 1575 aa16.29■□□□□ 0.2
MSL3-201ENST00000312196 MROH2BQ7Z745 1585 aa16.2■□□□□ 0.18
MSL3-201ENST00000312196 THOC2Q8NI27 1593 aaKnown RBP16.19■□□□□ 0.18
MSL3-201ENST00000312196 PDS5BQ9NTI5 1447 aa16.16■□□□□ 0.18
MSL3-201ENST00000312196 NESP48681 1621 aa16.14■□□□□ 0.17
MSL3-201ENST00000312196 CADPSQ9ULU8 1353 aa16.07■□□□□ 0.16
MSL3-201ENST00000312196 MRC2Q9UBG0 1479 aa16.01■□□□□ 0.15
MSL3-201ENST00000312196 WDR62O43379 1518 aa16■□□□□ 0.15
MSL3-201ENST00000312196 KIF21AQ7Z4S6 1674 aa16■□□□□ 0.15
MSL3-201ENST00000312196 WIZO95785 1651 aa15.99■□□□□ 0.15
MSL3-201ENST00000312196 RSF1Q96T23 1441 aaPredicted RBP15.95■□□□□ 0.14
MSL3-201ENST00000312196 TOP2AP11388 1531 aaKnown RBP15.95■□□□□ 0.14
MSL3-201ENST00000312196 CFTRP13569 1480 aa15.9■□□□□ 0.14
MSL3-201ENST00000312196 CEP164Q9UPV0 1460 aa15.88■□□□□ 0.13
MSL3-201ENST00000312196 FANCD2Q9BXW9 1451 aa15.83■□□□□ 0.12
MSL3-201ENST00000312196 PRDM2Q13029 1718 aa15.8■□□□□ 0.12
MSL3-201ENST00000312196 URB2Q14146 1524 aaKnown RBP15.69■□□□□ 0.1
MSL3-201ENST00000312196 ABCC8Q09428 1581 aa15.69■□□□□ 0.1
MSL3-201ENST00000312196 CCDC88BA6NC98 1476 aa15.67■□□□□ 0.1
MSL3-201ENST00000312196 IFT140Q96RY7 1462 aa15.65■□□□□ 0.1
MSL3-201ENST00000312196 OSCARQ8IYS5 282 aa15.64■□□□□ 0.09
MSL3-201ENST00000312196 TOPBP1Q92547 1522 aa15.54■□□□□ 0.08
MSL3-201ENST00000312196 DNMBPQ6XZF7 1577 aa15.53■□□□□ 0.08
MSL3-201ENST00000312196 WDR97A6NE52 1622 aa15.52■□□□□ 0.07
MSL3-201ENST00000312196 TRIM41Q8WV44 630 aa15.46■□□□□ 0.07
MSL3-201ENST00000312196 TARBP1Q13395 1621 aaKnown RBP15.43■□□□□ 0.06
MSL3-201ENST00000312196 RIMBP3CA6NJZ7 1639 aa15.42■□□□□ 0.06
MSL3-201ENST00000312196 RIMBP3BA6NNM3 1639 aa15.42■□□□□ 0.06
MSL3-201ENST00000312196 RIMBP3Q9UFD9 1639 aa15.42■□□□□ 0.06
MSL3-201ENST00000312196 ZNF608Q9ULD9 1512 aaPredicted RBP15.42■□□□□ 0.06
MSL3-201ENST00000312196 EIF4G3O43432 1585 aaKnown RBP15.4■□□□□ 0.06
MSL3-201ENST00000312196 ARHGEF11O15085 1522 aa15.37■□□□□ 0.05
MSL3-201ENST00000312196 POLA1P09884 1462 aaPredicted RBP15.34■□□□□ 0.05
MSL3-201ENST00000312196 MAGI1Q96QZ7 1491 aaPredicted RBP15.28■□□□□ 0.04
MSL3-201ENST00000312196 SOGA1O94964 1423 aa15.28■□□□□ 0.04
MSL3-201ENST00000312196 CHD1O14646 1710 aa15.27■□□□□ 0.03
MSL3-201ENST00000312196 AQRO60306 1485 aaKnown RBP eCLIP15.26■□□□□ 0.031e-7■■■■□ 19.5
MSL3-201ENST00000312196 CUX1P39880 1505 aa15.24■□□□□ 0.03
MSL3-201ENST00000312196 CLASP1Q7Z460 1538 aa15.24■□□□□ 0.03
MSL3-201ENST00000312196 GRIN2BQ13224 1484 aa15.23■□□□□ 0.03
MSL3-201ENST00000312196 SYNJ1O43426 1573 aa15.21■□□□□ 0.03
MSL3-201ENST00000312196 FGD5Q6ZNL6 1462 aa15.21■□□□□ 0.03
MSL3-201ENST00000312196 ARAP1Q96P48 1450 aa15.21■□□□□ 0.03
MSL3-201ENST00000312196 SYNJ2O15056 1496 aa15.18■□□□□ 0.02
MSL3-201ENST00000312196 RAD54L2Q9Y4B4 1467 aa15.18■□□□□ 0.02
MSL3-201ENST00000312196 SNAPC4Q5SXM2 1469 aa15.17■□□□□ 0.02
MSL3-201ENST00000312196 BIVM-ERCC5R4GMW8 1640 aa15.16■□□□□ 0.02
MSL3-201ENST00000312196 ABCA10Q8WWZ4 1543 aa15.16■□□□□ 0.02
MSL3-201ENST00000312196 TDRD9Q8NDG6 1382 aaKnown RBP15.13■□□□□ 0.01
MSL3-201ENST00000312196 ABCA5Q8WWZ7 1642 aa15.12■□□□□ 0.01
MSL3-201ENST00000312196 TOP2BQ02880 1626 aa15.12■□□□□ 0.01
MSL3-201ENST00000312196 GAPVD1Q14C86 1478 aa15.1■□□□□ 0.01
MSL3-201ENST00000312196 CYB5RLQ6IPT4 315 aa15.1■□□□□ 0.01
MSL3-201ENST00000312196 PBRM1Q86U86 1689 aa15.09■□□□□ 0.01
MSL3-201ENST00000312196 CHMP7Q8WUX9 453 aaPredicted RBP15.09■□□□□ 0.01
MSL3-201ENST00000312196 WRNQ14191 1432 aaPredicted RBP eCLIP15.06■□□□□ 0
MSL3-201ENST00000312196 FBLN2P98095 1184 aa15.04■□□□□ -0
MSL3-201ENST00000312196 SUPT5HO00267 1087 aaKnown RBP15.03■□□□□ -0
MSL3-201ENST00000312196 NUP160Q12769 1436 aa15.02□□□□□ -0.01
MSL3-201ENST00000312196 ERICH3Q5RHP9 1530 aa15□□□□□ -0.01
MSL3-201ENST00000312196 GRIN2AQ12879 1464 aa14.99□□□□□ -0.01
MSL3-201ENST00000312196 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
MSL3-201ENST00000312196 FHAD1B1AJZ9 1412 aa14.98□□□□□ -0.01
MSL3-201ENST00000312196 SHROOM2Q13796 1616 aa14.97□□□□□ -0.01
MSL3-201ENST00000312196 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
MSL3-201ENST00000312196 CEP170Q5SW79 1584 aa14.89□□□□□ -0.03
MSL3-201ENST00000312196 CUL7Q14999 1698 aa14.81□□□□□ -0.04
MSL3-201ENST00000312196 ERCC6L2Q5T890 1561 aa14.78□□□□□ -0.04
MSL3-201ENST00000312196 KIF27Q86VH2 1401 aa14.78□□□□□ -0.04
MSL3-201ENST00000312196 RUSC2Q8N2Y8 1516 aa14.75□□□□□ -0.05
MSL3-201ENST00000312196 MAPKBP1O60336 1514 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms