RNA–Protein interactions for RNA: ENST00000216211.8

UPK3A-201, Transcript of uroplakin 3A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene UPK3A, Length 1,051 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-201ENST00000216211 NISCHQ9Y2I1 1504 aa37.5■■■■□ 3.59
UPK3A-201ENST00000216211 CCDC180Q9P1Z9 1646 aa33.65■■■□□ 2.98
UPK3A-201ENST00000216211 ABCC9O60706 1549 aa33.5■■■□□ 2.95
UPK3A-201ENST00000216211 RB1CC1Q8TDY2 1594 aa31.94■■■□□ 2.7
UPK3A-201ENST00000216211 NACADO15069 1562 aa31.73■■■□□ 2.67
UPK3A-201ENST00000216211 DCAF8L2P0C7V8 631 aa31.59■■■□□ 2.65
UPK3A-201ENST00000216211 UNC13AQ9UPW8 1703 aa31.35■■■□□ 2.61
UPK3A-201ENST00000216211 MYO15BQ96JP2 1530 aa31.29■■■□□ 2.6
UPK3A-201ENST00000216211 DNAJC5BQ9UF47 199 aa31.29■■■□□ 2.6
UPK3A-201ENST00000216211 PABPN1Q86U42 306 aaKnown RBP eCLIP31.18■■■□□ 2.58
UPK3A-201ENST00000216211 ZCCHC6Q5VYS8 1495 aaKnown RBP31.1■■■□□ 2.57
UPK3A-201ENST00000216211 BICRAQ9NZM4 1560 aa31.03■■■□□ 2.56
UPK3A-201ENST00000216211 DCAF1Q9Y4B6 1507 aa30.96■■■□□ 2.55
UPK3A-201ENST00000216211 SCRIBQ14160 1630 aa30.69■■■□□ 2.5
UPK3A-201ENST00000216211 SHROOM4Q9ULL8 1493 aa30.55■■■□□ 2.48
UPK3A-201ENST00000216211 CC2D2AQ9P2K1 1620 aa30.3■■■□□ 2.44
UPK3A-201ENST00000216211 EIF4G1Q04637 1599 aaKnown RBP30.24■■■□□ 2.43
UPK3A-201ENST00000216211 CECR2Q9BXF3 1484 aa30.15■■■□□ 2.42
UPK3A-201ENST00000216211 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
UPK3A-201ENST00000216211 NCAPD3P42695 1498 aa29.26■■■□□ 2.27
UPK3A-201ENST00000216211 ATAD2BQ9ULI0 1458 aa29.21■■■□□ 2.27
UPK3A-201ENST00000216211 SMARCA2P51531 1590 aa29.15■■■□□ 2.26
UPK3A-201ENST00000216211 BAZ1AQ9NRL2 1556 aaPredicted RBP29.1■■■□□ 2.25
UPK3A-201ENST00000216211 HMGXB3Q12766 1538 aa29.1■■■□□ 2.25
UPK3A-201ENST00000216211 BAZ1BQ9UIG0 1483 aaKnown RBP28.95■■■□□ 2.22
UPK3A-201ENST00000216211 PEG3Q9GZU2 1588 aa28.94■■■□□ 2.22
UPK3A-201ENST00000216211 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
UPK3A-201ENST00000216211 ERCC6Q03468 1493 aa28.91■■■□□ 2.22
UPK3A-201ENST00000216211 NESP48681 1621 aa28.83■■■□□ 2.21
UPK3A-201ENST00000216211 CUX2O14529 1486 aa28.8■■■□□ 2.2
UPK3A-201ENST00000216211 LAMC3Q9Y6N6 1575 aa28.63■■■□□ 2.17
UPK3A-201ENST00000216211 WIZO95785 1651 aa28.63■■■□□ 2.17
UPK3A-201ENST00000216211 DNAJC5Q9H3Z4 198 aa28.62■■■□□ 2.17
UPK3A-201ENST00000216211 KIF21AQ7Z4S6 1674 aa28.54■■■□□ 2.16
UPK3A-201ENST00000216211 THOC2Q8NI27 1593 aaKnown RBP28.54■■■□□ 2.16
UPK3A-201ENST00000216211 PDS5BQ9NTI5 1447 aa28.43■■■□□ 2.14
UPK3A-201ENST00000216211 CADPSQ9ULU8 1353 aa28.37■■■□□ 2.13
UPK3A-201ENST00000216211 RSF1Q96T23 1441 aaPredicted RBP28.32■■■□□ 2.12
UPK3A-201ENST00000216211 TOP2AP11388 1531 aaKnown RBP28.22■■■□□ 2.11
UPK3A-201ENST00000216211 MRC2Q9UBG0 1479 aa28.19■■■□□ 2.1
UPK3A-201ENST00000216211 WDR62O43379 1518 aa28.13■■■□□ 2.09
UPK3A-201ENST00000216211 CEP164Q9UPV0 1460 aa28.11■■■□□ 2.09
UPK3A-201ENST00000216211 CFTRP13569 1480 aa28.09■■■□□ 2.09
UPK3A-201ENST00000216211 FANCD2Q9BXW9 1451 aa28.08■■■□□ 2.09
UPK3A-201ENST00000216211 PRDM2Q13029 1718 aa27.97■■■□□ 2.07
UPK3A-201ENST00000216211 CCDC88BA6NC98 1476 aa27.89■■■□□ 2.05
UPK3A-201ENST00000216211 URB2Q14146 1524 aaKnown RBP27.87■■■□□ 2.05
UPK3A-201ENST00000216211 TOPBP1Q92547 1522 aa27.58■■■□□ 2.01
UPK3A-201ENST00000216211 IFT140Q96RY7 1462 aa27.52■■■□□ 2
UPK3A-201ENST00000216211 DNMBPQ6XZF7 1577 aa27.51■■□□□ 1.99
UPK3A-201ENST00000216211 ZNF608Q9ULD9 1512 aaPredicted RBP27.51■■□□□ 1.99
UPK3A-201ENST00000216211 ABCC8Q09428 1581 aa27.49■■□□□ 1.99
UPK3A-201ENST00000216211 OSCARQ8IYS5 282 aa27.47■■□□□ 1.99
UPK3A-201ENST00000216211 TRIM41Q8WV44 630 aa27.45■■□□□ 1.98
UPK3A-201ENST00000216211 EIF4G3O43432 1585 aaKnown RBP27.39■■□□□ 1.98
UPK3A-201ENST00000216211 TARBP1Q13395 1621 aaKnown RBP27.35■■□□□ 1.97
UPK3A-201ENST00000216211 POLA1P09884 1462 aaPredicted RBP27.3■■□□□ 1.96
UPK3A-201ENST00000216211 AQRO60306 1485 aaKnown RBP eCLIP27.25■■□□□ 1.95
UPK3A-201ENST00000216211 CHD1O14646 1710 aa27.22■■□□□ 1.95
UPK3A-201ENST00000216211 RAD54L2Q9Y4B4 1467 aa27.21■■□□□ 1.95
UPK3A-201ENST00000216211 RIMBP3CA6NJZ7 1639 aa27.21■■□□□ 1.95
UPK3A-201ENST00000216211 RIMBP3BA6NNM3 1639 aa27.21■■□□□ 1.95
UPK3A-201ENST00000216211 RIMBP3Q9UFD9 1639 aa27.21■■□□□ 1.95
UPK3A-201ENST00000216211 SUPT5HO00267 1087 aaKnown RBP27.17■■□□□ 1.94
UPK3A-201ENST00000216211 CUX1P39880 1505 aa27.16■■□□□ 1.94
UPK3A-201ENST00000216211 SOGA1O94964 1423 aa27.16■■□□□ 1.94
UPK3A-201ENST00000216211 FGD5Q6ZNL6 1462 aa27.15■■□□□ 1.94
UPK3A-201ENST00000216211 TDRD9Q8NDG6 1382 aaKnown RBP27.09■■□□□ 1.93
UPK3A-201ENST00000216211 ARHGEF11O15085 1522 aa27.09■■□□□ 1.93
UPK3A-201ENST00000216211 WDR97A6NE52 1622 aa27.06■■□□□ 1.92
UPK3A-201ENST00000216211 FBLN2P98095 1184 aa27.05■■□□□ 1.92
UPK3A-201ENST00000216211 SNAPC4Q5SXM2 1469 aa27■■□□□ 1.91
UPK3A-201ENST00000216211 PBRM1Q86U86 1689 aa26.93■■□□□ 1.9
UPK3A-201ENST00000216211 GRIN2BQ13224 1484 aa26.91■■□□□ 1.9
UPK3A-201ENST00000216211 MAGI1Q96QZ7 1491 aaPredicted RBP26.9■■□□□ 1.9
UPK3A-201ENST00000216211 CYB5RLQ6IPT4 315 aa26.84■■□□□ 1.89
UPK3A-201ENST00000216211 CHMP7Q8WUX9 453 aaPredicted RBP26.84■■□□□ 1.89
UPK3A-201ENST00000216211 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
UPK3A-201ENST00000216211 CLASP1Q7Z460 1538 aa26.84■■□□□ 1.89
UPK3A-201ENST00000216211 ABCA10Q8WWZ4 1543 aa26.84■■□□□ 1.89
UPK3A-201ENST00000216211 ABCA5Q8WWZ7 1642 aa26.83■■□□□ 1.89
UPK3A-201ENST00000216211 ARAP1Q96P48 1450 aa26.83■■□□□ 1.89
UPK3A-201ENST00000216211 SYNJ1O43426 1573 aa26.83■■□□□ 1.89
UPK3A-201ENST00000216211 SYNJ2O15056 1496 aa26.81■■□□□ 1.88
UPK3A-201ENST00000216211 BIVM-ERCC5R4GMW8 1640 aa26.79■■□□□ 1.88
UPK3A-201ENST00000216211 TOP2BQ02880 1626 aa26.77■■□□□ 1.88
UPK3A-201ENST00000216211 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.87
UPK3A-201ENST00000216211 ADAMTS12P58397 1594 aa26.62■■□□□ 1.85
UPK3A-201ENST00000216211 GRIN2AQ12879 1464 aa26.58■■□□□ 1.85
UPK3A-201ENST00000216211 TRHP20396 242 aaPredicted RBP26.52■■□□□ 1.84
UPK3A-201ENST00000216211 CEP170Q5SW79 1584 aa26.52■■□□□ 1.84
UPK3A-201ENST00000216211 ERICH3Q5RHP9 1530 aa26.51■■□□□ 1.83
UPK3A-201ENST00000216211 FHAD1B1AJZ9 1412 aa26.49■■□□□ 1.83
UPK3A-201ENST00000216211 NUP160Q12769 1436 aa26.47■■□□□ 1.83
UPK3A-201ENST00000216211 ERCC6L2Q5T890 1561 aa26.46■■□□□ 1.83
UPK3A-201ENST00000216211 SHROOM2Q13796 1616 aa26.39■■□□□ 1.82
UPK3A-201ENST00000216211 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
UPK3A-201ENST00000216211 PRG4Q92954 1404 aaPredicted RBP26.21■■□□□ 1.79
UPK3A-201ENST00000216211 CUL7Q14999 1698 aa26.19■■□□□ 1.78
UPK3A-201ENST00000216211 KIF27Q86VH2 1401 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms