RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 NISCHQ9Y2I1 1504 aa19.85■□□□□ 0.77
PTPDC1-201ENST00000288976 CCDC180Q9P1Z9 1646 aa17.65■□□□□ 0.42
PTPDC1-201ENST00000288976 ZCCHC6Q5VYS8 1495 aaKnown RBP16.67■□□□□ 0.26
PTPDC1-201ENST00000288976 DCAF1Q9Y4B6 1507 aa16.59■□□□□ 0.25
PTPDC1-201ENST00000288976 MYO15BQ96JP2 1530 aa16.53■□□□□ 0.24
PTPDC1-201ENST00000288976 ABCC9O60706 1549 aa16.52■□□□□ 0.24
PTPDC1-201ENST00000288976 NACADO15069 1562 aa16.4■□□□□ 0.22
PTPDC1-201ENST00000288976 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
PTPDC1-201ENST00000288976 DCAF8L2P0C7V8 631 aa16.02■□□□□ 0.16
PTPDC1-201ENST00000288976 UNC13AQ9UPW8 1703 aa15.95■□□□□ 0.14
PTPDC1-201ENST00000288976 SCRIBQ14160 1630 aa15.92■□□□□ 0.14
PTPDC1-201ENST00000288976 SHROOM4Q9ULL8 1493 aa15.82■□□□□ 0.12
PTPDC1-201ENST00000288976 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
PTPDC1-201ENST00000288976 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
PTPDC1-201ENST00000288976 BAZ1AQ9NRL2 1556 aaPredicted RBP15.39■□□□□ 0.05
PTPDC1-201ENST00000288976 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
PTPDC1-201ENST00000288976 CECR2Q9BXF3 1484 aa15.29■□□□□ 0.04
PTPDC1-201ENST00000288976 EIF4G1Q04637 1599 aaKnown RBP15.29■□□□□ 0.04
PTPDC1-201ENST00000288976 PEG3Q9GZU2 1588 aa15.28■□□□□ 0.04
PTPDC1-201ENST00000288976 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
PTPDC1-201ENST00000288976 RSF1Q96T23 1441 aaPredicted RBP15.21■□□□□ 0.03
PTPDC1-201ENST00000288976 SMARCA2P51531 1590 aa15.19■□□□□ 0.02
PTPDC1-201ENST00000288976 WIZO95785 1651 aa15.12■□□□□ 0.01
PTPDC1-201ENST00000288976 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
PTPDC1-201ENST00000288976 CC2D2AQ9P2K1 1620 aa15.11■□□□□ 0.01
PTPDC1-201ENST00000288976 ATAD2BQ9ULI0 1458 aa15.09■□□□□ 0.01
PTPDC1-201ENST00000288976 TOP2AP11388 1531 aaKnown RBP15.08■□□□□ 0
PTPDC1-201ENST00000288976 NCAPD3P42695 1498 aa15.06■□□□□ 0
PTPDC1-201ENST00000288976 BAZ1BQ9UIG0 1483 aaKnown RBP14.99□□□□□ -0.01
PTPDC1-201ENST00000288976 SUPT5HO00267 1087 aaKnown RBP14.88□□□□□ -0.03
PTPDC1-201ENST00000288976 CCDC88BA6NC98 1476 aa14.78□□□□□ -0.04
PTPDC1-201ENST00000288976 PRDM2Q13029 1718 aa14.76□□□□□ -0.05
PTPDC1-201ENST00000288976 DNAJC5BQ9UF47 199 aa14.67□□□□□ -0.06
PTPDC1-201ENST00000288976 LAMC3Q9Y6N6 1575 aa14.66□□□□□ -0.06
PTPDC1-201ENST00000288976 CFTRP13569 1480 aa14.64□□□□□ -0.07
PTPDC1-201ENST00000288976 CADPSQ9ULU8 1353 aa14.58□□□□□ -0.08
PTPDC1-201ENST00000288976 PDS5BQ9NTI5 1447 aa14.45□□□□□ -0.1
PTPDC1-201ENST00000288976 NESP48681 1621 aa14.44□□□□□ -0.1
PTPDC1-201ENST00000288976 KIF21AQ7Z4S6 1674 aa14.43□□□□□ -0.1
PTPDC1-201ENST00000288976 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
PTPDC1-201ENST00000288976 BIVM-ERCC5R4GMW8 1640 aa14.42□□□□□ -0.1
PTPDC1-201ENST00000288976 CEP164Q9UPV0 1460 aa14.39□□□□□ -0.11
PTPDC1-201ENST00000288976 TOP2BQ02880 1626 aa14.37□□□□□ -0.11
PTPDC1-201ENST00000288976 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
PTPDC1-201ENST00000288976 DNMBPQ6XZF7 1577 aa14.35□□□□□ -0.11
PTPDC1-201ENST00000288976 WRNQ14191 1432 aaPredicted RBP eCLIP14.33□□□□□ -0.12
PTPDC1-201ENST00000288976 THOC2Q8NI27 1593 aaKnown RBP14.33□□□□□ -0.12
PTPDC1-201ENST00000288976 SYNJ1O43426 1573 aa14.32□□□□□ -0.12
PTPDC1-201ENST00000288976 MRC2Q9UBG0 1479 aa14.32□□□□□ -0.12
PTPDC1-201ENST00000288976 WDR62O43379 1518 aa14.31□□□□□ -0.12
PTPDC1-201ENST00000288976 CUX1P39880 1505 aa14.31□□□□□ -0.12
PTPDC1-201ENST00000288976 URB2Q14146 1524 aaKnown RBP14.26□□□□□ -0.13
PTPDC1-201ENST00000288976 ERCC6Q03468 1493 aa14.26□□□□□ -0.13
PTPDC1-201ENST00000288976 TOPBP1Q92547 1522 aa14.26□□□□□ -0.13
PTPDC1-201ENST00000288976 CHIC1Q5VXU3 224 aa14.24□□□□□ -0.13
PTPDC1-201ENST00000288976 WDR97A6NE52 1622 aa14.21□□□□□ -0.13
PTPDC1-201ENST00000288976 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
PTPDC1-201ENST00000288976 POLA1P09884 1462 aaPredicted RBP14.15□□□□□ -0.14
PTPDC1-201ENST00000288976 TARBP1Q13395 1621 aaKnown RBP14.14□□□□□ -0.15
PTPDC1-201ENST00000288976 TRIM41Q8WV44 630 aa14.13□□□□□ -0.15
PTPDC1-201ENST00000288976 ABCA10Q8WWZ4 1543 aa14.12□□□□□ -0.15
PTPDC1-201ENST00000288976 CUX2O14529 1486 aa14.11□□□□□ -0.15
PTPDC1-201ENST00000288976 IFT140Q96RY7 1462 aa14.11□□□□□ -0.15
PTPDC1-201ENST00000288976 EEA1Q15075 1411 aa14.11□□□□□ -0.15
PTPDC1-201ENST00000288976 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
PTPDC1-201ENST00000288976 SOGA1O94964 1423 aa14.05□□□□□ -0.16
PTPDC1-201ENST00000288976 PBRM1Q86U86 1689 aa14.01□□□□□ -0.17
PTPDC1-201ENST00000288976 KIF27Q86VH2 1401 aa14.01□□□□□ -0.17
PTPDC1-201ENST00000288976 RAD54L2Q9Y4B4 1467 aa14.01□□□□□ -0.17
PTPDC1-201ENST00000288976 ERICH3Q5RHP9 1530 aa14□□□□□ -0.17
PTPDC1-201ENST00000288976 CUL7Q14999 1698 aa14□□□□□ -0.17
PTPDC1-201ENST00000288976 EIF4G3O43432 1585 aaKnown RBP13.98□□□□□ -0.17
PTPDC1-201ENST00000288976 KIF21BO75037 1637 aa13.97□□□□□ -0.17
PTPDC1-201ENST00000288976 GAPVD1Q14C86 1478 aa13.93□□□□□ -0.18
PTPDC1-201ENST00000288976 GRIN2BQ13224 1484 aa13.91□□□□□ -0.18
PTPDC1-201ENST00000288976 RUSC2Q8N2Y8 1516 aa13.9□□□□□ -0.18
PTPDC1-201ENST00000288976 ADAMTS12P58397 1594 aa13.9□□□□□ -0.18
PTPDC1-201ENST00000288976 ZNF608Q9ULD9 1512 aaPredicted RBP13.88□□□□□ -0.19
PTPDC1-201ENST00000288976 PRXQ9BXM0 1461 aa13.88□□□□□ -0.19
PTPDC1-201ENST00000288976 MAGI1Q96QZ7 1491 aaPredicted RBP13.88□□□□□ -0.19
PTPDC1-201ENST00000288976 IGF1RP08069 1367 aa13.85□□□□□ -0.19
PTPDC1-201ENST00000288976 AQRO60306 1485 aaKnown RBP eCLIP13.83□□□□□ -0.2
PTPDC1-201ENST00000288976 CSRNP3Q8WYN3 585 aa13.83□□□□□ -0.2
PTPDC1-201ENST00000288976 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.2
PTPDC1-201ENST00000288976 GOLGA3Q08378 1498 aa13.83□□□□□ -0.2
PTPDC1-201ENST00000288976 FHAD1B1AJZ9 1412 aa13.82□□□□□ -0.2
PTPDC1-201ENST00000288976 RAPGEF2Q9Y4G8 1499 aa13.81□□□□□ -0.2
PTPDC1-201ENST00000288976 SNAPC4Q5SXM2 1469 aa13.8□□□□□ -0.2
PTPDC1-201ENST00000288976 CTTNBP2Q8WZ74 1663 aa13.79□□□□□ -0.2
PTPDC1-201ENST00000288976 SYNJ2O15056 1496 aa13.78□□□□□ -0.2
PTPDC1-201ENST00000288976 CARMIL1Q5VZK9 1371 aa13.78□□□□□ -0.2
PTPDC1-201ENST00000288976 GRIN2AQ12879 1464 aa13.73□□□□□ -0.21
PTPDC1-201ENST00000288976 CHD1O14646 1710 aa13.73□□□□□ -0.21
PTPDC1-201ENST00000288976 TNIKQ9UKE5 1360 aa13.7□□□□□ -0.22
PTPDC1-201ENST00000288976 FAM9AQ8IZU1 332 aaPredicted RBP13.69□□□□□ -0.22
PTPDC1-201ENST00000288976 NUP160Q12769 1436 aa13.68□□□□□ -0.22
PTPDC1-201ENST00000288976 CEP170Q5SW79 1584 aa13.67□□□□□ -0.22
PTPDC1-201ENST00000288976 IQGAP2Q13576 1575 aa13.64□□□□□ -0.23
PTPDC1-201ENST00000288976 EFCAB5A4FU69 1503 aa13.63□□□□□ -0.23
PTPDC1-201ENST00000288976 KIAA0586Q9BVV6 1533 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 211.5 ms