RNA–Protein interactions for RNA: ENST00000216274.9

RIPK3-201, Transcript of receptor interacting serine/threonine kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RIPK3, Length 1,930 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK3-201ENST00000216274 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
RIPK3-201ENST00000216274 CCDC180Q9P1Z9 1646 aa25.59■■□□□ 1.69
RIPK3-201ENST00000216274 ABCC9O60706 1549 aa24.85■■□□□ 1.57
RIPK3-201ENST00000216274 NACADO15069 1562 aa24.04■■□□□ 1.44
RIPK3-201ENST00000216274 RB1CC1Q8TDY2 1594 aa24.03■■□□□ 1.44
RIPK3-201ENST00000216274 ZCCHC6Q5VYS8 1495 aaKnown RBP23.97■■□□□ 1.43
RIPK3-201ENST00000216274 MYO15BQ96JP2 1530 aa23.97■■□□□ 1.43
RIPK3-201ENST00000216274 DCAF1Q9Y4B6 1507 aa23.87■■□□□ 1.41
RIPK3-201ENST00000216274 DCAF8L2P0C7V8 631 aa23.82■■□□□ 1.4
RIPK3-201ENST00000216274 UNC13AQ9UPW8 1703 aa23.46■■□□□ 1.35
RIPK3-201ENST00000216274 BICRAQ9NZM4 1560 aa23.26■■□□□ 1.31
RIPK3-201ENST00000216274 SCRIBQ14160 1630 aa23.25■■□□□ 1.31
RIPK3-201ENST00000216274 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
RIPK3-201ENST00000216274 SHROOM4Q9ULL8 1493 aa23.15■■□□□ 1.3
RIPK3-201ENST00000216274 DNAJC5BQ9UF47 199 aa22.71■■□□□ 1.23
RIPK3-201ENST00000216274 EIF4G1Q04637 1599 aaKnown RBP22.65■■□□□ 1.22
RIPK3-201ENST00000216274 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
RIPK3-201ENST00000216274 SUPT5HO00267 1087 aaKnown RBP22.37■■□□□ 1.17
RIPK3-201ENST00000216274 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
RIPK3-201ENST00000216274 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
RIPK3-201ENST00000216274 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
RIPK3-201ENST00000216274 SMARCA2P51531 1590 aa22.17■■□□□ 1.14
RIPK3-201ENST00000216274 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
RIPK3-201ENST00000216274 ATAD2BQ9ULI0 1458 aa22.15■■□□□ 1.14
RIPK3-201ENST00000216274 PEG3Q9GZU2 1588 aa22.13■■□□□ 1.13
RIPK3-201ENST00000216274 MROH2BQ7Z745 1585 aa22.11■■□□□ 1.13
RIPK3-201ENST00000216274 HMGXB3Q12766 1538 aa22.08■■□□□ 1.12
RIPK3-201ENST00000216274 BAZ1BQ9UIG0 1483 aaKnown RBP21.96■■□□□ 1.11
RIPK3-201ENST00000216274 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.09
RIPK3-201ENST00000216274 WIZO95785 1651 aa21.87■■□□□ 1.09
RIPK3-201ENST00000216274 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.06
RIPK3-201ENST00000216274 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
RIPK3-201ENST00000216274 LAMC3Q9Y6N6 1575 aa21.58■■□□□ 1.05
RIPK3-201ENST00000216274 NESP48681 1621 aa21.51■■□□□ 1.03
RIPK3-201ENST00000216274 CADPSQ9ULU8 1353 aa21.48■■□□□ 1.03
RIPK3-201ENST00000216274 ERCC6Q03468 1493 aa21.45■■□□□ 1.02
RIPK3-201ENST00000216274 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
RIPK3-201ENST00000216274 CCDC88BA6NC98 1476 aa21.39■■□□□ 1.01
RIPK3-201ENST00000216274 CFTRP13569 1480 aa21.39■■□□□ 1.01
RIPK3-201ENST00000216274 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
RIPK3-201ENST00000216274 PRDM2Q13029 1718 aa21.29■■□□□ 1
RIPK3-201ENST00000216274 CUX2O14529 1486 aa21.28■■□□□ 1
RIPK3-201ENST00000216274 THOC2Q8NI27 1593 aaKnown RBP21.25■□□□□ 0.99
RIPK3-201ENST00000216274 FANCD2Q9BXW9 1451 aa21.23■□□□□ 0.99
RIPK3-201ENST00000216274 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
RIPK3-201ENST00000216274 MRC2Q9UBG0 1479 aa21.17■□□□□ 0.98
RIPK3-201ENST00000216274 WDR62O43379 1518 aa21.13■□□□□ 0.97
RIPK3-201ENST00000216274 TRIM41Q8WV44 630 aa21.02■□□□□ 0.95
RIPK3-201ENST00000216274 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
RIPK3-201ENST00000216274 ABCC8Q09428 1581 aa20.97■□□□□ 0.95
RIPK3-201ENST00000216274 DNMBPQ6XZF7 1577 aa20.91■□□□□ 0.94
RIPK3-201ENST00000216274 TOPBP1Q92547 1522 aa20.9■□□□□ 0.94
RIPK3-201ENST00000216274 LOC105371045A0A1W2PR82 267 aa20.83■□□□□ 0.93
RIPK3-201ENST00000216274 IFT140Q96RY7 1462 aa20.78■□□□□ 0.92
RIPK3-201ENST00000216274 CUX1P39880 1505 aa20.75■□□□□ 0.91
RIPK3-201ENST00000216274 POLA1P09884 1462 aaPredicted RBP20.73■□□□□ 0.91
RIPK3-201ENST00000216274 TARBP1Q13395 1621 aaKnown RBP20.68■□□□□ 0.9
RIPK3-201ENST00000216274 FGD5Q6ZNL6 1462 aa20.67■□□□□ 0.9
RIPK3-201ENST00000216274 WRNQ14191 1432 aaPredicted RBP eCLIP20.65■□□□□ 0.9
RIPK3-201ENST00000216274 BIVM-ERCC5R4GMW8 1640 aa20.64■□□□□ 0.89
RIPK3-201ENST00000216274 TOP2BQ02880 1626 aa20.63■□□□□ 0.89
RIPK3-201ENST00000216274 FAM9AQ8IZU1 332 aaPredicted RBP20.63■□□□□ 0.89
RIPK3-201ENST00000216274 SOGA1O94964 1423 aa20.62■□□□□ 0.89
RIPK3-201ENST00000216274 WDR97A6NE52 1622 aa20.62■□□□□ 0.89
RIPK3-201ENST00000216274 ZNF608Q9ULD9 1512 aaPredicted RBP20.61■□□□□ 0.89
RIPK3-201ENST00000216274 EIF4G3O43432 1585 aaKnown RBP20.58■□□□□ 0.89
RIPK3-201ENST00000216274 RAD54L2Q9Y4B4 1467 aa20.58■□□□□ 0.89
RIPK3-201ENST00000216274 SYNJ1O43426 1573 aa20.57■□□□□ 0.88
RIPK3-201ENST00000216274 ABCA10Q8WWZ4 1543 aa20.52■□□□□ 0.87
RIPK3-201ENST00000216274 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.87
RIPK3-201ENST00000216274 DNAJC5Q9H3Z4 198 aa20.48■□□□□ 0.87
RIPK3-201ENST00000216274 TDRD9Q8NDG6 1382 aaKnown RBP20.46■□□□□ 0.87
RIPK3-201ENST00000216274 EEA1Q15075 1411 aa20.46■□□□□ 0.87
RIPK3-201ENST00000216274 ABCA5Q8WWZ7 1642 aa20.43■□□□□ 0.86
RIPK3-201ENST00000216274 GRIN2BQ13224 1484 aa20.41■□□□□ 0.86
RIPK3-201ENST00000216274 GAPVD1Q14C86 1478 aa20.4■□□□□ 0.86
RIPK3-201ENST00000216274 PCGF6Q9BYE7 350 aa20.4■□□□□ 0.86
RIPK3-201ENST00000216274 MAGI1Q96QZ7 1491 aaPredicted RBP20.38■□□□□ 0.85
RIPK3-201ENST00000216274 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
RIPK3-201ENST00000216274 SNAPC4Q5SXM2 1469 aa20.34■□□□□ 0.85
RIPK3-201ENST00000216274 OSCARQ8IYS5 282 aa20.33■□□□□ 0.85
RIPK3-201ENST00000216274 TRIM26Q12899 539 aaPredicted RBP20.31■□□□□ 0.84
RIPK3-201ENST00000216274 EHMT2Q96KQ7 1210 aa20.31■□□□□ 0.84
RIPK3-201ENST00000216274 CHD1O14646 1710 aa20.31■□□□□ 0.84
RIPK3-201ENST00000216274 ERICH3Q5RHP9 1530 aa20.29■□□□□ 0.84
RIPK3-201ENST00000216274 SYNJ2O15056 1496 aa20.27■□□□□ 0.84
RIPK3-201ENST00000216274 CSRNP3Q8WYN3 585 aa20.27■□□□□ 0.84
RIPK3-201ENST00000216274 HRCP23327 699 aa20.23■□□□□ 0.83
RIPK3-201ENST00000216274 KIF27Q86VH2 1401 aa20.23■□□□□ 0.83
RIPK3-201ENST00000216274 ADAMTS12P58397 1594 aa20.22■□□□□ 0.83
RIPK3-201ENST00000216274 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
RIPK3-201ENST00000216274 TNIKQ9UKE5 1360 aa20.21■□□□□ 0.83
RIPK3-201ENST00000216274 CHMP7Q8WUX9 453 aaPredicted RBP20.2■□□□□ 0.82
RIPK3-201ENST00000216274 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
RIPK3-201ENST00000216274 FBLN2P98095 1184 aa20.19■□□□□ 0.82
RIPK3-201ENST00000216274 GOLGA3Q08378 1498 aa20.19■□□□□ 0.82
RIPK3-201ENST00000216274 GRIN2AQ12879 1464 aa20.14■□□□□ 0.81
RIPK3-201ENST00000216274 KIF21BO75037 1637 aa20.14■□□□□ 0.81
RIPK3-201ENST00000216274 CUL7Q14999 1698 aa20.12■□□□□ 0.81
RIPK3-201ENST00000216274 CEP162Q5TB80 1403 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms