RNA–Protein interactions for RNA: ENST00000296142.3

RTP3-201, Transcript of receptor transporter protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTP3, Length 1,321 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTP3-201ENST00000296142 NISCHQ9Y2I1 1504 aa21.14■□□□□ 0.98
RTP3-201ENST00000296142 ABCC9O60706 1549 aa19.39■□□□□ 0.69
RTP3-201ENST00000296142 CCDC180Q9P1Z9 1646 aa19.03■□□□□ 0.64
RTP3-201ENST00000296142 DNAJC5BQ9UF47 199 aa18.41■□□□□ 0.54
RTP3-201ENST00000296142 RB1CC1Q8TDY2 1594 aa18.23■□□□□ 0.51
RTP3-201ENST00000296142 DCAF8L2P0C7V8 631 aa18.16■□□□□ 0.5
RTP3-201ENST00000296142 PABPN1Q86U42 306 aaKnown RBP eCLIP18.07■□□□□ 0.48
RTP3-201ENST00000296142 NACADO15069 1562 aa18.02■□□□□ 0.47
RTP3-201ENST00000296142 UNC13AQ9UPW8 1703 aa18■□□□□ 0.47
RTP3-201ENST00000296142 BICRAQ9NZM4 1560 aa17.78■□□□□ 0.44
RTP3-201ENST00000296142 MYO15BQ96JP2 1530 aa17.58■□□□□ 0.4
RTP3-201ENST00000296142 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
RTP3-201ENST00000296142 CC2D2AQ9P2K1 1620 aa17.46■□□□□ 0.39
RTP3-201ENST00000296142 ZCCHC6Q5VYS8 1495 aaKnown RBP17.46■□□□□ 0.39
RTP3-201ENST00000296142 CECR2Q9BXF3 1484 aa17.41■□□□□ 0.38
RTP3-201ENST00000296142 EIF4G1Q04637 1599 aaKnown RBP17.32■□□□□ 0.36
RTP3-201ENST00000296142 DCAF1Q9Y4B6 1507 aa17.32■□□□□ 0.36
RTP3-201ENST00000296142 SHROOM4Q9ULL8 1493 aa17.26■□□□□ 0.35
RTP3-201ENST00000296142 DNAJC5Q9H3Z4 198 aa16.93■□□□□ 0.3
RTP3-201ENST00000296142 ERCC6Q03468 1493 aa16.69■□□□□ 0.26
RTP3-201ENST00000296142 NCAPD3P42695 1498 aa16.63■□□□□ 0.25
RTP3-201ENST00000296142 CUX2O14529 1486 aa16.62■□□□□ 0.25
RTP3-201ENST00000296142 NESP48681 1621 aa16.62■□□□□ 0.25
RTP3-201ENST00000296142 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
RTP3-201ENST00000296142 SMARCA4P51532 1647 aa16.57■□□□□ 0.24
RTP3-201ENST00000296142 SMARCA2P51531 1590 aa16.51■□□□□ 0.23
RTP3-201ENST00000296142 HMGXB3Q12766 1538 aa16.48■□□□□ 0.23
RTP3-201ENST00000296142 BAZ1BQ9UIG0 1483 aaKnown RBP16.45■□□□□ 0.22
RTP3-201ENST00000296142 KIF21AQ7Z4S6 1674 aa16.41■□□□□ 0.22
RTP3-201ENST00000296142 THOC2Q8NI27 1593 aaKnown RBP16.4■□□□□ 0.22
RTP3-201ENST00000296142 BAZ1AQ9NRL2 1556 aaPredicted RBP16.4■□□□□ 0.22
RTP3-201ENST00000296142 MROH2BQ7Z745 1585 aa16.37■□□□□ 0.21
RTP3-201ENST00000296142 PEG3Q9GZU2 1588 aa16.31■□□□□ 0.2
RTP3-201ENST00000296142 LAMC3Q9Y6N6 1575 aa16.31■□□□□ 0.2
RTP3-201ENST00000296142 TRIM41Q8WV44 630 aa16.26■□□□□ 0.19
RTP3-201ENST00000296142 WIZO95785 1651 aa16.22■□□□□ 0.19
RTP3-201ENST00000296142 PDS5BQ9NTI5 1447 aa16.21■□□□□ 0.19
RTP3-201ENST00000296142 CADPSQ9ULU8 1353 aa16.14■□□□□ 0.17
RTP3-201ENST00000296142 MRC2Q9UBG0 1479 aa16.13■□□□□ 0.17
RTP3-201ENST00000296142 WDR62O43379 1518 aa16.07■□□□□ 0.16
RTP3-201ENST00000296142 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
RTP3-201ENST00000296142 FANCD2Q9BXW9 1451 aa16.01■□□□□ 0.15
RTP3-201ENST00000296142 URB2Q14146 1524 aaKnown RBP15.93■□□□□ 0.14
RTP3-201ENST00000296142 OSCARQ8IYS5 282 aa15.91■□□□□ 0.14
RTP3-201ENST00000296142 CFTRP13569 1480 aa15.9■□□□□ 0.14
RTP3-201ENST00000296142 RSF1Q96T23 1441 aaPredicted RBP15.9■□□□□ 0.14
RTP3-201ENST00000296142 TOP2AP11388 1531 aaKnown RBP15.87■□□□□ 0.13
RTP3-201ENST00000296142 PRDM2Q13029 1718 aa15.83■□□□□ 0.13
RTP3-201ENST00000296142 RIMBP3CA6NJZ7 1639 aa15.79■□□□□ 0.12
RTP3-201ENST00000296142 RIMBP3BA6NNM3 1639 aa15.79■□□□□ 0.12
RTP3-201ENST00000296142 RIMBP3Q9UFD9 1639 aa15.79■□□□□ 0.12
RTP3-201ENST00000296142 ZNF608Q9ULD9 1512 aaPredicted RBP15.79■□□□□ 0.12
RTP3-201ENST00000296142 CCDC88BA6NC98 1476 aa15.75■□□□□ 0.11
RTP3-201ENST00000296142 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
RTP3-201ENST00000296142 IFT140Q96RY7 1462 aa15.68■□□□□ 0.1
RTP3-201ENST00000296142 ARHGEF11O15085 1522 aa15.67■□□□□ 0.1
RTP3-201ENST00000296142 CHD1O14646 1710 aa15.67■□□□□ 0.1
RTP3-201ENST00000296142 EIF4G3O43432 1585 aaKnown RBP15.67■□□□□ 0.1
RTP3-201ENST00000296142 CYB5RLQ6IPT4 315 aa15.65■□□□□ 0.1
RTP3-201ENST00000296142 AQRO60306 1485 aaKnown RBP eCLIP15.63■□□□□ 0.09
RTP3-201ENST00000296142 FBLN2P98095 1184 aa15.63■□□□□ 0.09
RTP3-201ENST00000296142 DNMBPQ6XZF7 1577 aa15.59■□□□□ 0.09
RTP3-201ENST00000296142 TARBP1Q13395 1621 aaKnown RBP15.58■□□□□ 0.08
RTP3-201ENST00000296142 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
RTP3-201ENST00000296142 RAD54L2Q9Y4B4 1467 aa15.54■□□□□ 0.08
RTP3-201ENST00000296142 ABCC8Q09428 1581 aa15.53■□□□□ 0.08
RTP3-201ENST00000296142 POLA1P09884 1462 aaPredicted RBP15.51■□□□□ 0.07
RTP3-201ENST00000296142 ARAP1Q96P48 1450 aa15.51■□□□□ 0.07
RTP3-201ENST00000296142 TDRD9Q8NDG6 1382 aaKnown RBP15.5■□□□□ 0.07
RTP3-201ENST00000296142 SOGA1O94964 1423 aa15.45■□□□□ 0.06
RTP3-201ENST00000296142 SNAPC4Q5SXM2 1469 aa15.42■□□□□ 0.06
RTP3-201ENST00000296142 FGD5Q6ZNL6 1462 aa15.41■□□□□ 0.06
RTP3-201ENST00000296142 CHMP7Q8WUX9 453 aaPredicted RBP15.38■□□□□ 0.05
RTP3-201ENST00000296142 CUX1P39880 1505 aa15.37■□□□□ 0.05
RTP3-201ENST00000296142 CLASP1Q7Z460 1538 aa15.35■□□□□ 0.05
RTP3-201ENST00000296142 PBRM1Q86U86 1689 aa15.33■□□□□ 0.04
RTP3-201ENST00000296142 SYNJ1O43426 1573 aa15.32■□□□□ 0.04
RTP3-201ENST00000296142 WDR97A6NE52 1622 aa15.3■□□□□ 0.04
RTP3-201ENST00000296142 GRIN2BQ13224 1484 aa15.3■□□□□ 0.04
RTP3-201ENST00000296142 MAGI1Q96QZ7 1491 aaPredicted RBP15.28■□□□□ 0.04
RTP3-201ENST00000296142 SYNJ2O15056 1496 aa15.26■□□□□ 0.03
RTP3-201ENST00000296142 GAPVD1Q14C86 1478 aa15.25■□□□□ 0.03
RTP3-201ENST00000296142 ERCC6L2Q5T890 1561 aa15.23■□□□□ 0.03
RTP3-201ENST00000296142 SUPT5HO00267 1087 aaKnown RBP15.22■□□□□ 0.03
RTP3-201ENST00000296142 AEBP2Q6ZN18 517 aaPredicted RBP15.22■□□□□ 0.03
RTP3-201ENST00000296142 ABCA5Q8WWZ7 1642 aa15.19■□□□□ 0.02
RTP3-201ENST00000296142 ABCA10Q8WWZ4 1543 aa15.15■□□□□ 0.02
RTP3-201ENST00000296142 CEP170Q5SW79 1584 aa15.13■□□□□ 0.01
RTP3-201ENST00000296142 GRIN2AQ12879 1464 aa15.12■□□□□ 0.01
RTP3-201ENST00000296142 ADAMTS12P58397 1594 aa15.1■□□□□ 0.01
RTP3-201ENST00000296142 KIF13AQ9H1H9 1805 aa15.06■□□□□ 0
RTP3-201ENST00000296142 WRNQ14191 1432 aaPredicted RBP eCLIP15.06■□□□□ 0
RTP3-201ENST00000296142 BIVM-ERCC5R4GMW8 1640 aa15.05■□□□□ -0
RTP3-201ENST00000296142 NUP160Q12769 1436 aa15.03■□□□□ -0
RTP3-201ENST00000296142 TOP2BQ02880 1626 aa15.02■□□□□ -0
RTP3-201ENST00000296142 SHROOM2Q13796 1616 aa15.02■□□□□ -0
RTP3-201ENST00000296142 FHAD1B1AJZ9 1412 aa15.01□□□□□ -0.01
RTP3-201ENST00000296142 PRG4Q92954 1404 aaPredicted RBP14.99□□□□□ -0.01
RTP3-201ENST00000296142 TSPOAP1O95153 1857 aa14.95□□□□□ -0.02
RTP3-201ENST00000296142 JPH4Q96JJ6 628 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms