RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 NISCHQ9Y2I1 1504 aa26.47■■□□□ 1.83
CSPG4P1Y-201ENST00000306641 CCDC180Q9P1Z9 1646 aa23.6■■□□□ 1.37
CSPG4P1Y-201ENST00000306641 ABCC9O60706 1549 aa22.87■■□□□ 1.25
CSPG4P1Y-201ENST00000306641 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
CSPG4P1Y-201ENST00000306641 NACADO15069 1562 aa22.1■■□□□ 1.13
CSPG4P1Y-201ENST00000306641 ZCCHC6Q5VYS8 1495 aaKnown RBP22.09■■□□□ 1.13
CSPG4P1Y-201ENST00000306641 DCAF8L2P0C7V8 631 aa22.04■■□□□ 1.12
CSPG4P1Y-201ENST00000306641 MYO15BQ96JP2 1530 aa21.96■■□□□ 1.11
CSPG4P1Y-201ENST00000306641 DCAF1Q9Y4B6 1507 aa21.92■■□□□ 1.1
CSPG4P1Y-201ENST00000306641 UNC13AQ9UPW8 1703 aa21.69■■□□□ 1.06
CSPG4P1Y-201ENST00000306641 SCRIBQ14160 1630 aa21.51■■□□□ 1.03
CSPG4P1Y-201ENST00000306641 BICRAQ9NZM4 1560 aa21.37■■□□□ 1.01
CSPG4P1Y-201ENST00000306641 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
CSPG4P1Y-201ENST00000306641 SHROOM4Q9ULL8 1493 aa21.22■□□□□ 0.99
CSPG4P1Y-201ENST00000306641 EIF4G1Q04637 1599 aaKnown RBP20.84■□□□□ 0.93
CSPG4P1Y-201ENST00000306641 CC2D2AQ9P2K1 1620 aa20.73■□□□□ 0.91
CSPG4P1Y-201ENST00000306641 DNAJC5BQ9UF47 199 aa20.72■□□□□ 0.91
CSPG4P1Y-201ENST00000306641 SMARCA4P51532 1647 aa20.57■□□□□ 0.88
CSPG4P1Y-201ENST00000306641 BAZ1AQ9NRL2 1556 aaPredicted RBP20.56■□□□□ 0.88
CSPG4P1Y-201ENST00000306641 CECR2Q9BXF3 1484 aa20.56■□□□□ 0.88
CSPG4P1Y-201ENST00000306641 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
CSPG4P1Y-201ENST00000306641 MROH2BQ7Z745 1585 aa20.38■□□□□ 0.85
CSPG4P1Y-201ENST00000306641 ATAD2BQ9ULI0 1458 aa20.36■□□□□ 0.85
CSPG4P1Y-201ENST00000306641 PEG3Q9GZU2 1588 aa20.34■□□□□ 0.85
CSPG4P1Y-201ENST00000306641 HMGXB3Q12766 1538 aa20.31■□□□□ 0.84
CSPG4P1Y-201ENST00000306641 NCAPD3P42695 1498 aa20.3■□□□□ 0.84
CSPG4P1Y-201ENST00000306641 BAZ1BQ9UIG0 1483 aaKnown RBP20.25■□□□□ 0.83
CSPG4P1Y-201ENST00000306641 WIZO95785 1651 aa20.24■□□□□ 0.83
CSPG4P1Y-201ENST00000306641 RSF1Q96T23 1441 aaPredicted RBP20.17■□□□□ 0.82
CSPG4P1Y-201ENST00000306641 TOP2AP11388 1531 aaKnown RBP20.03■□□□□ 0.8
CSPG4P1Y-201ENST00000306641 LAMC3Q9Y6N6 1575 aa19.85■□□□□ 0.77
CSPG4P1Y-201ENST00000306641 NESP48681 1621 aa19.8■□□□□ 0.76
CSPG4P1Y-201ENST00000306641 ERCC6Q03468 1493 aa19.76■□□□□ 0.75
CSPG4P1Y-201ENST00000306641 SUPT5HO00267 1087 aaKnown RBP19.76■□□□□ 0.75
CSPG4P1Y-201ENST00000306641 PRDM2Q13029 1718 aa19.73■□□□□ 0.75
CSPG4P1Y-201ENST00000306641 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
CSPG4P1Y-201ENST00000306641 CCDC88BA6NC98 1476 aa19.72■□□□□ 0.75
CSPG4P1Y-201ENST00000306641 KIF21AQ7Z4S6 1674 aa19.7■□□□□ 0.74
CSPG4P1Y-201ENST00000306641 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
CSPG4P1Y-201ENST00000306641 CFTRP13569 1480 aa19.65■□□□□ 0.74
CSPG4P1Y-201ENST00000306641 THOC2Q8NI27 1593 aaKnown RBP19.56■□□□□ 0.72
CSPG4P1Y-201ENST00000306641 FANCD2Q9BXW9 1451 aa19.54■□□□□ 0.72
CSPG4P1Y-201ENST00000306641 CEP164Q9UPV0 1460 aa19.54■□□□□ 0.72
CSPG4P1Y-201ENST00000306641 CUX2O14529 1486 aa19.48■□□□□ 0.71
CSPG4P1Y-201ENST00000306641 MRC2Q9UBG0 1479 aa19.48■□□□□ 0.71
CSPG4P1Y-201ENST00000306641 WDR62O43379 1518 aa19.41■□□□□ 0.7
CSPG4P1Y-201ENST00000306641 URB2Q14146 1524 aaKnown RBP19.32■□□□□ 0.68
CSPG4P1Y-201ENST00000306641 DNMBPQ6XZF7 1577 aa19.28■□□□□ 0.68
CSPG4P1Y-201ENST00000306641 ABCC8Q09428 1581 aa19.27■□□□□ 0.68
CSPG4P1Y-201ENST00000306641 TOPBP1Q92547 1522 aa19.25■□□□□ 0.67
CSPG4P1Y-201ENST00000306641 CUX1P39880 1505 aa19.14■□□□□ 0.65
CSPG4P1Y-201ENST00000306641 IFT140Q96RY7 1462 aa19.1■□□□□ 0.65
CSPG4P1Y-201ENST00000306641 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
CSPG4P1Y-201ENST00000306641 BIVM-ERCC5R4GMW8 1640 aa19.08■□□□□ 0.65
CSPG4P1Y-201ENST00000306641 FGD5Q6ZNL6 1462 aa19.07■□□□□ 0.64
CSPG4P1Y-201ENST00000306641 WRNQ14191 1432 aaPredicted RBP eCLIP19.06■□□□□ 0.64
CSPG4P1Y-201ENST00000306641 TOP2BQ02880 1626 aa19.05■□□□□ 0.64
CSPG4P1Y-201ENST00000306641 TARBP1Q13395 1621 aaKnown RBP19.04■□□□□ 0.64
CSPG4P1Y-201ENST00000306641 SYNJ1O43426 1573 aa19.03■□□□□ 0.64
CSPG4P1Y-201ENST00000306641 EIF4G3O43432 1585 aaKnown RBP19■□□□□ 0.63
CSPG4P1Y-201ENST00000306641 WDR97A6NE52 1622 aa18.99■□□□□ 0.63
CSPG4P1Y-201ENST00000306641 SOGA1O94964 1423 aa18.99■□□□□ 0.63
CSPG4P1Y-201ENST00000306641 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
CSPG4P1Y-201ENST00000306641 ZNF608Q9ULD9 1512 aaPredicted RBP18.96■□□□□ 0.63
CSPG4P1Y-201ENST00000306641 PBRM1Q86U86 1689 aa18.89■□□□□ 0.61
CSPG4P1Y-201ENST00000306641 ABCA10Q8WWZ4 1543 aa18.88■□□□□ 0.61
CSPG4P1Y-201ENST00000306641 AQRO60306 1485 aaKnown RBP eCLIP18.86■□□□□ 0.61
CSPG4P1Y-201ENST00000306641 ABCA5Q8WWZ7 1642 aa18.85■□□□□ 0.61
CSPG4P1Y-201ENST00000306641 TDRD9Q8NDG6 1382 aaKnown RBP18.83■□□□□ 0.61
CSPG4P1Y-201ENST00000306641 GAPVD1Q14C86 1478 aa18.8■□□□□ 0.6
CSPG4P1Y-201ENST00000306641 GRIN2BQ13224 1484 aa18.78■□□□□ 0.6
CSPG4P1Y-201ENST00000306641 CHD1O14646 1710 aa18.78■□□□□ 0.6
CSPG4P1Y-201ENST00000306641 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
CSPG4P1Y-201ENST00000306641 MAGI1Q96QZ7 1491 aaPredicted RBP18.74■□□□□ 0.59
CSPG4P1Y-201ENST00000306641 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
CSPG4P1Y-201ENST00000306641 ADAMTS12P58397 1594 aa18.67■□□□□ 0.58
CSPG4P1Y-201ENST00000306641 KIF27Q86VH2 1401 aa18.66■□□□□ 0.58
CSPG4P1Y-201ENST00000306641 TRIM41Q8WV44 630 aa18.66■□□□□ 0.58
CSPG4P1Y-201ENST00000306641 SYNJ2O15056 1496 aa18.65■□□□□ 0.58
CSPG4P1Y-201ENST00000306641 FBLN2P98095 1184 aa18.64■□□□□ 0.57
CSPG4P1Y-201ENST00000306641 OSCARQ8IYS5 282 aa18.63■□□□□ 0.57
CSPG4P1Y-201ENST00000306641 DNAJC5Q9H3Z4 198 aa18.62■□□□□ 0.57
CSPG4P1Y-201ENST00000306641 CUL7Q14999 1698 aa18.61■□□□□ 0.57
CSPG4P1Y-201ENST00000306641 CHMP7Q8WUX9 453 aaPredicted RBP18.6■□□□□ 0.57
CSPG4P1Y-201ENST00000306641 FHAD1B1AJZ9 1412 aa18.58■□□□□ 0.57
CSPG4P1Y-201ENST00000306641 GRIN2AQ12879 1464 aa18.55■□□□□ 0.56
CSPG4P1Y-201ENST00000306641 IGF1RP08069 1367 aa18.48■□□□□ 0.55
CSPG4P1Y-201ENST00000306641 CLASP1Q7Z460 1538 aa18.48■□□□□ 0.55
CSPG4P1Y-201ENST00000306641 CEP170Q5SW79 1584 aa18.47■□□□□ 0.55
CSPG4P1Y-201ENST00000306641 RUSC2Q8N2Y8 1516 aa18.46■□□□□ 0.55
CSPG4P1Y-201ENST00000306641 CHIC1Q5VXU3 224 aa18.46■□□□□ 0.55
CSPG4P1Y-201ENST00000306641 CARMIL1Q5VZK9 1371 aa18.43■□□□□ 0.54
CSPG4P1Y-201ENST00000306641 NUP160Q12769 1436 aa18.43■□□□□ 0.54
CSPG4P1Y-201ENST00000306641 RIMBP3CA6NJZ7 1639 aa18.41■□□□□ 0.54
CSPG4P1Y-201ENST00000306641 RIMBP3BA6NNM3 1639 aa18.41■□□□□ 0.54
CSPG4P1Y-201ENST00000306641 RIMBP3Q9UFD9 1639 aa18.41■□□□□ 0.54
CSPG4P1Y-201ENST00000306641 EEA1Q15075 1411 aa18.4■□□□□ 0.54
CSPG4P1Y-201ENST00000306641 ARHGEF11O15085 1522 aa18.39■□□□□ 0.53
CSPG4P1Y-201ENST00000306641 RAPGEF2Q9Y4G8 1499 aa18.38■□□□□ 0.53
CSPG4P1Y-201ENST00000306641 SHROOM2Q13796 1616 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms