RNA–Protein interactions for RNA: ENST00000289448.2

HMHB1-201, Transcript of histocompatibility minor HB-1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HMHB1, Length 384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMHB1-201ENST00000289448 NISCHQ9Y2I1 1504 aa23.74■■□□□ 1.39
HMHB1-201ENST00000289448 CCDC180Q9P1Z9 1646 aa21.15■□□□□ 0.98
HMHB1-201ENST00000289448 ABCC9O60706 1549 aa21.11■□□□□ 0.97
HMHB1-201ENST00000289448 RB1CC1Q8TDY2 1594 aa20.09■□□□□ 0.81
HMHB1-201ENST00000289448 DCAF8L2P0C7V8 631 aa20■□□□□ 0.79
HMHB1-201ENST00000289448 NACADO15069 1562 aa20■□□□□ 0.79
HMHB1-201ENST00000289448 MYO15BQ96JP2 1530 aa19.78■□□□□ 0.76
HMHB1-201ENST00000289448 DNAJC5BQ9UF47 199 aa19.76■□□□□ 0.75
HMHB1-201ENST00000289448 PABPN1Q86U42 306 aaKnown RBP eCLIP19.72■□□□□ 0.75
HMHB1-201ENST00000289448 ZCCHC6Q5VYS8 1495 aaKnown RBP19.7■□□□□ 0.74
HMHB1-201ENST00000289448 UNC13AQ9UPW8 1703 aa19.63■□□□□ 0.73
HMHB1-201ENST00000289448 DCAF1Q9Y4B6 1507 aa19.59■□□□□ 0.73
HMHB1-201ENST00000289448 BICRAQ9NZM4 1560 aa19.56■□□□□ 0.72
HMHB1-201ENST00000289448 SCRIBQ14160 1630 aa19.35■□□□□ 0.69
HMHB1-201ENST00000289448 SHROOM4Q9ULL8 1493 aa19.24■□□□□ 0.67
HMHB1-201ENST00000289448 CC2D2AQ9P2K1 1620 aa19.05■□□□□ 0.64
HMHB1-201ENST00000289448 EIF4G1Q04637 1599 aaKnown RBP19.04■□□□□ 0.64
HMHB1-201ENST00000289448 CECR2Q9BXF3 1484 aa18.99■□□□□ 0.63
HMHB1-201ENST00000289448 NCAPD3P42695 1498 aa18.51■□□□□ 0.55
HMHB1-201ENST00000289448 ATAD2BQ9ULI0 1458 aa18.48■□□□□ 0.55
HMHB1-201ENST00000289448 SMARCA4P51532 1647 aa18.45■□□□□ 0.54
HMHB1-201ENST00000289448 SMARCA2P51531 1590 aa18.38■□□□□ 0.53
HMHB1-201ENST00000289448 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
HMHB1-201ENST00000289448 HMGXB3Q12766 1538 aa18.33■□□□□ 0.53
HMHB1-201ENST00000289448 MROH2BQ7Z745 1585 aa18.32■□□□□ 0.52
HMHB1-201ENST00000289448 PEG3Q9GZU2 1588 aa18.28■□□□□ 0.52
HMHB1-201ENST00000289448 BAZ1BQ9UIG0 1483 aaKnown RBP18.27■□□□□ 0.52
HMHB1-201ENST00000289448 NESP48681 1621 aa18.2■□□□□ 0.5
HMHB1-201ENST00000289448 ERCC6Q03468 1493 aa18.17■□□□□ 0.5
HMHB1-201ENST00000289448 CUX2O14529 1486 aa18.08■□□□□ 0.49
HMHB1-201ENST00000289448 WIZO95785 1651 aa18.08■□□□□ 0.48
HMHB1-201ENST00000289448 LAMC3Q9Y6N6 1575 aa18.01■□□□□ 0.47
HMHB1-201ENST00000289448 RSF1Q96T23 1441 aaPredicted RBP18■□□□□ 0.47
HMHB1-201ENST00000289448 DNAJC5Q9H3Z4 198 aa17.97■□□□□ 0.47
HMHB1-201ENST00000289448 CADPSQ9ULU8 1353 aa17.96■□□□□ 0.47
HMHB1-201ENST00000289448 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
HMHB1-201ENST00000289448 THOC2Q8NI27 1593 aaKnown RBP17.92■□□□□ 0.46
HMHB1-201ENST00000289448 KIF21AQ7Z4S6 1674 aa17.89■□□□□ 0.45
HMHB1-201ENST00000289448 TOP2AP11388 1531 aaKnown RBP17.84■□□□□ 0.45
HMHB1-201ENST00000289448 CFTRP13569 1480 aa17.78■□□□□ 0.44
HMHB1-201ENST00000289448 MRC2Q9UBG0 1479 aa17.77■□□□□ 0.44
HMHB1-201ENST00000289448 FANCD2Q9BXW9 1451 aa17.75■□□□□ 0.43
HMHB1-201ENST00000289448 CEP164Q9UPV0 1460 aa17.72■□□□□ 0.43
HMHB1-201ENST00000289448 WDR62O43379 1518 aa17.72■□□□□ 0.43
HMHB1-201ENST00000289448 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
HMHB1-201ENST00000289448 URB2Q14146 1524 aaKnown RBP17.61■□□□□ 0.41
HMHB1-201ENST00000289448 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
HMHB1-201ENST00000289448 TOPBP1Q92547 1522 aa17.42■□□□□ 0.38
HMHB1-201ENST00000289448 ZNF608Q9ULD9 1512 aaPredicted RBP17.38■□□□□ 0.37
HMHB1-201ENST00000289448 IFT140Q96RY7 1462 aa17.37■□□□□ 0.37
HMHB1-201ENST00000289448 ABCC8Q09428 1581 aa17.34■□□□□ 0.37
HMHB1-201ENST00000289448 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
HMHB1-201ENST00000289448 SUPT5HO00267 1087 aaKnown RBP17.33■□□□□ 0.36
HMHB1-201ENST00000289448 OSCARQ8IYS5 282 aa17.32■□□□□ 0.36
HMHB1-201ENST00000289448 POLA1P09884 1462 aaPredicted RBP17.26■□□□□ 0.35
HMHB1-201ENST00000289448 TARBP1Q13395 1621 aaKnown RBP17.25■□□□□ 0.35
HMHB1-201ENST00000289448 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
HMHB1-201ENST00000289448 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.35
HMHB1-201ENST00000289448 EIF4G3O43432 1585 aaKnown RBP17.23■□□□□ 0.35
HMHB1-201ENST00000289448 RAD54L2Q9Y4B4 1467 aa17.22■□□□□ 0.35
HMHB1-201ENST00000289448 CUX1P39880 1505 aa17.19■□□□□ 0.34
HMHB1-201ENST00000289448 SOGA1O94964 1423 aa17.19■□□□□ 0.34
HMHB1-201ENST00000289448 FGD5Q6ZNL6 1462 aa17.17■□□□□ 0.34
HMHB1-201ENST00000289448 TDRD9Q8NDG6 1382 aaKnown RBP17.16■□□□□ 0.34
HMHB1-201ENST00000289448 FBLN2P98095 1184 aa17.08■□□□□ 0.32
HMHB1-201ENST00000289448 CHD1O14646 1710 aa17.05■□□□□ 0.32
HMHB1-201ENST00000289448 RIMBP3CA6NJZ7 1639 aa17.05■□□□□ 0.32
HMHB1-201ENST00000289448 RIMBP3BA6NNM3 1639 aa17.05■□□□□ 0.32
HMHB1-201ENST00000289448 RIMBP3Q9UFD9 1639 aa17.05■□□□□ 0.32
HMHB1-201ENST00000289448 SNAPC4Q5SXM2 1469 aa17.04■□□□□ 0.32
HMHB1-201ENST00000289448 ARHGEF11O15085 1522 aa17.03■□□□□ 0.32
HMHB1-201ENST00000289448 WDR97A6NE52 1622 aa17.02■□□□□ 0.31
HMHB1-201ENST00000289448 GRIN2BQ13224 1484 aa17■□□□□ 0.31
HMHB1-201ENST00000289448 ABCA10Q8WWZ4 1543 aa16.98■□□□□ 0.31
HMHB1-201ENST00000289448 CHMP7Q8WUX9 453 aaPredicted RBP16.97■□□□□ 0.31
HMHB1-201ENST00000289448 GAPVD1Q14C86 1478 aa16.97■□□□□ 0.31
HMHB1-201ENST00000289448 MAGI1Q96QZ7 1491 aaPredicted RBP16.97■□□□□ 0.31
HMHB1-201ENST00000289448 WRNQ14191 1432 aaPredicted RBP eCLIP16.95■□□□□ 0.3
HMHB1-201ENST00000289448 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
HMHB1-201ENST00000289448 CYB5RLQ6IPT4 315 aa16.93■□□□□ 0.3
HMHB1-201ENST00000289448 SYNJ2O15056 1496 aa16.93■□□□□ 0.3
HMHB1-201ENST00000289448 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
HMHB1-201ENST00000289448 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
HMHB1-201ENST00000289448 BIVM-ERCC5R4GMW8 1640 aa16.9■□□□□ 0.3
HMHB1-201ENST00000289448 ARAP1Q96P48 1450 aa16.9■□□□□ 0.3
HMHB1-201ENST00000289448 CLASP1Q7Z460 1538 aa16.9■□□□□ 0.3
HMHB1-201ENST00000289448 PBRM1Q86U86 1689 aa16.89■□□□□ 0.29
HMHB1-201ENST00000289448 GRIN2AQ12879 1464 aa16.79■□□□□ 0.28
HMHB1-201ENST00000289448 ADAMTS12P58397 1594 aa16.78■□□□□ 0.28
HMHB1-201ENST00000289448 FHAD1B1AJZ9 1412 aa16.76■□□□□ 0.27
HMHB1-201ENST00000289448 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
HMHB1-201ENST00000289448 NUP160Q12769 1436 aa16.74■□□□□ 0.27
HMHB1-201ENST00000289448 CEP170Q5SW79 1584 aa16.72■□□□□ 0.27
HMHB1-201ENST00000289448 ERCC6L2Q5T890 1561 aa16.68■□□□□ 0.26
HMHB1-201ENST00000289448 TRHP20396 242 aaPredicted RBP16.66■□□□□ 0.26
HMHB1-201ENST00000289448 IGF1RP08069 1367 aa16.64■□□□□ 0.26
HMHB1-201ENST00000289448 SHROOM2Q13796 1616 aa16.61■□□□□ 0.25
HMHB1-201ENST00000289448 KIF27Q86VH2 1401 aa16.6■□□□□ 0.25
HMHB1-201ENST00000289448 JPH4Q96JJ6 628 aa16.59■□□□□ 0.25
HMHB1-201ENST00000289448 PRG4Q92954 1404 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms