RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NISCHQ9Y2I1 1504 aa32.25■■■□□ 2.75
SS18-201ENST00000269137 CCDC180Q9P1Z9 1646 aa28.19■■■□□ 2.1
SS18-201ENST00000269137 ZCCHC6Q5VYS8 1495 aaKnown RBP27.07■■□□□ 1.92
SS18-201ENST00000269137 DCAF1Q9Y4B6 1507 aa26.73■■□□□ 1.87
SS18-201ENST00000269137 ABCC9O60706 1549 aa26.67■■□□□ 1.86
SS18-201ENST00000269137 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
SS18-201ENST00000269137 MYO15BQ96JP2 1530 aa26.47■■□□□ 1.83
SS18-201ENST00000269137 NACADO15069 1562 aa26.29■■□□□ 1.8
SS18-201ENST00000269137 SHROOM4Q9ULL8 1493 aa26.12■■□□□ 1.77
SS18-201ENST00000269137 RB1CC1Q8TDY2 1594 aa26.06■■□□□ 1.76
SS18-201ENST00000269137 SCRIBQ14160 1630 aa25.83■■□□□ 1.73
SS18-201ENST00000269137 UNC13AQ9UPW8 1703 aa25.49■■□□□ 1.67
SS18-201ENST00000269137 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
SS18-201ENST00000269137 PABPN1Q86U42 306 aaKnown RBP eCLIP25.12■■□□□ 1.61
SS18-201ENST00000269137 SUPT5HO00267 1087 aaKnown RBP25.11■■□□□ 1.61
SS18-201ENST00000269137 CECR2Q9BXF3 1484 aa25.03■■□□□ 1.6
SS18-201ENST00000269137 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
SS18-201ENST00000269137 BAZ1AQ9NRL2 1556 aaPredicted RBP24.91■■□□□ 1.58
SS18-201ENST00000269137 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
SS18-201ENST00000269137 SMARCA4P51532 1647 aa24.8■■□□□ 1.56
SS18-201ENST00000269137 WIZO95785 1651 aa24.65■■□□□ 1.54
SS18-201ENST00000269137 PEG3Q9GZU2 1588 aa24.55■■□□□ 1.52
SS18-201ENST00000269137 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
SS18-201ENST00000269137 TOP2AP11388 1531 aaKnown RBP24.44■■□□□ 1.5
SS18-201ENST00000269137 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
SS18-201ENST00000269137 SMARCA2P51531 1590 aa24.43■■□□□ 1.5
SS18-201ENST00000269137 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
SS18-201ENST00000269137 BAZ1BQ9UIG0 1483 aaKnown RBP24.27■■□□□ 1.48
SS18-201ENST00000269137 HMGXB3Q12766 1538 aa24.22■■□□□ 1.47
SS18-201ENST00000269137 CCDC88BA6NC98 1476 aa24.18■■□□□ 1.46
SS18-201ENST00000269137 CC2D2AQ9P2K1 1620 aa24.16■■□□□ 1.46
SS18-201ENST00000269137 CHIC1Q5VXU3 224 aa24.04■■□□□ 1.44
SS18-201ENST00000269137 CFTRP13569 1480 aa23.69■■□□□ 1.38
SS18-201ENST00000269137 TRIM41Q8WV44 630 aa23.66■■□□□ 1.38
SS18-201ENST00000269137 DNAJC5BQ9UF47 199 aa23.63■■□□□ 1.37
SS18-201ENST00000269137 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
SS18-201ENST00000269137 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
SS18-201ENST00000269137 PRDM2Q13029 1718 aa23.54■■□□□ 1.36
SS18-201ENST00000269137 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
SS18-201ENST00000269137 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
SS18-201ENST00000269137 SYNJ1O43426 1573 aa23.39■■□□□ 1.33
SS18-201ENST00000269137 NESP48681 1621 aa23.38■■□□□ 1.33
SS18-201ENST00000269137 TOP2BQ02880 1626 aa23.34■■□□□ 1.33
SS18-201ENST00000269137 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.33
SS18-201ENST00000269137 BIVM-ERCC5R4GMW8 1640 aa23.31■■□□□ 1.32
SS18-201ENST00000269137 CUX1P39880 1505 aa23.28■■□□□ 1.32
SS18-201ENST00000269137 PDS5BQ9NTI5 1447 aa23.27■■□□□ 1.32
SS18-201ENST00000269137 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
SS18-201ENST00000269137 EEA1Q15075 1411 aa23.16■■□□□ 1.3
SS18-201ENST00000269137 FAM9AQ8IZU1 332 aaPredicted RBP23.16■■□□□ 1.3
SS18-201ENST00000269137 SOGA1O94964 1423 aa23.15■■□□□ 1.3
SS18-201ENST00000269137 DNMBPQ6XZF7 1577 aa23.12■■□□□ 1.29
SS18-201ENST00000269137 KIF21AQ7Z4S6 1674 aa23.11■■□□□ 1.29
SS18-201ENST00000269137 TOPBP1Q92547 1522 aa23.08■■□□□ 1.28
SS18-201ENST00000269137 LOC105371045A0A1W2PR82 267 aa23.07■■□□□ 1.28
SS18-201ENST00000269137 RUSC2Q8N2Y8 1516 aa23.05■■□□□ 1.28
SS18-201ENST00000269137 URB2Q14146 1524 aaKnown RBP23.04■■□□□ 1.28
SS18-201ENST00000269137 FGD5Q6ZNL6 1462 aa23.03■■□□□ 1.28
SS18-201ENST00000269137 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
SS18-201ENST00000269137 POLA1P09884 1462 aaPredicted RBP22.95■■□□□ 1.27
SS18-201ENST00000269137 MRC2Q9UBG0 1479 aa22.95■■□□□ 1.27
SS18-201ENST00000269137 KIF27Q86VH2 1401 aa22.93■■□□□ 1.26
SS18-201ENST00000269137 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
SS18-201ENST00000269137 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
SS18-201ENST00000269137 CUX2O14529 1486 aa22.86■■□□□ 1.25
SS18-201ENST00000269137 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
SS18-201ENST00000269137 WDR62O43379 1518 aa22.84■■□□□ 1.25
SS18-201ENST00000269137 KIF21BO75037 1637 aa22.83■■□□□ 1.24
SS18-201ENST00000269137 GOLGA3Q08378 1498 aa22.79■■□□□ 1.24
SS18-201ENST00000269137 THOC2Q8NI27 1593 aaKnown RBP22.78■■□□□ 1.24
SS18-201ENST00000269137 WDR97A6NE52 1622 aa22.77■■□□□ 1.24
SS18-201ENST00000269137 EHMT2Q96KQ7 1210 aa22.77■■□□□ 1.24
SS18-201ENST00000269137 PRXQ9BXM0 1461 aa22.76■■□□□ 1.23
SS18-201ENST00000269137 IGF1RP08069 1367 aa22.75■■□□□ 1.23
SS18-201ENST00000269137 TARBP1Q13395 1621 aaKnown RBP22.74■■□□□ 1.23
SS18-201ENST00000269137 TNIKQ9UKE5 1360 aa22.72■■□□□ 1.23
SS18-201ENST00000269137 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
SS18-201ENST00000269137 RAPGEF2Q9Y4G8 1499 aa22.69■■□□□ 1.22
SS18-201ENST00000269137 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
SS18-201ENST00000269137 ABCA5Q8WWZ7 1642 aa22.67■■□□□ 1.22
SS18-201ENST00000269137 UBTFP17480 764 aaKnown RBP22.66■■□□□ 1.22
SS18-201ENST00000269137 TDRD9Q8NDG6 1382 aaKnown RBP22.64■■□□□ 1.22
SS18-201ENST00000269137 GAPVD1Q14C86 1478 aa22.63■■□□□ 1.21
SS18-201ENST00000269137 CARMIL1Q5VZK9 1371 aa22.62■■□□□ 1.21
SS18-201ENST00000269137 CUL7Q14999 1698 aa22.57■■□□□ 1.2
SS18-201ENST00000269137 CEP162Q5TB80 1403 aa22.55■■□□□ 1.2
SS18-201ENST00000269137 AQRO60306 1485 aaKnown RBP eCLIP22.52■■□□□ 1.23e-6■■■■□ 24.5
SS18-201ENST00000269137 ZNF608Q9ULD9 1512 aaPredicted RBP22.51■■□□□ 1.19
SS18-201ENST00000269137 PBRM1Q86U86 1689 aa22.48■■□□□ 1.19
SS18-201ENST00000269137 GRIN2BQ13224 1484 aa22.48■■□□□ 1.19
SS18-201ENST00000269137 EIF4G3O43432 1585 aaKnown RBP22.43■■□□□ 1.18
SS18-201ENST00000269137 CLIP1P30622 1438 aa22.42■■□□□ 1.18
SS18-201ENST00000269137 FHAD1B1AJZ9 1412 aa22.4■■□□□ 1.18
SS18-201ENST00000269137 ADAMTS12P58397 1594 aa22.37■■□□□ 1.17
SS18-201ENST00000269137 MAGI1Q96QZ7 1491 aaPredicted RBP22.31■■□□□ 1.16
SS18-201ENST00000269137 SNAPC4Q5SXM2 1469 aa22.31■■□□□ 1.16
SS18-201ENST00000269137 CTTNBP2Q8WZ74 1663 aa22.27■■□□□ 1.16
SS18-201ENST00000269137 RANGAP1P46060 587 aaPredicted RBP22.24■■□□□ 1.15
SS18-201ENST00000269137 ARHGAP35Q9NRY4 1499 aa22.22■■□□□ 1.15
SS18-201ENST00000269137 SYNJ2O15056 1496 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms