RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 NISCHQ9Y2I1 1504 aa31.94■■■□□ 2.7
CD44-203ENST00000278386 CCDC180Q9P1Z9 1646 aa28.76■■■□□ 2.19
CD44-203ENST00000278386 ABCC9O60706 1549 aa28.6■■■□□ 2.17
CD44-203ENST00000278386 RB1CC1Q8TDY2 1594 aa27.3■■□□□ 1.96
CD44-203ENST00000278386 NACADO15069 1562 aa27.09■■□□□ 1.93
CD44-203ENST00000278386 DCAF8L2P0C7V8 631 aa26.9■■□□□ 1.9
CD44-203ENST00000278386 UNC13AQ9UPW8 1703 aa26.78■■□□□ 1.88
CD44-203ENST00000278386 MYO15BQ96JP2 1530 aa26.68■■□□□ 1.86
CD44-203ENST00000278386 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
CD44-203ENST00000278386 PABPN1Q86U42 306 aaKnown RBP eCLIP26.56■■□□□ 1.84
CD44-203ENST00000278386 ZCCHC6Q5VYS8 1495 aaKnown RBP26.51■■□□□ 1.83
CD44-203ENST00000278386 BICRAQ9NZM4 1560 aa26.46■■□□□ 1.83
CD44-203ENST00000278386 DCAF1Q9Y4B6 1507 aa26.38■■□□□ 1.81
CD44-203ENST00000278386 SCRIBQ14160 1630 aa26.21■■□□□ 1.79
CD44-203ENST00000278386 SHROOM4Q9ULL8 1493 aa26.11■■□□□ 1.77
CD44-203ENST00000278386 CC2D2AQ9P2K1 1620 aa25.88■■□□□ 1.73
CD44-203ENST00000278386 EIF4G1Q04637 1599 aaKnown RBP25.82■■□□□ 1.72
CD44-203ENST00000278386 CECR2Q9BXF3 1484 aa25.75■■□□□ 1.71
CD44-203ENST00000278386 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
CD44-203ENST00000278386 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
CD44-203ENST00000278386 ATAD2BQ9ULI0 1458 aa24.89■■□□□ 1.58
CD44-203ENST00000278386 SMARCA2P51531 1590 aa24.89■■□□□ 1.58
CD44-203ENST00000278386 HMGXB3Q12766 1538 aa24.85■■□□□ 1.57
CD44-203ENST00000278386 BAZ1AQ9NRL2 1556 aaPredicted RBP24.84■■□□□ 1.57
CD44-203ENST00000278386 ERCC6Q03468 1493 aa24.74■■□□□ 1.55
CD44-203ENST00000278386 BAZ1BQ9UIG0 1483 aaKnown RBP24.72■■□□□ 1.55
CD44-203ENST00000278386 PEG3Q9GZU2 1588 aa24.67■■□□□ 1.54
CD44-203ENST00000278386 CUX2O14529 1486 aa24.63■■□□□ 1.53
CD44-203ENST00000278386 MROH2BQ7Z745 1585 aa24.62■■□□□ 1.53
CD44-203ENST00000278386 NESP48681 1621 aa24.58■■□□□ 1.53
CD44-203ENST00000278386 LAMC3Q9Y6N6 1575 aa24.46■■□□□ 1.51
CD44-203ENST00000278386 DNAJC5Q9H3Z4 198 aa24.41■■□□□ 1.5
CD44-203ENST00000278386 THOC2Q8NI27 1593 aaKnown RBP24.4■■□□□ 1.5
CD44-203ENST00000278386 WIZO95785 1651 aa24.4■■□□□ 1.5
CD44-203ENST00000278386 KIF21AQ7Z4S6 1674 aa24.39■■□□□ 1.49
CD44-203ENST00000278386 PDS5BQ9NTI5 1447 aa24.26■■□□□ 1.47
CD44-203ENST00000278386 CADPSQ9ULU8 1353 aa24.17■■□□□ 1.46
CD44-203ENST00000278386 RSF1Q96T23 1441 aaPredicted RBP24.09■■□□□ 1.45
CD44-203ENST00000278386 MRC2Q9UBG0 1479 aa24.08■■□□□ 1.45
CD44-203ENST00000278386 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.45
CD44-203ENST00000278386 WDR62O43379 1518 aa24.04■■□□□ 1.44
CD44-203ENST00000278386 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
CD44-203ENST00000278386 FANCD2Q9BXW9 1451 aa23.96■■□□□ 1.43
CD44-203ENST00000278386 CFTRP13569 1480 aa23.94■■□□□ 1.42
CD44-203ENST00000278386 PRDM2Q13029 1718 aa23.93■■□□□ 1.42
CD44-203ENST00000278386 URB2Q14146 1524 aaKnown RBP23.76■■□□□ 1.39
CD44-203ENST00000278386 CCDC88BA6NC98 1476 aa23.73■■□□□ 1.39
CD44-203ENST00000278386 TOPBP1Q92547 1522 aa23.53■■□□□ 1.36
CD44-203ENST00000278386 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
CD44-203ENST00000278386 DNMBPQ6XZF7 1577 aa23.48■■□□□ 1.35
CD44-203ENST00000278386 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
CD44-203ENST00000278386 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
CD44-203ENST00000278386 ZNF608Q9ULD9 1512 aaPredicted RBP23.44■■□□□ 1.34
CD44-203ENST00000278386 OSCARQ8IYS5 282 aa23.42■■□□□ 1.34
CD44-203ENST00000278386 EIF4G3O43432 1585 aaKnown RBP23.42■■□□□ 1.34
CD44-203ENST00000278386 TARBP1Q13395 1621 aaKnown RBP23.33■■□□□ 1.33
CD44-203ENST00000278386 POLA1P09884 1462 aaPredicted RBP23.29■■□□□ 1.32
CD44-203ENST00000278386 CHD1O14646 1710 aa23.28■■□□□ 1.32
CD44-203ENST00000278386 RIMBP3CA6NJZ7 1639 aa23.26■■□□□ 1.31
CD44-203ENST00000278386 RIMBP3BA6NNM3 1639 aa23.26■■□□□ 1.31
CD44-203ENST00000278386 RIMBP3Q9UFD9 1639 aa23.26■■□□□ 1.31
CD44-203ENST00000278386 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.31
CD44-203ENST00000278386 RAD54L2Q9Y4B4 1467 aa23.18■■□□□ 1.3
CD44-203ENST00000278386 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
CD44-203ENST00000278386 ARHGEF11O15085 1522 aa23.15■■□□□ 1.3
CD44-203ENST00000278386 CUX1P39880 1505 aa23.14■■□□□ 1.3
CD44-203ENST00000278386 SOGA1O94964 1423 aa23.14■■□□□ 1.29
CD44-203ENST00000278386 WDR97A6NE52 1622 aa23.13■■□□□ 1.29
CD44-203ENST00000278386 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
CD44-203ENST00000278386 TDRD9Q8NDG6 1382 aaKnown RBP23.07■■□□□ 1.28
CD44-203ENST00000278386 FBLN2P98095 1184 aa23.07■■□□□ 1.28
CD44-203ENST00000278386 SNAPC4Q5SXM2 1469 aa23.05■■□□□ 1.28
CD44-203ENST00000278386 PBRM1Q86U86 1689 aa23.03■■□□□ 1.28
CD44-203ENST00000278386 MAGI1Q96QZ7 1491 aaPredicted RBP22.98■■□□□ 1.27
CD44-203ENST00000278386 GRIN2BQ13224 1484 aa22.97■■□□□ 1.27
CD44-203ENST00000278386 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
CD44-203ENST00000278386 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
CD44-203ENST00000278386 ABCA5Q8WWZ7 1642 aa22.91■■□□□ 1.26
CD44-203ENST00000278386 CLASP1Q7Z460 1538 aa22.91■■□□□ 1.26
CD44-203ENST00000278386 CYB5RLQ6IPT4 315 aa22.89■■□□□ 1.25
CD44-203ENST00000278386 CHMP7Q8WUX9 453 aaPredicted RBP22.89■■□□□ 1.25
CD44-203ENST00000278386 SYNJ2O15056 1496 aa22.89■■□□□ 1.25
CD44-203ENST00000278386 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.25
CD44-203ENST00000278386 ABCA10Q8WWZ4 1543 aa22.88■■□□□ 1.25
CD44-203ENST00000278386 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
CD44-203ENST00000278386 TOP2BQ02880 1626 aa22.82■■□□□ 1.24
CD44-203ENST00000278386 WRNQ14191 1432 aaPredicted RBP eCLIP22.78■■□□□ 1.24
CD44-203ENST00000278386 ADAMTS12P58397 1594 aa22.75■■□□□ 1.23
CD44-203ENST00000278386 GRIN2AQ12879 1464 aa22.68■■□□□ 1.22
CD44-203ENST00000278386 TRHP20396 242 aaPredicted RBP22.67■■□□□ 1.22
CD44-203ENST00000278386 CEP170Q5SW79 1584 aa22.63■■□□□ 1.21
CD44-203ENST00000278386 ERICH3Q5RHP9 1530 aa22.62■■□□□ 1.21
CD44-203ENST00000278386 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
CD44-203ENST00000278386 NUP160Q12769 1436 aa22.57■■□□□ 1.2
CD44-203ENST00000278386 ERCC6L2Q5T890 1561 aa22.56■■□□□ 1.2
CD44-203ENST00000278386 SHROOM2Q13796 1616 aa22.53■■□□□ 1.2
CD44-203ENST00000278386 RUSC2Q8N2Y8 1516 aa22.43■■□□□ 1.18
CD44-203ENST00000278386 CUL7Q14999 1698 aa22.38■■□□□ 1.17
CD44-203ENST00000278386 PRG4Q92954 1404 aaPredicted RBP22.35■■□□□ 1.17
CD44-203ENST00000278386 KIF27Q86VH2 1401 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms