RNA–Protein interactions for RNA: ENST00000297265.4

CHMP4C-201, Transcript of charged multivesicular body protein 4C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4C, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4C-201ENST00000297265 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
CHMP4C-201ENST00000297265 CCDC180Q9P1Z9 1646 aa26.23■■□□□ 1.79
CHMP4C-201ENST00000297265 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
CHMP4C-201ENST00000297265 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
CHMP4C-201ENST00000297265 SHROOM4Q9ULL8 1493 aa24.98■■□□□ 1.59
CHMP4C-201ENST00000297265 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
CHMP4C-201ENST00000297265 ABCC9O60706 1549 aa24.66■■□□□ 1.54
CHMP4C-201ENST00000297265 MYO15BQ96JP2 1530 aa24.63■■□□□ 1.53
CHMP4C-201ENST00000297265 NACADO15069 1562 aa24.39■■□□□ 1.49
CHMP4C-201ENST00000297265 SCRIBQ14160 1630 aa24.23■■□□□ 1.47
CHMP4C-201ENST00000297265 SUPT5HO00267 1087 aaKnown RBP24.15■■□□□ 1.46
CHMP4C-201ENST00000297265 RB1CC1Q8TDY2 1594 aa24.09■■□□□ 1.45
CHMP4C-201ENST00000297265 UNC13AQ9UPW8 1703 aa23.74■■□□□ 1.39
CHMP4C-201ENST00000297265 RSF1Q96T23 1441 aaPredicted RBP23.67■■□□□ 1.38
CHMP4C-201ENST00000297265 CECR2Q9BXF3 1484 aa23.62■■□□□ 1.37
CHMP4C-201ENST00000297265 BICRAQ9NZM4 1560 aa23.5■■□□□ 1.35
CHMP4C-201ENST00000297265 MROH2BQ7Z745 1585 aa23.49■■□□□ 1.35
CHMP4C-201ENST00000297265 PABPN1Q86U42 306 aaKnown RBP eCLIP23.36■■□□□ 1.33
CHMP4C-201ENST00000297265 BAZ1AQ9NRL2 1556 aaPredicted RBP23.34■■□□□ 1.33
CHMP4C-201ENST00000297265 WIZO95785 1651 aa23.31■■□□□ 1.32
CHMP4C-201ENST00000297265 CHIC1Q5VXU3 224 aa23.3■■□□□ 1.32
CHMP4C-201ENST00000297265 SMARCA4P51532 1647 aa23.24■■□□□ 1.31
CHMP4C-201ENST00000297265 TOP2AP11388 1531 aaKnown RBP22.99■■□□□ 1.27
CHMP4C-201ENST00000297265 PEG3Q9GZU2 1588 aa22.95■■□□□ 1.27
CHMP4C-201ENST00000297265 CCDC88BA6NC98 1476 aa22.84■■□□□ 1.25
CHMP4C-201ENST00000297265 SMARCA2P51531 1590 aa22.83■■□□□ 1.25
CHMP4C-201ENST00000297265 ATAD2BQ9ULI0 1458 aa22.81■■□□□ 1.24
CHMP4C-201ENST00000297265 EIF4G1Q04637 1599 aaKnown RBP22.79■■□□□ 1.24
CHMP4C-201ENST00000297265 TRIM41Q8WV44 630 aa22.64■■□□□ 1.22
CHMP4C-201ENST00000297265 BAZ1BQ9UIG0 1483 aaKnown RBP22.64■■□□□ 1.22
CHMP4C-201ENST00000297265 NCAPD3P42695 1498 aa22.57■■□□□ 1.2
CHMP4C-201ENST00000297265 HMGXB3Q12766 1538 aa22.51■■□□□ 1.19
CHMP4C-201ENST00000297265 LOC105371045A0A1W2PR82 267 aa22.47■■□□□ 1.19
CHMP4C-201ENST00000297265 ABCC8Q09428 1581 aa22.45■■□□□ 1.19
CHMP4C-201ENST00000297265 CC2D2AQ9P2K1 1620 aa22.31■■□□□ 1.16
CHMP4C-201ENST00000297265 FAM9AQ8IZU1 332 aaPredicted RBP22.28■■□□□ 1.16
CHMP4C-201ENST00000297265 WRNQ14191 1432 aaPredicted RBP eCLIP22.21■■□□□ 1.15
CHMP4C-201ENST00000297265 SYNJ1O43426 1573 aa22.16■■□□□ 1.14
CHMP4C-201ENST00000297265 CFTRP13569 1480 aa22.15■■□□□ 1.14
CHMP4C-201ENST00000297265 SOGA1O94964 1423 aa22.11■■□□□ 1.13
CHMP4C-201ENST00000297265 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
CHMP4C-201ENST00000297265 TOP2BQ02880 1626 aa22.01■■□□□ 1.11
CHMP4C-201ENST00000297265 CADPSQ9ULU8 1353 aa22.01■■□□□ 1.11
CHMP4C-201ENST00000297265 EHMT2Q96KQ7 1210 aa21.98■■□□□ 1.11
CHMP4C-201ENST00000297265 PRDM2Q13029 1718 aa21.97■■□□□ 1.11
CHMP4C-201ENST00000297265 BIVM-ERCC5R4GMW8 1640 aa21.97■■□□□ 1.11
CHMP4C-201ENST00000297265 EEA1Q15075 1411 aa21.97■■□□□ 1.11
CHMP4C-201ENST00000297265 CUX1P39880 1505 aa21.92■■□□□ 1.1
CHMP4C-201ENST00000297265 CSRNP3Q8WYN3 585 aa21.92■■□□□ 1.1
CHMP4C-201ENST00000297265 DNAJC5BQ9UF47 199 aa21.88■■□□□ 1.09
CHMP4C-201ENST00000297265 NESP48681 1621 aa21.79■■□□□ 1.08
CHMP4C-201ENST00000297265 FANCD2Q9BXW9 1451 aa21.74■■□□□ 1.07
CHMP4C-201ENST00000297265 TNIKQ9UKE5 1360 aa21.73■■□□□ 1.07
CHMP4C-201ENST00000297265 KIF21BO75037 1637 aa21.72■■□□□ 1.07
CHMP4C-201ENST00000297265 GOLGA3Q08378 1498 aa21.71■■□□□ 1.07
CHMP4C-201ENST00000297265 LAMC3Q9Y6N6 1575 aa21.7■■□□□ 1.06
CHMP4C-201ENST00000297265 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
CHMP4C-201ENST00000297265 PCGF6Q9BYE7 350 aa21.65■■□□□ 1.06
CHMP4C-201ENST00000297265 CEP162Q5TB80 1403 aa21.64■■□□□ 1.05
CHMP4C-201ENST00000297265 UBTFP17480 764 aaKnown RBP21.62■■□□□ 1.05
CHMP4C-201ENST00000297265 RAPGEF2Q9Y4G8 1499 aa21.62■■□□□ 1.05
CHMP4C-201ENST00000297265 FGD5Q6ZNL6 1462 aa21.61■■□□□ 1.05
CHMP4C-201ENST00000297265 KIF27Q86VH2 1401 aa21.59■■□□□ 1.05
CHMP4C-201ENST00000297265 PRXQ9BXM0 1461 aa21.59■■□□□ 1.05
CHMP4C-201ENST00000297265 DNMBPQ6XZF7 1577 aa21.57■■□□□ 1.04
CHMP4C-201ENST00000297265 TOPBP1Q92547 1522 aa21.55■■□□□ 1.04
CHMP4C-201ENST00000297265 TRIM26Q12899 539 aaPredicted RBP21.54■■□□□ 1.04
CHMP4C-201ENST00000297265 PDS5BQ9NTI5 1447 aa21.51■■□□□ 1.03
CHMP4C-201ENST00000297265 ERICH3Q5RHP9 1530 aa21.51■■□□□ 1.03
CHMP4C-201ENST00000297265 CUX2O14529 1486 aa21.5■■□□□ 1.03
CHMP4C-201ENST00000297265 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
CHMP4C-201ENST00000297265 POLA1P09884 1462 aaPredicted RBP21.48■■□□□ 1.03
CHMP4C-201ENST00000297265 KIF21AQ7Z4S6 1674 aa21.47■■□□□ 1.03
CHMP4C-201ENST00000297265 IGF1RP08069 1367 aa21.47■■□□□ 1.03
CHMP4C-201ENST00000297265 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.02
CHMP4C-201ENST00000297265 ABCA10Q8WWZ4 1543 aa21.42■■□□□ 1.02
CHMP4C-201ENST00000297265 CLIP1P30622 1438 aa21.4■■□□□ 1.02
CHMP4C-201ENST00000297265 PPARGC1BQ86YN6 1023 aaKnown RBP21.37■■□□□ 1.01
CHMP4C-201ENST00000297265 WDR97A6NE52 1622 aa21.33■■□□□ 1.01
CHMP4C-201ENST00000297265 CARMIL1Q5VZK9 1371 aa21.32■■□□□ 1
CHMP4C-201ENST00000297265 VPS8Q8N3P4 1428 aa21.25■□□□□ 0.99
CHMP4C-201ENST00000297265 RANGAP1P46060 587 aaPredicted RBP21.24■□□□□ 0.99
CHMP4C-201ENST00000297265 TARBP1Q13395 1621 aaKnown RBP21.23■□□□□ 0.99
CHMP4C-201ENST00000297265 MRC2Q9UBG0 1479 aa21.23■□□□□ 0.99
CHMP4C-201ENST00000297265 HRCP23327 699 aa21.23■□□□□ 0.99
CHMP4C-201ENST00000297265 ABCA5Q8WWZ7 1642 aa21.22■□□□□ 0.99
CHMP4C-201ENST00000297265 TDRD9Q8NDG6 1382 aaKnown RBP21.21■□□□□ 0.99
CHMP4C-201ENST00000297265 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
CHMP4C-201ENST00000297265 CUL7Q14999 1698 aa21.16■□□□□ 0.98
CHMP4C-201ENST00000297265 GAPVD1Q14C86 1478 aa21.15■□□□□ 0.98
CHMP4C-201ENST00000297265 ARHGAP35Q9NRY4 1499 aa21.15■□□□□ 0.98
CHMP4C-201ENST00000297265 WDR62O43379 1518 aa21.14■□□□□ 0.97
CHMP4C-201ENST00000297265 TTBK1Q5TCY1 1321 aaPredicted RBP21.09■□□□□ 0.97
CHMP4C-201ENST00000297265 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.96
CHMP4C-201ENST00000297265 THOC2Q8NI27 1593 aaKnown RBP21.03■□□□□ 0.96
CHMP4C-201ENST00000297265 ERCC6Q03468 1493 aa21.02■□□□□ 0.96
CHMP4C-201ENST00000297265 IFT140Q96RY7 1462 aa21.01■□□□□ 0.95
CHMP4C-201ENST00000297265 PBRM1Q86U86 1689 aa21■□□□□ 0.95
CHMP4C-201ENST00000297265 ZNF608Q9ULD9 1512 aaPredicted RBP20.99■□□□□ 0.95
CHMP4C-201ENST00000297265 CTTNBP2Q8WZ74 1663 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 210 ms