RNA–Protein interactions for RNA: ENST00000294489.10

PDPN-201, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 3,104 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-201ENST00000294489 NISCHQ9Y2I1 1504 aa20.78■□□□□ 0.92
PDPN-201ENST00000294489 CCDC180Q9P1Z9 1646 aa18.2■□□□□ 0.5
PDPN-201ENST00000294489 ZCCHC6Q5VYS8 1495 aaKnown RBP17.49■□□□□ 0.39
PDPN-201ENST00000294489 DCAF1Q9Y4B6 1507 aa17.28■□□□□ 0.36
PDPN-201ENST00000294489 MYO15BQ96JP2 1530 aa17.08■□□□□ 0.32
PDPN-201ENST00000294489 ABCC9O60706 1549 aa16.92■□□□□ 0.3
PDPN-201ENST00000294489 NACADO15069 1562 aa16.87■□□□□ 0.29
PDPN-201ENST00000294489 DCAF8L2P0C7V8 631 aa16.81■□□□□ 0.28
PDPN-201ENST00000294489 SHROOM4Q9ULL8 1493 aa16.75■□□□□ 0.27
PDPN-201ENST00000294489 RB1CC1Q8TDY2 1594 aa16.68■□□□□ 0.26
PDPN-201ENST00000294489 SCRIBQ14160 1630 aa16.59■□□□□ 0.25
PDPN-201ENST00000294489 UNC13AQ9UPW8 1703 aa16.45■□□□□ 0.22
PDPN-201ENST00000294489 BICRAQ9NZM4 1560 aa16.23■□□□□ 0.19
PDPN-201ENST00000294489 SUPT5HO00267 1087 aaKnown RBP16.11■□□□□ 0.17
PDPN-201ENST00000294489 RSF1Q96T23 1441 aaPredicted RBP16.1■□□□□ 0.17
PDPN-201ENST00000294489 CECR2Q9BXF3 1484 aa16.08■□□□□ 0.17
PDPN-201ENST00000294489 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
PDPN-201ENST00000294489 MROH2BQ7Z745 1585 aa16.03■□□□□ 0.16
PDPN-201ENST00000294489 SMARCA4P51532 1647 aa15.98■□□□□ 0.15
PDPN-201ENST00000294489 WIZO95785 1651 aa15.92■□□□□ 0.14
PDPN-201ENST00000294489 PABPN1Q86U42 306 aaKnown RBP eCLIP15.9■□□□□ 0.14
PDPN-201ENST00000294489 PEG3Q9GZU2 1588 aa15.86■□□□□ 0.13
PDPN-201ENST00000294489 TOP2AP11388 1531 aaKnown RBP15.78■□□□□ 0.12
PDPN-201ENST00000294489 SMARCA2P51531 1590 aa15.68■□□□□ 0.1
PDPN-201ENST00000294489 EIF4G1Q04637 1599 aaKnown RBP15.68■□□□□ 0.1
PDPN-201ENST00000294489 ATAD2BQ9ULI0 1458 aa15.66■□□□□ 0.1
PDPN-201ENST00000294489 CHIC1Q5VXU3 224 aa15.58■□□□□ 0.08
PDPN-201ENST00000294489 HMGXB3Q12766 1538 aa15.57■□□□□ 0.08
PDPN-201ENST00000294489 CCDC88BA6NC98 1476 aa15.57■□□□□ 0.08
PDPN-201ENST00000294489 NCAPD3P42695 1498 aa15.55■□□□□ 0.08
PDPN-201ENST00000294489 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
PDPN-201ENST00000294489 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
PDPN-201ENST00000294489 PRDM2Q13029 1718 aa15.27■□□□□ 0.03
PDPN-201ENST00000294489 ABCC8Q09428 1581 aa15.22■□□□□ 0.03
PDPN-201ENST00000294489 CFTRP13569 1480 aa15.21■□□□□ 0.03
PDPN-201ENST00000294489 TRIM41Q8WV44 630 aa15.2■□□□□ 0.02
PDPN-201ENST00000294489 SYNJ1O43426 1573 aa15.12■□□□□ 0.01
PDPN-201ENST00000294489 WRNQ14191 1432 aaPredicted RBP eCLIP15.12■□□□□ 0.01
PDPN-201ENST00000294489 BIVM-ERCC5R4GMW8 1640 aa15.11■□□□□ 0.01
PDPN-201ENST00000294489 CADPSQ9ULU8 1353 aa15.09■□□□□ 0.01
PDPN-201ENST00000294489 TOP2BQ02880 1626 aa15.09■□□□□ 0.01
PDPN-201ENST00000294489 LAMC3Q9Y6N6 1575 aa15.02■□□□□ -0
PDPN-201ENST00000294489 CUX1P39880 1505 aa15□□□□□ -0.01
PDPN-201ENST00000294489 EEA1Q15075 1411 aa14.98□□□□□ -0.01
PDPN-201ENST00000294489 SOGA1O94964 1423 aa14.93□□□□□ -0.02
PDPN-201ENST00000294489 FANCD2Q9BXW9 1451 aa14.93□□□□□ -0.02
PDPN-201ENST00000294489 NESP48681 1621 aa14.91□□□□□ -0.02
PDPN-201ENST00000294489 LOC105371045A0A1W2PR82 267 aa14.91□□□□□ -0.02
PDPN-201ENST00000294489 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
PDPN-201ENST00000294489 RUSC2Q8N2Y8 1516 aa14.88□□□□□ -0.03
PDPN-201ENST00000294489 DNMBPQ6XZF7 1577 aa14.87□□□□□ -0.03
PDPN-201ENST00000294489 KIF21BO75037 1637 aa14.84□□□□□ -0.03
PDPN-201ENST00000294489 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
PDPN-201ENST00000294489 FAM9AQ8IZU1 332 aaPredicted RBP14.83□□□□□ -0.04
PDPN-201ENST00000294489 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
PDPN-201ENST00000294489 PDS5BQ9NTI5 1447 aa14.82□□□□□ -0.04
PDPN-201ENST00000294489 TOPBP1Q92547 1522 aa14.8□□□□□ -0.04
PDPN-201ENST00000294489 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
PDPN-201ENST00000294489 FGD5Q6ZNL6 1462 aa14.78□□□□□ -0.04
PDPN-201ENST00000294489 URB2Q14146 1524 aaKnown RBP14.77□□□□□ -0.04
PDPN-201ENST00000294489 WDR97A6NE52 1622 aa14.75□□□□□ -0.05
PDPN-201ENST00000294489 GOLGA3Q08378 1498 aa14.74□□□□□ -0.05
PDPN-201ENST00000294489 KIF27Q86VH2 1401 aa14.72□□□□□ -0.05
PDPN-201ENST00000294489 ERICH3Q5RHP9 1530 aa14.72□□□□□ -0.05
PDPN-201ENST00000294489 POLA1P09884 1462 aaPredicted RBP14.72□□□□□ -0.05
PDPN-201ENST00000294489 PRXQ9BXM0 1461 aa14.71□□□□□ -0.05
PDPN-201ENST00000294489 TNIKQ9UKE5 1360 aa14.71□□□□□ -0.05
PDPN-201ENST00000294489 ABCA10Q8WWZ4 1543 aa14.71□□□□□ -0.05
PDPN-201ENST00000294489 MRC2Q9UBG0 1479 aa14.66□□□□□ -0.06
PDPN-201ENST00000294489 CUX2O14529 1486 aa14.65□□□□□ -0.06
PDPN-201ENST00000294489 WDR62O43379 1518 aa14.64□□□□□ -0.07
PDPN-201ENST00000294489 RAPGEF2Q9Y4G8 1499 aa14.64□□□□□ -0.07
PDPN-201ENST00000294489 TARBP1Q13395 1621 aaKnown RBP14.64□□□□□ -0.07
PDPN-201ENST00000294489 ABCA5Q8WWZ7 1642 aa14.63□□□□□ -0.07
PDPN-201ENST00000294489 RAD54L2Q9Y4B4 1467 aa14.63□□□□□ -0.07
PDPN-201ENST00000294489 IGF1RP08069 1367 aa14.61□□□□□ -0.07
PDPN-201ENST00000294489 EHMT2Q96KQ7 1210 aa14.6□□□□□ -0.07
PDPN-201ENST00000294489 CEP162Q5TB80 1403 aa14.6□□□□□ -0.07
PDPN-201ENST00000294489 THOC2Q8NI27 1593 aaKnown RBP14.6□□□□□ -0.07
PDPN-201ENST00000294489 CUL7Q14999 1698 aa14.58□□□□□ -0.08
PDPN-201ENST00000294489 PBRM1Q86U86 1689 aa14.51□□□□□ -0.09
PDPN-201ENST00000294489 UBTFP17480 764 aaKnown RBP14.5□□□□□ -0.09
PDPN-201ENST00000294489 PCGF6Q9BYE7 350 aa14.5□□□□□ -0.09
PDPN-201ENST00000294489 CARMIL1Q5VZK9 1371 aa14.5□□□□□ -0.09
PDPN-201ENST00000294489 IFT140Q96RY7 1462 aa14.5□□□□□ -0.09
PDPN-201ENST00000294489 GAPVD1Q14C86 1478 aa14.49□□□□□ -0.09
PDPN-201ENST00000294489 ERCC6Q03468 1493 aa14.48□□□□□ -0.09
PDPN-201ENST00000294489 CLIP1P30622 1438 aa14.46□□□□□ -0.09
PDPN-201ENST00000294489 CTTNBP2Q8WZ74 1663 aa14.44□□□□□ -0.1
PDPN-201ENST00000294489 TDRD9Q8NDG6 1382 aaKnown RBP14.43□□□□□ -0.1
PDPN-201ENST00000294489 TRIM26Q12899 539 aaPredicted RBP14.43□□□□□ -0.1
PDPN-201ENST00000294489 ADAMTS12P58397 1594 aa14.4□□□□□ -0.1
PDPN-201ENST00000294489 ARAP1Q96P48 1450 aa14.39□□□□□ -0.11
PDPN-201ENST00000294489 EIF4G3O43432 1585 aaKnown RBP14.39□□□□□ -0.11
PDPN-201ENST00000294489 VPS8Q8N3P4 1428 aa14.38□□□□□ -0.11
PDPN-201ENST00000294489 GRIN2BQ13224 1484 aa14.38□□□□□ -0.11
PDPN-201ENST00000294489 ZNF608Q9ULD9 1512 aaPredicted RBP14.37□□□□□ -0.11
PDPN-201ENST00000294489 ARHGAP35Q9NRY4 1499 aa14.36□□□□□ -0.11
PDPN-201ENST00000294489 AQRO60306 1485 aaKnown RBP eCLIP14.36□□□□□ -0.11
PDPN-201ENST00000294489 FHAD1B1AJZ9 1412 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms