RNA–Protein interactions for RNA: ENST00000258909.13

TM6SF1-201, Transcript of transmembrane 6 superfamily member 1, humanhuman

TSL 1 (best)

Gene TM6SF1, Length 1,469 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM6SF1-201ENST00000258909 NISCHQ9Y2I1 1504 aa47.28■■■■■ 5.16
TM6SF1-201ENST00000258909 CCDC180Q9P1Z9 1646 aa42.27■■■■■ 4.36
TM6SF1-201ENST00000258909 ABCC9O60706 1549 aa42.17■■■■■ 4.34
TM6SF1-201ENST00000258909 RB1CC1Q8TDY2 1594 aa40.15■■■■■ 4.02
TM6SF1-201ENST00000258909 DCAF8L2P0C7V8 631 aa39.94■■■■□ 3.98
TM6SF1-201ENST00000258909 NACADO15069 1562 aa39.91■■■■□ 3.98
TM6SF1-201ENST00000258909 DNAJC5BQ9UF47 199 aa39.38■■■■□ 3.9
TM6SF1-201ENST00000258909 MYO15BQ96JP2 1530 aa39.38■■■■□ 3.89
TM6SF1-201ENST00000258909 PABPN1Q86U42 306 aaKnown RBP eCLIP39.34■■■■□ 3.89
TM6SF1-201ENST00000258909 UNC13AQ9UPW8 1703 aa39.32■■■■□ 3.88
TM6SF1-201ENST00000258909 ZCCHC6Q5VYS8 1495 aaKnown RBP39.21■■■■□ 3.87
TM6SF1-201ENST00000258909 BICRAQ9NZM4 1560 aa39.01■■■■□ 3.84
TM6SF1-201ENST00000258909 DCAF1Q9Y4B6 1507 aa38.99■■■■□ 3.83
TM6SF1-201ENST00000258909 SCRIBQ14160 1630 aa38.64■■■■□ 3.78
TM6SF1-201ENST00000258909 SHROOM4Q9ULL8 1493 aa38.38■■■■□ 3.73
TM6SF1-201ENST00000258909 CC2D2AQ9P2K1 1620 aa38.07■■■■□ 3.68
TM6SF1-201ENST00000258909 EIF4G1Q04637 1599 aaKnown RBP38.02■■■■□ 3.68
TM6SF1-201ENST00000258909 CECR2Q9BXF3 1484 aa37.92■■■■□ 3.66
TM6SF1-201ENST00000258909 NCAPD3P42695 1498 aa36.86■■■■□ 3.49
TM6SF1-201ENST00000258909 SMARCA4P51532 1647 aa36.83■■■■□ 3.49
TM6SF1-201ENST00000258909 ATAD2BQ9ULI0 1458 aa36.81■■■■□ 3.48
TM6SF1-201ENST00000258909 SMARCA2P51531 1590 aa36.69■■■■□ 3.46
TM6SF1-201ENST00000258909 BAZ1AQ9NRL2 1556 aaPredicted RBP36.66■■■■□ 3.46
TM6SF1-201ENST00000258909 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
TM6SF1-201ENST00000258909 MROH2BQ7Z745 1585 aa36.47■■■■□ 3.43
TM6SF1-201ENST00000258909 BAZ1BQ9UIG0 1483 aaKnown RBP36.47■■■■□ 3.43
TM6SF1-201ENST00000258909 PEG3Q9GZU2 1588 aa36.42■■■■□ 3.42
TM6SF1-201ENST00000258909 ERCC6Q03468 1493 aa36.36■■■■□ 3.41
TM6SF1-201ENST00000258909 NESP48681 1621 aa36.3■■■■□ 3.4
TM6SF1-201ENST00000258909 CUX2O14529 1486 aa36.14■■■■□ 3.38
TM6SF1-201ENST00000258909 WIZO95785 1651 aa36.07■■■■□ 3.36
TM6SF1-201ENST00000258909 LAMC3Q9Y6N6 1575 aa35.99■■■■□ 3.35
TM6SF1-201ENST00000258909 DNAJC5Q9H3Z4 198 aa35.92■■■■□ 3.34
TM6SF1-201ENST00000258909 THOC2Q8NI27 1593 aaKnown RBP35.82■■■■□ 3.32
TM6SF1-201ENST00000258909 KIF21AQ7Z4S6 1674 aa35.82■■■■□ 3.32
TM6SF1-201ENST00000258909 RSF1Q96T23 1441 aaPredicted RBP35.79■■■■□ 3.32
TM6SF1-201ENST00000258909 PDS5BQ9NTI5 1447 aa35.78■■■■□ 3.32
TM6SF1-201ENST00000258909 CADPSQ9ULU8 1353 aa35.77■■■■□ 3.32
TM6SF1-201ENST00000258909 TOP2AP11388 1531 aaKnown RBP35.56■■■■□ 3.28
TM6SF1-201ENST00000258909 MRC2Q9UBG0 1479 aa35.47■■■■□ 3.27
TM6SF1-201ENST00000258909 CFTRP13569 1480 aa35.4■■■■□ 3.26
TM6SF1-201ENST00000258909 FANCD2Q9BXW9 1451 aa35.39■■■■□ 3.26
TM6SF1-201ENST00000258909 CEP164Q9UPV0 1460 aa35.39■■■■□ 3.26
TM6SF1-201ENST00000258909 WDR62O43379 1518 aa35.37■■■■□ 3.25
TM6SF1-201ENST00000258909 CCDC88BA6NC98 1476 aa35.2■■■■□ 3.23
TM6SF1-201ENST00000258909 URB2Q14146 1524 aaKnown RBP35.09■■■■□ 3.21
TM6SF1-201ENST00000258909 PRDM2Q13029 1718 aa35.08■■■■□ 3.21
TM6SF1-201ENST00000258909 TOPBP1Q92547 1522 aa34.74■■■■□ 3.15
TM6SF1-201ENST00000258909 IFT140Q96RY7 1462 aa34.66■■■■□ 3.14
TM6SF1-201ENST00000258909 ZNF608Q9ULD9 1512 aaPredicted RBP34.65■■■■□ 3.14
TM6SF1-201ENST00000258909 ABCC8Q09428 1581 aa34.62■■■■□ 3.13
TM6SF1-201ENST00000258909 DNMBPQ6XZF7 1577 aa34.62■■■■□ 3.13
TM6SF1-201ENST00000258909 OSCARQ8IYS5 282 aa34.59■■■■□ 3.13
TM6SF1-201ENST00000258909 TRIM41Q8WV44 630 aa34.53■■■■□ 3.12
TM6SF1-201ENST00000258909 SUPT5HO00267 1087 aaKnown RBP34.49■■■■□ 3.11
TM6SF1-201ENST00000258909 EIF4G3O43432 1585 aaKnown RBP34.44■■■■□ 3.1
TM6SF1-201ENST00000258909 TARBP1Q13395 1621 aaKnown RBP34.41■■■■□ 3.1
TM6SF1-201ENST00000258909 POLA1P09884 1462 aaPredicted RBP34.4■■■■□ 3.1
TM6SF1-201ENST00000258909 AQRO60306 1485 aaKnown RBP eCLIP34.37■■■■□ 3.09
TM6SF1-201ENST00000258909 RAD54L2Q9Y4B4 1467 aa34.33■■■■□ 3.09
TM6SF1-201ENST00000258909 SOGA1O94964 1423 aa34.26■■■■□ 3.08
TM6SF1-201ENST00000258909 CUX1P39880 1505 aa34.24■■■■□ 3.07
TM6SF1-201ENST00000258909 FGD5Q6ZNL6 1462 aa34.24■■■■□ 3.07
TM6SF1-201ENST00000258909 TDRD9Q8NDG6 1382 aaKnown RBP34.2■■■■□ 3.07
TM6SF1-201ENST00000258909 CHD1O14646 1710 aa34.16■■■■□ 3.06
TM6SF1-201ENST00000258909 FBLN2P98095 1184 aa34.14■■■■□ 3.06
TM6SF1-201ENST00000258909 RIMBP3CA6NJZ7 1639 aa34.14■■■■□ 3.06
TM6SF1-201ENST00000258909 RIMBP3BA6NNM3 1639 aa34.14■■■■□ 3.06
TM6SF1-201ENST00000258909 RIMBP3Q9UFD9 1639 aa34.14■■■■□ 3.06
TM6SF1-201ENST00000258909 ARHGEF11O15085 1522 aa34.03■■■■□ 3.04
TM6SF1-201ENST00000258909 SNAPC4Q5SXM2 1469 aa34■■■■□ 3.03
TM6SF1-201ENST00000258909 WDR97A6NE52 1622 aa33.99■■■■□ 3.03
TM6SF1-201ENST00000258909 GRIN2BQ13224 1484 aa33.91■■■■□ 3.02
TM6SF1-201ENST00000258909 CHMP7Q8WUX9 453 aaPredicted RBP33.88■■■■□ 3.01
TM6SF1-201ENST00000258909 MAGI1Q96QZ7 1491 aaPredicted RBP33.86■■■■□ 3.01
TM6SF1-201ENST00000258909 GAPVD1Q14C86 1478 aa33.83■■■■□ 3.01
TM6SF1-201ENST00000258909 CYB5RLQ6IPT4 315 aa33.83■■■■□ 3.01
TM6SF1-201ENST00000258909 PBRM1Q86U86 1689 aa33.83■■■■□ 3.01
TM6SF1-201ENST00000258909 ABCA10Q8WWZ4 1543 aa33.82■■■■□ 3
TM6SF1-201ENST00000258909 SYNJ2O15056 1496 aa33.77■■■■□ 3
TM6SF1-201ENST00000258909 ABCA5Q8WWZ7 1642 aa33.76■■■■□ 3
TM6SF1-201ENST00000258909 WRNQ14191 1432 aaPredicted RBP eCLIP33.75■■■□□ 2.99
TM6SF1-201ENST00000258909 SYNJ1O43426 1573 aa33.74■■■□□ 2.99
TM6SF1-201ENST00000258909 CLASP1Q7Z460 1538 aa33.73■■■□□ 2.99
TM6SF1-201ENST00000258909 TOP2BQ02880 1626 aa33.73■■■□□ 2.99
TM6SF1-201ENST00000258909 BIVM-ERCC5R4GMW8 1640 aa33.73■■■□□ 2.99
TM6SF1-201ENST00000258909 ARAP1Q96P48 1450 aa33.72■■■□□ 2.99
TM6SF1-201ENST00000258909 ADAMTS12P58397 1594 aa33.5■■■□□ 2.95
TM6SF1-201ENST00000258909 GRIN2AQ12879 1464 aa33.48■■■□□ 2.95
TM6SF1-201ENST00000258909 FHAD1B1AJZ9 1412 aa33.4■■■□□ 2.94
TM6SF1-201ENST00000258909 TRHP20396 242 aaPredicted RBP33.38■■■□□ 2.93
TM6SF1-201ENST00000258909 ERICH3Q5RHP9 1530 aa33.38■■■□□ 2.93
TM6SF1-201ENST00000258909 CEP170Q5SW79 1584 aa33.38■■■□□ 2.93
TM6SF1-201ENST00000258909 NUP160Q12769 1436 aa33.33■■■□□ 2.93
TM6SF1-201ENST00000258909 ERCC6L2Q5T890 1561 aa33.3■■■□□ 2.92
TM6SF1-201ENST00000258909 SHROOM2Q13796 1616 aa33.17■■■□□ 2.9
TM6SF1-201ENST00000258909 KIF27Q86VH2 1401 aa33.08■■■□□ 2.89
TM6SF1-201ENST00000258909 IGF1RP08069 1367 aa33.06■■■□□ 2.88
TM6SF1-201ENST00000258909 PRG4Q92954 1404 aaPredicted RBP33.05■■■□□ 2.88
TM6SF1-201ENST00000258909 JPH4Q96JJ6 628 aa33.05■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms