RNA–Protein interactions for RNA: ENST00000229829.6

HLA-DOA-201, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

APPRIS P1 BASIC

Gene HLA-DOA, Length 3,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-201ENST00000229829 NISCHQ9Y2I1 1504 aa20.51■□□□□ 0.87
HLA-DOA-201ENST00000229829 CCDC180Q9P1Z9 1646 aa19.4■□□□□ 0.7
HLA-DOA-201ENST00000229829 MYO15BQ96JP2 1530 aa18.32■□□□□ 0.52
HLA-DOA-201ENST00000229829 DCAF1Q9Y4B6 1507 aa18■□□□□ 0.47
HLA-DOA-201ENST00000229829 SHROOM4Q9ULL8 1493 aa17.81■□□□□ 0.44
HLA-DOA-201ENST00000229829 NACADO15069 1562 aa17.66■□□□□ 0.42
HLA-DOA-201ENST00000229829 UNC13AQ9UPW8 1703 aa17.61■□□□□ 0.41
HLA-DOA-201ENST00000229829 RB1CC1Q8TDY2 1594 aa17.41■□□□□ 0.38
HLA-DOA-201ENST00000229829 ZCCHC6Q5VYS8 1495 aaKnown RBP17.33■□□□□ 0.37
HLA-DOA-201ENST00000229829 BICRAQ9NZM4 1560 aa17.15■□□□□ 0.34
HLA-DOA-201ENST00000229829 ABCC9O60706 1549 aa16.76■□□□□ 0.27
HLA-DOA-201ENST00000229829 PEG3Q9GZU2 1588 aa16.72■□□□□ 0.27
HLA-DOA-201ENST00000229829 SMARCA2P51531 1590 aa16.44■□□□□ 0.22
HLA-DOA-201ENST00000229829 PRDM2Q13029 1718 aa16.35■□□□□ 0.21
HLA-DOA-201ENST00000229829 HMGXB3Q12766 1538 aa16.35■□□□□ 0.21
HLA-DOA-201ENST00000229829 EIF4G1Q04637 1599 aaKnown RBP16.3■□□□□ 0.2
HLA-DOA-201ENST00000229829 SUPT5HO00267 1087 aaKnown RBP16.2■□□□□ 0.18
HLA-DOA-201ENST00000229829 CC2D2AQ9P2K1 1620 aa16.15■□□□□ 0.18
HLA-DOA-201ENST00000229829 SMARCA4P51532 1647 aa16.11■□□□□ 0.17
HLA-DOA-201ENST00000229829 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
HLA-DOA-201ENST00000229829 NCAPD3P42695 1498 aa16.01■□□□□ 0.15
HLA-DOA-201ENST00000229829 BAZ1AQ9NRL2 1556 aaPredicted RBP15.95■□□□□ 0.14
HLA-DOA-201ENST00000229829 DCAF8L2P0C7V8 631 aa15.91■□□□□ 0.14
HLA-DOA-201ENST00000229829 WDR97A6NE52 1622 aa15.84■□□□□ 0.13
HLA-DOA-201ENST00000229829 LAMC3Q9Y6N6 1575 aa15.8■□□□□ 0.12
HLA-DOA-201ENST00000229829 THOC2Q8NI27 1593 aaKnown RBP15.8■□□□□ 0.12
HLA-DOA-201ENST00000229829 CHIC1Q5VXU3 224 aa15.75■□□□□ 0.11
HLA-DOA-201ENST00000229829 ATAD2BQ9ULI0 1458 aa15.67■□□□□ 0.1
HLA-DOA-201ENST00000229829 CUX2O14529 1486 aa15.64■□□□□ 0.09
HLA-DOA-201ENST00000229829 TOP2AP11388 1531 aaKnown RBP15.61■□□□□ 0.09
HLA-DOA-201ENST00000229829 WDR62O43379 1518 aa15.56■□□□□ 0.08
HLA-DOA-201ENST00000229829 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.07
HLA-DOA-201ENST00000229829 PPARGC1BQ86YN6 1023 aaKnown RBP15.47■□□□□ 0.07
HLA-DOA-201ENST00000229829 HRCP23327 699 aa15.45■□□□□ 0.06
HLA-DOA-201ENST00000229829 KIF21AQ7Z4S6 1674 aa15.45■□□□□ 0.06
HLA-DOA-201ENST00000229829 PCGF6Q9BYE7 350 aa15.45■□□□□ 0.06
HLA-DOA-201ENST00000229829 MROH2BQ7Z745 1585 aa15.43■□□□□ 0.06
HLA-DOA-201ENST00000229829 LOC105371045A0A1W2PR82 267 aa15.38■□□□□ 0.05
HLA-DOA-201ENST00000229829 WIZO95785 1651 aa15.33■□□□□ 0.04
HLA-DOA-201ENST00000229829 DNAJC5BQ9UF47 199 aa15.32■□□□□ 0.04
HLA-DOA-201ENST00000229829 CFTRP13569 1480 aa15.3■□□□□ 0.04
HLA-DOA-201ENST00000229829 BIVM-ERCC5R4GMW8 1640 aa15.25■□□□□ 0.03
HLA-DOA-201ENST00000229829 PELP1Q8IZL8 1130 aaKnown RBP15.25■□□□□ 0.03
HLA-DOA-201ENST00000229829 BAZ1BQ9UIG0 1483 aaKnown RBP15.23■□□□□ 0.03
HLA-DOA-201ENST00000229829 TARBP1Q13395 1621 aaKnown RBP15.18■□□□□ 0.02
HLA-DOA-201ENST00000229829 RSF1Q96T23 1441 aaPredicted RBP15.13■□□□□ 0.01
HLA-DOA-201ENST00000229829 ABCC8Q09428 1581 aa15.1■□□□□ 0.01
HLA-DOA-201ENST00000229829 DNMBPQ6XZF7 1577 aa15.09■□□□□ 0.01
HLA-DOA-201ENST00000229829 MRC2Q9UBG0 1479 aa15.07■□□□□ 0
HLA-DOA-201ENST00000229829 ABCA5Q8WWZ7 1642 aa15.03■□□□□ -0
HLA-DOA-201ENST00000229829 TRIM26Q12899 539 aaPredicted RBP15.02■□□□□ -0
HLA-DOA-201ENST00000229829 TRIM41Q8WV44 630 aa15.01□□□□□ -0.01
HLA-DOA-201ENST00000229829 FAM9AQ8IZU1 332 aaPredicted RBP15□□□□□ -0.01
HLA-DOA-201ENST00000229829 SHROOM2Q13796 1616 aa14.97□□□□□ -0.01
HLA-DOA-201ENST00000229829 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
HLA-DOA-201ENST00000229829 CADPSQ9ULU8 1353 aa14.94□□□□□ -0.02
HLA-DOA-201ENST00000229829 PBRM1Q86U86 1689 aa14.94□□□□□ -0.02
HLA-DOA-201ENST00000229829 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
HLA-DOA-201ENST00000229829 TOP2BQ02880 1626 aa14.87□□□□□ -0.03
HLA-DOA-201ENST00000229829 CLASP1Q7Z460 1538 aa14.87□□□□□ -0.03
HLA-DOA-201ENST00000229829 URB2Q14146 1524 aaKnown RBP14.87□□□□□ -0.03
HLA-DOA-201ENST00000229829 SCAF1Q9H7N4 1312 aaKnown RBP14.86□□□□□ -0.03
HLA-DOA-201ENST00000229829 NESP48681 1621 aa14.84□□□□□ -0.03
HLA-DOA-201ENST00000229829 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
HLA-DOA-201ENST00000229829 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
HLA-DOA-201ENST00000229829 EIF4G3O43432 1585 aaKnown RBP14.8□□□□□ -0.04
HLA-DOA-201ENST00000229829 CEP164Q9UPV0 1460 aa14.8□□□□□ -0.04
HLA-DOA-201ENST00000229829 IFT140Q96RY7 1462 aa14.79□□□□□ -0.04
HLA-DOA-201ENST00000229829 SLC24A1O60721 1099 aa14.78□□□□□ -0.04
HLA-DOA-201ENST00000229829 FANCD2Q9BXW9 1451 aa14.74□□□□□ -0.05
HLA-DOA-201ENST00000229829 TOPBP1Q92547 1522 aa14.74□□□□□ -0.05
HLA-DOA-201ENST00000229829 CHD1O14646 1710 aa14.7□□□□□ -0.06
HLA-DOA-201ENST00000229829 ABCA10Q8WWZ4 1543 aa14.69□□□□□ -0.06
HLA-DOA-201ENST00000229829 MYT1Q01538 1121 aa14.68□□□□□ -0.06
HLA-DOA-201ENST00000229829 CUL7Q14999 1698 aa14.67□□□□□ -0.06
HLA-DOA-201ENST00000229829 ERICH3Q5RHP9 1530 aa14.67□□□□□ -0.06
HLA-DOA-201ENST00000229829 ZEB1P37275 1124 aaPredicted RBP14.67□□□□□ -0.06
HLA-DOA-201ENST00000229829 ADAMTS12P58397 1594 aa14.65□□□□□ -0.06
HLA-DOA-201ENST00000229829 CUX1P39880 1505 aa14.64□□□□□ -0.07
HLA-DOA-201ENST00000229829 MAGI1Q96QZ7 1491 aaPredicted RBP14.6□□□□□ -0.07
HLA-DOA-201ENST00000229829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.5□□□□□ -0.09
HLA-DOA-201ENST00000229829 RUSC2Q8N2Y8 1516 aa14.49□□□□□ -0.09
HLA-DOA-201ENST00000229829 POLA1P09884 1462 aaPredicted RBP14.49□□□□□ -0.09
HLA-DOA-201ENST00000229829 GTF3C3Q9Y5Q9 886 aa14.48□□□□□ -0.09
HLA-DOA-201ENST00000229829 TTBK1Q5TCY1 1321 aaPredicted RBP14.48□□□□□ -0.09
HLA-DOA-201ENST00000229829 SYNJ1O43426 1573 aa14.46□□□□□ -0.09
HLA-DOA-201ENST00000229829 RIMBP3CA6NJZ7 1639 aa14.43□□□□□ -0.1
HLA-DOA-201ENST00000229829 RIMBP3BA6NNM3 1639 aa14.43□□□□□ -0.1
HLA-DOA-201ENST00000229829 RIMBP3Q9UFD9 1639 aa14.43□□□□□ -0.1
HLA-DOA-201ENST00000229829 NEUROD1Q13562 356 aa14.43□□□□□ -0.1
HLA-DOA-201ENST00000229829 NUP160Q12769 1436 aa14.42□□□□□ -0.1
HLA-DOA-201ENST00000229829 CCER1Q8TC90 406 aaPredicted RBP14.41□□□□□ -0.1
HLA-DOA-201ENST00000229829 CTTNBP2Q8WZ74 1663 aa14.41□□□□□ -0.1
HLA-DOA-201ENST00000229829 SOGA1O94964 1423 aa14.4□□□□□ -0.1
HLA-DOA-201ENST00000229829 ERCC6Q03468 1493 aa14.4□□□□□ -0.1
HLA-DOA-201ENST00000229829 ACIN1Q9UKV3 1341 aaKnown RBP14.39□□□□□ -0.11
HLA-DOA-201ENST00000229829 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
HLA-DOA-201ENST00000229829 YTHDC1Q96MU7 727 aaKnown RBP14.33□□□□□ -0.12
HLA-DOA-201ENST00000229829 CENPBP07199 599 aaPredicted RBP14.32□□□□□ -0.12
HLA-DOA-201ENST00000229829 SYNJ2O15056 1496 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms