RNA–Protein interactions for RNA: ENST00000291300.8

HIF3A-203, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-203ENST00000291300 NISCHQ9Y2I1 1504 aa37.27■■■■□ 3.56
HIF3A-203ENST00000291300 CCDC180Q9P1Z9 1646 aa32.21■■■□□ 2.75
HIF3A-203ENST00000291300 ZCCHC6Q5VYS8 1495 aaKnown RBP31.35■■■□□ 2.61
HIF3A-203ENST00000291300 SHROOM4Q9ULL8 1493 aa30.9■■■□□ 2.54
HIF3A-203ENST00000291300 DCAF8L2P0C7V8 631 aa30.9■■■□□ 2.54
HIF3A-203ENST00000291300 DCAF1Q9Y4B6 1507 aa30.65■■■□□ 2.5
HIF3A-203ENST00000291300 ABCC9O60706 1549 aa30.48■■■□□ 2.47
HIF3A-203ENST00000291300 MYO15BQ96JP2 1530 aa30.12■■■□□ 2.41
HIF3A-203ENST00000291300 NACADO15069 1562 aa29.94■■■□□ 2.38
HIF3A-203ENST00000291300 SCRIBQ14160 1630 aa29.92■■■□□ 2.38
HIF3A-203ENST00000291300 SUPT5HO00267 1087 aaKnown RBP29.82■■■□□ 2.36
HIF3A-203ENST00000291300 RB1CC1Q8TDY2 1594 aa29.65■■■□□ 2.34
HIF3A-203ENST00000291300 UNC13AQ9UPW8 1703 aa29.25■■■□□ 2.27
HIF3A-203ENST00000291300 CECR2Q9BXF3 1484 aa29.1■■■□□ 2.25
HIF3A-203ENST00000291300 RSF1Q96T23 1441 aaPredicted RBP29.09■■■□□ 2.25
HIF3A-203ENST00000291300 MROH2BQ7Z745 1585 aa28.91■■■□□ 2.22
HIF3A-203ENST00000291300 BICRAQ9NZM4 1560 aa28.91■■■□□ 2.22
HIF3A-203ENST00000291300 PABPN1Q86U42 306 aaKnown RBP eCLIP28.89■■■□□ 2.22
HIF3A-203ENST00000291300 WIZO95785 1651 aa28.71■■■□□ 2.19
HIF3A-203ENST00000291300 BAZ1AQ9NRL2 1556 aaPredicted RBP28.68■■■□□ 2.18
HIF3A-203ENST00000291300 CHIC1Q5VXU3 224 aa28.63■■■□□ 2.17
HIF3A-203ENST00000291300 SMARCA4P51532 1647 aa28.59■■■□□ 2.17
HIF3A-203ENST00000291300 TOP2AP11388 1531 aaKnown RBP28.27■■■□□ 2.12
HIF3A-203ENST00000291300 PEG3Q9GZU2 1588 aa28.14■■■□□ 2.09
HIF3A-203ENST00000291300 CCDC88BA6NC98 1476 aa28.09■■■□□ 2.09
HIF3A-203ENST00000291300 SMARCA2P51531 1590 aa28.09■■■□□ 2.09
HIF3A-203ENST00000291300 ATAD2BQ9ULI0 1458 aa28.06■■■□□ 2.08
HIF3A-203ENST00000291300 EIF4G1Q04637 1599 aaKnown RBP27.99■■■□□ 2.07
HIF3A-203ENST00000291300 BAZ1BQ9UIG0 1483 aaKnown RBP27.89■■■□□ 2.06
HIF3A-203ENST00000291300 TRIM41Q8WV44 630 aa27.88■■■□□ 2.05
HIF3A-203ENST00000291300 LOC105371045A0A1W2PR82 267 aa27.7■■■□□ 2.03
HIF3A-203ENST00000291300 NCAPD3P42695 1498 aa27.7■■■□□ 2.02
HIF3A-203ENST00000291300 ABCC8Q09428 1581 aa27.69■■■□□ 2.02
HIF3A-203ENST00000291300 HMGXB3Q12766 1538 aa27.64■■■□□ 2.02
HIF3A-203ENST00000291300 FAM9AQ8IZU1 332 aaPredicted RBP27.57■■■□□ 2
HIF3A-203ENST00000291300 CC2D2AQ9P2K1 1620 aa27.52■■■□□ 2
HIF3A-203ENST00000291300 WRNQ14191 1432 aaPredicted RBP eCLIP27.33■■□□□ 1.96
HIF3A-203ENST00000291300 EHMT2Q96KQ7 1210 aa27.31■■□□□ 1.96
HIF3A-203ENST00000291300 SYNJ1O43426 1573 aa27.29■■□□□ 1.96
HIF3A-203ENST00000291300 SOGA1O94964 1423 aa27.22■■□□□ 1.95
HIF3A-203ENST00000291300 CFTRP13569 1480 aa27.2■■□□□ 1.94
HIF3A-203ENST00000291300 RUSC2Q8N2Y8 1516 aa27.17■■□□□ 1.94
HIF3A-203ENST00000291300 CADPSQ9ULU8 1353 aa27.04■■□□□ 1.92
HIF3A-203ENST00000291300 DNAJC5BQ9UF47 199 aa27.04■■□□□ 1.92
HIF3A-203ENST00000291300 TOP2BQ02880 1626 aa27.04■■□□□ 1.92
HIF3A-203ENST00000291300 PRDM2Q13029 1718 aa27.02■■□□□ 1.92
HIF3A-203ENST00000291300 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
HIF3A-203ENST00000291300 CUX1P39880 1505 aa26.99■■□□□ 1.91
HIF3A-203ENST00000291300 CSRNP3Q8WYN3 585 aa26.93■■□□□ 1.9
HIF3A-203ENST00000291300 EEA1Q15075 1411 aa26.92■■□□□ 1.9
HIF3A-203ENST00000291300 NESP48681 1621 aa26.9■■□□□ 1.9
HIF3A-203ENST00000291300 FANCD2Q9BXW9 1451 aa26.78■■□□□ 1.88
HIF3A-203ENST00000291300 GOLGA3Q08378 1498 aa26.69■■□□□ 1.86
HIF3A-203ENST00000291300 TNIKQ9UKE5 1360 aa26.67■■□□□ 1.86
HIF3A-203ENST00000291300 PCGF6Q9BYE7 350 aa26.67■■□□□ 1.86
HIF3A-203ENST00000291300 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
HIF3A-203ENST00000291300 KIF21BO75037 1637 aa26.66■■□□□ 1.86
HIF3A-203ENST00000291300 UBTFP17480 764 aaKnown RBP26.66■■□□□ 1.86
HIF3A-203ENST00000291300 CEP164Q9UPV0 1460 aa26.64■■□□□ 1.86
HIF3A-203ENST00000291300 CEP162Q5TB80 1403 aa26.63■■□□□ 1.85
HIF3A-203ENST00000291300 FGD5Q6ZNL6 1462 aa26.62■■□□□ 1.85
HIF3A-203ENST00000291300 RAPGEF2Q9Y4G8 1499 aa26.61■■□□□ 1.85
HIF3A-203ENST00000291300 KIF27Q86VH2 1401 aa26.55■■□□□ 1.84
HIF3A-203ENST00000291300 DNMBPQ6XZF7 1577 aa26.54■■□□□ 1.84
HIF3A-203ENST00000291300 TOPBP1Q92547 1522 aa26.54■■□□□ 1.84
HIF3A-203ENST00000291300 CUX2O14529 1486 aa26.51■■□□□ 1.83
HIF3A-203ENST00000291300 PRXQ9BXM0 1461 aa26.5■■□□□ 1.83
HIF3A-203ENST00000291300 KIF21AQ7Z4S6 1674 aa26.49■■□□□ 1.83
HIF3A-203ENST00000291300 URB2Q14146 1524 aaKnown RBP26.49■■□□□ 1.83
HIF3A-203ENST00000291300 RAD54L2Q9Y4B4 1467 aa26.46■■□□□ 1.83
HIF3A-203ENST00000291300 PPARGC1BQ86YN6 1023 aaKnown RBP26.46■■□□□ 1.83
HIF3A-203ENST00000291300 PDS5BQ9NTI5 1447 aa26.46■■□□□ 1.83
HIF3A-203ENST00000291300 POLA1P09884 1462 aaPredicted RBP26.45■■□□□ 1.82
HIF3A-203ENST00000291300 TRIM26Q12899 539 aaPredicted RBP26.42■■□□□ 1.82
HIF3A-203ENST00000291300 ERICH3Q5RHP9 1530 aa26.4■■□□□ 1.82
HIF3A-203ENST00000291300 IGF1RP08069 1367 aa26.38■■□□□ 1.81
HIF3A-203ENST00000291300 RANGAP1P46060 587 aaPredicted RBP26.35■■□□□ 1.81
HIF3A-203ENST00000291300 CLIP1P30622 1438 aa26.33■■□□□ 1.81
HIF3A-203ENST00000291300 ABCA10Q8WWZ4 1543 aa26.32■■□□□ 1.8
HIF3A-203ENST00000291300 WDR97A6NE52 1622 aa26.24■■□□□ 1.79
HIF3A-203ENST00000291300 CARMIL1Q5VZK9 1371 aa26.22■■□□□ 1.79
HIF3A-203ENST00000291300 TTBK1Q5TCY1 1321 aaPredicted RBP26.18■■□□□ 1.78
HIF3A-203ENST00000291300 TDRD9Q8NDG6 1382 aaKnown RBP26.17■■□□□ 1.78
HIF3A-203ENST00000291300 MRC2Q9UBG0 1479 aa26.15■■□□□ 1.78
HIF3A-203ENST00000291300 TARBP1Q13395 1621 aaKnown RBP26.11■■□□□ 1.77
HIF3A-203ENST00000291300 VPS8Q8N3P4 1428 aa26.11■■□□□ 1.77
HIF3A-203ENST00000291300 ABCA5Q8WWZ7 1642 aa26.1■■□□□ 1.77
HIF3A-203ENST00000291300 ARAP1Q96P48 1450 aa26.09■■□□□ 1.77
HIF3A-203ENST00000291300 HRCP23327 699 aa26.05■■□□□ 1.76
HIF3A-203ENST00000291300 GAPVD1Q14C86 1478 aa26.04■■□□□ 1.76
HIF3A-203ENST00000291300 ARHGAP35Q9NRY4 1499 aa26.02■■□□□ 1.76
HIF3A-203ENST00000291300 CUL7Q14999 1698 aa26.01■■□□□ 1.75
HIF3A-203ENST00000291300 WDR62O43379 1518 aa26■■□□□ 1.75
HIF3A-203ENST00000291300 ERCC6Q03468 1493 aa25.98■■□□□ 1.75
HIF3A-203ENST00000291300 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.74
HIF3A-203ENST00000291300 THOC2Q8NI27 1593 aaKnown RBP25.91■■□□□ 1.74
HIF3A-203ENST00000291300 ZNF608Q9ULD9 1512 aaPredicted RBP25.9■■□□□ 1.74
HIF3A-203ENST00000291300 PBRM1Q86U86 1689 aa25.88■■□□□ 1.73
HIF3A-203ENST00000291300 IFT140Q96RY7 1462 aa25.84■■□□□ 1.73
HIF3A-203ENST00000291300 CTTNBP2Q8WZ74 1663 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms