RNA–Protein interactions for RNA: ENST00000299259.10

COPS2-201, Transcript of COP9 signalosome subunit 2, humanhuman

TSL 1 (best) BASIC

Gene COPS2, Length 2,036 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS2-201ENST00000299259 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
COPS2-201ENST00000299259 CCDC180Q9P1Z9 1646 aa20.83■□□□□ 0.92
COPS2-201ENST00000299259 ZCCHC6Q5VYS8 1495 aaKnown RBP20.03■□□□□ 0.8
COPS2-201ENST00000299259 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
COPS2-201ENST00000299259 ABCC9O60706 1549 aa19.53■□□□□ 0.72
COPS2-201ENST00000299259 DCAF8L2P0C7V8 631 aa19.51■□□□□ 0.71
COPS2-201ENST00000299259 MYO15BQ96JP2 1530 aa19.43■□□□□ 0.7
COPS2-201ENST00000299259 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
COPS2-201ENST00000299259 NACADO15069 1562 aa19.31■□□□□ 0.68
COPS2-201ENST00000299259 RB1CC1Q8TDY2 1594 aa19.15■□□□□ 0.66
COPS2-201ENST00000299259 SCRIBQ14160 1630 aa19.12■□□□□ 0.65
COPS2-201ENST00000299259 UNC13AQ9UPW8 1703 aa18.86■□□□□ 0.61
COPS2-201ENST00000299259 SUPT5HO00267 1087 aaKnown RBP18.65■□□□□ 0.58
COPS2-201ENST00000299259 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
COPS2-201ENST00000299259 CECR2Q9BXF3 1484 aa18.45■□□□□ 0.54
COPS2-201ENST00000299259 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
COPS2-201ENST00000299259 BAZ1AQ9NRL2 1556 aaPredicted RBP18.4■□□□□ 0.54
COPS2-201ENST00000299259 MROH2BQ7Z745 1585 aa18.38■□□□□ 0.53
COPS2-201ENST00000299259 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
COPS2-201ENST00000299259 SMARCA4P51532 1647 aa18.33■□□□□ 0.53
COPS2-201ENST00000299259 WIZO95785 1651 aa18.28■□□□□ 0.52
COPS2-201ENST00000299259 PEG3Q9GZU2 1588 aa18.09■□□□□ 0.49
COPS2-201ENST00000299259 TOP2AP11388 1531 aaKnown RBP18.09■□□□□ 0.49
COPS2-201ENST00000299259 EIF4G1Q04637 1599 aaKnown RBP18■□□□□ 0.47
COPS2-201ENST00000299259 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
COPS2-201ENST00000299259 ATAD2BQ9ULI0 1458 aa17.94■□□□□ 0.46
COPS2-201ENST00000299259 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
COPS2-201ENST00000299259 CHIC1Q5VXU3 224 aa17.88■□□□□ 0.45
COPS2-201ENST00000299259 CCDC88BA6NC98 1476 aa17.84■□□□□ 0.45
COPS2-201ENST00000299259 HMGXB3Q12766 1538 aa17.82■□□□□ 0.44
COPS2-201ENST00000299259 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
COPS2-201ENST00000299259 CC2D2AQ9P2K1 1620 aa17.73■□□□□ 0.43
COPS2-201ENST00000299259 ABCC8Q09428 1581 aa17.54■□□□□ 0.4
COPS2-201ENST00000299259 TRIM41Q8WV44 630 aa17.54■□□□□ 0.4
COPS2-201ENST00000299259 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
COPS2-201ENST00000299259 CFTRP13569 1480 aa17.41■□□□□ 0.38
COPS2-201ENST00000299259 WRNQ14191 1432 aaPredicted RBP eCLIP17.38■□□□□ 0.37
COPS2-201ENST00000299259 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
COPS2-201ENST00000299259 BIVM-ERCC5R4GMW8 1640 aa17.3■□□□□ 0.36
COPS2-201ENST00000299259 CADPSQ9ULU8 1353 aa17.29■□□□□ 0.36
COPS2-201ENST00000299259 TOP2BQ02880 1626 aa17.29■□□□□ 0.36
COPS2-201ENST00000299259 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
COPS2-201ENST00000299259 FAM9AQ8IZU1 332 aaPredicted RBP17.21■□□□□ 0.35
COPS2-201ENST00000299259 CUX1P39880 1505 aa17.2■□□□□ 0.34
COPS2-201ENST00000299259 EEA1Q15075 1411 aa17.17■□□□□ 0.34
COPS2-201ENST00000299259 LOC105371045A0A1W2PR82 267 aa17.17■□□□□ 0.34
COPS2-201ENST00000299259 NESP48681 1621 aa17.17■□□□□ 0.34
COPS2-201ENST00000299259 FANCD2Q9BXW9 1451 aa17.16■□□□□ 0.34
COPS2-201ENST00000299259 SOGA1O94964 1423 aa17.15■□□□□ 0.34
COPS2-201ENST00000299259 DNAJC5BQ9UF47 199 aa17.11■□□□□ 0.33
COPS2-201ENST00000299259 RUSC2Q8N2Y8 1516 aa17.09■□□□□ 0.33
COPS2-201ENST00000299259 CEP164Q9UPV0 1460 aa17.07■□□□□ 0.32
COPS2-201ENST00000299259 KIF21AQ7Z4S6 1674 aa17.07■□□□□ 0.32
COPS2-201ENST00000299259 DNMBPQ6XZF7 1577 aa17.06■□□□□ 0.32
COPS2-201ENST00000299259 PDS5BQ9NTI5 1447 aa17.02■□□□□ 0.32
COPS2-201ENST00000299259 KIF21BO75037 1637 aa17.01■□□□□ 0.31
COPS2-201ENST00000299259 FGD5Q6ZNL6 1462 aa17■□□□□ 0.31
COPS2-201ENST00000299259 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
COPS2-201ENST00000299259 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
COPS2-201ENST00000299259 EHMT2Q96KQ7 1210 aa16.97■□□□□ 0.31
COPS2-201ENST00000299259 GOLGA3Q08378 1498 aa16.95■□□□□ 0.3
COPS2-201ENST00000299259 URB2Q14146 1524 aaKnown RBP16.95■□□□□ 0.3
COPS2-201ENST00000299259 KIF27Q86VH2 1401 aa16.93■□□□□ 0.3
COPS2-201ENST00000299259 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
COPS2-201ENST00000299259 WDR97A6NE52 1622 aa16.89■□□□□ 0.29
COPS2-201ENST00000299259 CUX2O14529 1486 aa16.88■□□□□ 0.29
COPS2-201ENST00000299259 ERICH3Q5RHP9 1530 aa16.87■□□□□ 0.29
COPS2-201ENST00000299259 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
COPS2-201ENST00000299259 ABCA10Q8WWZ4 1543 aa16.85■□□□□ 0.29
COPS2-201ENST00000299259 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
COPS2-201ENST00000299259 RAPGEF2Q9Y4G8 1499 aa16.83■□□□□ 0.29
COPS2-201ENST00000299259 PRXQ9BXM0 1461 aa16.83■□□□□ 0.28
COPS2-201ENST00000299259 RAD54L2Q9Y4B4 1467 aa16.82■□□□□ 0.28
COPS2-201ENST00000299259 CEP162Q5TB80 1403 aa16.81■□□□□ 0.28
COPS2-201ENST00000299259 UBTFP17480 764 aaKnown RBP16.79■□□□□ 0.28
COPS2-201ENST00000299259 WDR62O43379 1518 aa16.78■□□□□ 0.28
COPS2-201ENST00000299259 ABCA5Q8WWZ7 1642 aa16.77■□□□□ 0.27
COPS2-201ENST00000299259 TARBP1Q13395 1621 aaKnown RBP16.76■□□□□ 0.27
COPS2-201ENST00000299259 ERCC6Q03468 1493 aa16.76■□□□□ 0.27
COPS2-201ENST00000299259 THOC2Q8NI27 1593 aaKnown RBP16.74■□□□□ 0.27
COPS2-201ENST00000299259 CUL7Q14999 1698 aa16.74■□□□□ 0.27
COPS2-201ENST00000299259 IGF1RP08069 1367 aa16.72■□□□□ 0.27
COPS2-201ENST00000299259 PBRM1Q86U86 1689 aa16.68■□□□□ 0.26
COPS2-201ENST00000299259 CLIP1P30622 1438 aa16.66■□□□□ 0.26
COPS2-201ENST00000299259 CARMIL1Q5VZK9 1371 aa16.66■□□□□ 0.26
COPS2-201ENST00000299259 GAPVD1Q14C86 1478 aa16.65■□□□□ 0.26
COPS2-201ENST00000299259 IFT140Q96RY7 1462 aa16.63■□□□□ 0.25
COPS2-201ENST00000299259 TDRD9Q8NDG6 1382 aaKnown RBP16.62■□□□□ 0.25
COPS2-201ENST00000299259 CTTNBP2Q8WZ74 1663 aa16.61■□□□□ 0.25
COPS2-201ENST00000299259 EIF4G3O43432 1585 aaKnown RBP16.56■□□□□ 0.24
COPS2-201ENST00000299259 ADAMTS12P58397 1594 aa16.54■□□□□ 0.24
COPS2-201ENST00000299259 ZNF608Q9ULD9 1512 aaPredicted RBP16.53■□□□□ 0.24
COPS2-201ENST00000299259 VPS8Q8N3P4 1428 aa16.53■□□□□ 0.24
COPS2-201ENST00000299259 AQRO60306 1485 aaKnown RBP eCLIP16.52■□□□□ 0.233e-7■■■■□ 23.7
COPS2-201ENST00000299259 GRIN2BQ13224 1484 aa16.52■□□□□ 0.23
COPS2-201ENST00000299259 ARAP1Q96P48 1450 aa16.51■□□□□ 0.23
COPS2-201ENST00000299259 RANGAP1P46060 587 aaPredicted RBP16.5■□□□□ 0.23
COPS2-201ENST00000299259 ARHGAP35Q9NRY4 1499 aa16.48■□□□□ 0.23
COPS2-201ENST00000299259 FHAD1B1AJZ9 1412 aa16.47■□□□□ 0.23
COPS2-201ENST00000299259 TRIM26Q12899 539 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms