RNA–Protein interactions for RNA: ENST00000306256.13

RER1-201, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

TSL 5

Gene RER1, Length 695 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-201ENST00000306256 NISCHQ9Y2I1 1504 aa51.3■■■■■ 5.8
RER1-201ENST00000306256 CCDC180Q9P1Z9 1646 aa46.02■■■■■ 4.96
RER1-201ENST00000306256 ABCC9O60706 1549 aa45.87■■■■■ 4.93
RER1-201ENST00000306256 RB1CC1Q8TDY2 1594 aa43.7■■■■■ 4.59
RER1-201ENST00000306256 NACADO15069 1562 aa43.41■■■■■ 4.54
RER1-201ENST00000306256 DCAF8L2P0C7V8 631 aa43.23■■■■■ 4.51
RER1-201ENST00000306256 DNAJC5BQ9UF47 199 aa42.87■■■■■ 4.45
RER1-201ENST00000306256 UNC13AQ9UPW8 1703 aa42.86■■■■■ 4.45
RER1-201ENST00000306256 MYO15BQ96JP2 1530 aa42.81■■■■■ 4.44
RER1-201ENST00000306256 PABPN1Q86U42 306 aaKnown RBP eCLIP42.71■■■■■ 4.43
RER1-201ENST00000306256 ZCCHC6Q5VYS8 1495 aaKnown RBP42.56■■■■■ 4.4
RER1-201ENST00000306256 BICRAQ9NZM4 1560 aa42.46■■■■■ 4.39
RER1-201ENST00000306256 DCAF1Q9Y4B6 1507 aa42.34■■■■■ 4.37
RER1-201ENST00000306256 SCRIBQ14160 1630 aa41.98■■■■■ 4.31
RER1-201ENST00000306256 SHROOM4Q9ULL8 1493 aa41.79■■■■■ 4.28
RER1-201ENST00000306256 CC2D2AQ9P2K1 1620 aa41.46■■■■■ 4.23
RER1-201ENST00000306256 EIF4G1Q04637 1599 aaKnown RBP41.38■■■■■ 4.22
RER1-201ENST00000306256 CECR2Q9BXF3 1484 aa41.28■■■■■ 4.2
RER1-201ENST00000306256 NCAPD3P42695 1498 aa40.05■■■■■ 4
RER1-201ENST00000306256 SMARCA4P51532 1647 aa40.04■■■■■ 4
RER1-201ENST00000306256 ATAD2BQ9ULI0 1458 aa39.99■■■■□ 3.99
RER1-201ENST00000306256 SMARCA2P51531 1590 aa39.89■■■■□ 3.98
RER1-201ENST00000306256 BAZ1AQ9NRL2 1556 aaPredicted RBP39.81■■■■□ 3.96
RER1-201ENST00000306256 HMGXB3Q12766 1538 aa39.81■■■■□ 3.96
RER1-201ENST00000306256 BAZ1BQ9UIG0 1483 aaKnown RBP39.62■■■■□ 3.93
RER1-201ENST00000306256 PEG3Q9GZU2 1588 aa39.59■■■■□ 3.93
RER1-201ENST00000306256 ERCC6Q03468 1493 aa39.57■■■■□ 3.93
RER1-201ENST00000306256 MROH2BQ7Z745 1585 aa39.56■■■■□ 3.92
RER1-201ENST00000306256 NESP48681 1621 aa39.47■■■■□ 3.91
RER1-201ENST00000306256 CUX2O14529 1486 aa39.42■■■■□ 3.9
RER1-201ENST00000306256 DNAJC5Q9H3Z4 198 aa39.2■■■■□ 3.87
RER1-201ENST00000306256 LAMC3Q9Y6N6 1575 aa39.16■■■■□ 3.86
RER1-201ENST00000306256 WIZO95785 1651 aa39.15■■■■□ 3.86
RER1-201ENST00000306256 THOC2Q8NI27 1593 aaKnown RBP39.05■■■■□ 3.84
RER1-201ENST00000306256 KIF21AQ7Z4S6 1674 aa39.03■■■■□ 3.84
RER1-201ENST00000306256 PDS5BQ9NTI5 1447 aa38.89■■■■□ 3.82
RER1-201ENST00000306256 CADPSQ9ULU8 1353 aa38.84■■■■□ 3.81
RER1-201ENST00000306256 RSF1Q96T23 1441 aaPredicted RBP38.76■■■■□ 3.8
RER1-201ENST00000306256 TOP2AP11388 1531 aaKnown RBP38.61■■■■□ 3.77
RER1-201ENST00000306256 MRC2Q9UBG0 1479 aa38.6■■■■□ 3.77
RER1-201ENST00000306256 WDR62O43379 1518 aa38.51■■■■□ 3.76
RER1-201ENST00000306256 CEP164Q9UPV0 1460 aa38.47■■■■□ 3.75
RER1-201ENST00000306256 FANCD2Q9BXW9 1451 aa38.45■■■■□ 3.75
RER1-201ENST00000306256 CFTRP13569 1480 aa38.44■■■■□ 3.74
RER1-201ENST00000306256 PRDM2Q13029 1718 aa38.22■■■■□ 3.71
RER1-201ENST00000306256 URB2Q14146 1524 aaKnown RBP38.15■■■■□ 3.7
RER1-201ENST00000306256 CCDC88BA6NC98 1476 aa38.15■■■■□ 3.7
RER1-201ENST00000306256 TOPBP1Q92547 1522 aa37.75■■■■□ 3.63
RER1-201ENST00000306256 IFT140Q96RY7 1462 aa37.67■■■■□ 3.62
RER1-201ENST00000306256 ZNF608Q9ULD9 1512 aaPredicted RBP37.66■■■■□ 3.62
RER1-201ENST00000306256 DNMBPQ6XZF7 1577 aa37.63■■■■□ 3.61
RER1-201ENST00000306256 OSCARQ8IYS5 282 aa37.61■■■■□ 3.61
RER1-201ENST00000306256 TRIM41Q8WV44 630 aa37.61■■■■□ 3.61
RER1-201ENST00000306256 ABCC8Q09428 1581 aa37.6■■■■□ 3.61
RER1-201ENST00000306256 EIF4G3O43432 1585 aaKnown RBP37.48■■■■□ 3.59
RER1-201ENST00000306256 TARBP1Q13395 1621 aaKnown RBP37.42■■■■□ 3.58
RER1-201ENST00000306256 POLA1P09884 1462 aaPredicted RBP37.37■■■■□ 3.57
RER1-201ENST00000306256 AQRO60306 1485 aaKnown RBP eCLIP37.31■■■■□ 3.562e-6■■■□□ 15.2
RER1-201ENST00000306256 RAD54L2Q9Y4B4 1467 aa37.25■■■■□ 3.55
RER1-201ENST00000306256 CHD1O14646 1710 aa37.24■■■■□ 3.55
RER1-201ENST00000306256 RIMBP3CA6NJZ7 1639 aa37.22■■■■□ 3.55
RER1-201ENST00000306256 RIMBP3BA6NNM3 1639 aa37.22■■■■□ 3.55
RER1-201ENST00000306256 RIMBP3Q9UFD9 1639 aa37.22■■■■□ 3.55
RER1-201ENST00000306256 SUPT5HO00267 1087 aaKnown RBP37.18■■■■□ 3.54
RER1-201ENST00000306256 CUX1P39880 1505 aa37.17■■■■□ 3.54
RER1-201ENST00000306256 FGD5Q6ZNL6 1462 aa37.17■■■■□ 3.54
RER1-201ENST00000306256 SOGA1O94964 1423 aa37.16■■■■□ 3.54
RER1-201ENST00000306256 TDRD9Q8NDG6 1382 aaKnown RBP37.1■■■■□ 3.53
RER1-201ENST00000306256 ARHGEF11O15085 1522 aa37.09■■■■□ 3.53
RER1-201ENST00000306256 FBLN2P98095 1184 aa37.02■■■■□ 3.52
RER1-201ENST00000306256 WDR97A6NE52 1622 aa36.99■■■■□ 3.51
RER1-201ENST00000306256 SNAPC4Q5SXM2 1469 aa36.95■■■■□ 3.51
RER1-201ENST00000306256 GRIN2BQ13224 1484 aa36.83■■■■□ 3.49
RER1-201ENST00000306256 MAGI1Q96QZ7 1491 aaPredicted RBP36.82■■■■□ 3.49
RER1-201ENST00000306256 PBRM1Q86U86 1689 aa36.82■■■■□ 3.48
RER1-201ENST00000306256 CYB5RLQ6IPT4 315 aa36.76■■■■□ 3.48
RER1-201ENST00000306256 CHMP7Q8WUX9 453 aaPredicted RBP36.74■■■■□ 3.47
RER1-201ENST00000306256 GAPVD1Q14C86 1478 aa36.74■■■■□ 3.47
RER1-201ENST00000306256 ARAP1Q96P48 1450 aa36.74■■■■□ 3.47
RER1-201ENST00000306256 CLASP1Q7Z460 1538 aa36.72■■■■□ 3.47
RER1-201ENST00000306256 ABCA10Q8WWZ4 1543 aa36.72■■■■□ 3.47
RER1-201ENST00000306256 ABCA5Q8WWZ7 1642 aa36.7■■■■□ 3.47
RER1-201ENST00000306256 SYNJ1O43426 1573 aa36.7■■■■□ 3.47
RER1-201ENST00000306256 SYNJ2O15056 1496 aa36.7■■■■□ 3.47
RER1-201ENST00000306256 BIVM-ERCC5R4GMW8 1640 aa36.63■■■■□ 3.45
RER1-201ENST00000306256 TOP2BQ02880 1626 aa36.6■■■■□ 3.45
RER1-201ENST00000306256 WRNQ14191 1432 aaPredicted RBP eCLIP36.58■■■■□ 3.454e-8■■■■■ 27.9
RER1-201ENST00000306256 ADAMTS12P58397 1594 aa36.43■■■■□ 3.42
RER1-201ENST00000306256 GRIN2AQ12879 1464 aa36.38■■■■□ 3.41
RER1-201ENST00000306256 TRHP20396 242 aaPredicted RBP36.31■■■■□ 3.4
RER1-201ENST00000306256 CEP170Q5SW79 1584 aa36.28■■■■□ 3.4
RER1-201ENST00000306256 ERICH3Q5RHP9 1530 aa36.26■■■■□ 3.4
RER1-201ENST00000306256 FHAD1B1AJZ9 1412 aa36.25■■■■□ 3.39
RER1-201ENST00000306256 NUP160Q12769 1436 aa36.24■■■■□ 3.39
RER1-201ENST00000306256 ERCC6L2Q5T890 1561 aa36.21■■■■□ 3.39
RER1-201ENST00000306256 SHROOM2Q13796 1616 aa36.11■■■■□ 3.37
RER1-201ENST00000306256 RUSC2Q8N2Y8 1516 aa35.91■■■■□ 3.34
RER1-201ENST00000306256 PRG4Q92954 1404 aaPredicted RBP35.89■■■■□ 3.34
RER1-201ENST00000306256 KIF27Q86VH2 1401 aa35.84■■■■□ 3.33
RER1-201ENST00000306256 JPH4Q96JJ6 628 aa35.83■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms