RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	TOA1	P32773	286 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	SPT23	P35210	1082 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	YKT6	P36015	200 aa	Known RBP	4.54	□□□□□ -1.68
PTA1	YAL043C	CEP3	P40969	608 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	CAF130	P53280	1122 aa	Predicted RBP	4.54	□□□□□ -1.68
PTA1	YAL043C	RPT4	P53549	437 aa	Known RBP	4.54	□□□□□ -1.68
PTA1	YAL043C	NMA111	P53920	997 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	RIT1	P23796	513 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	PRO3	P32263	286 aa	Known RBP	4.54	□□□□□ -1.68
PTA1	YAL043C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
PTA1	YAL043C	PTK1	P36002	662 aa	Predicted RBP	4.54	□□□□□ -1.68
PTA1	YAL043C	LYS14	P40971	790 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	YJL181W	P46987	611 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	YGR237C	P50089	785 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	YGL140C	P53120	1219 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	YGR130C	P53278	816 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	LAM6	Q08001	693 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	GET3	Q12154	354 aa	Known RBP	4.54	□□□□□ -1.68
PTA1	YAL043C	NYV1	Q12255	253 aa		4.54	□□□□□ -1.68
PTA1	YAL043C	RPP1B	P10622	106 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	UBC1	P21734	215 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	FRD1	P32614	470 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	SAP190	P36123	1033 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	ADE17	P38009	592 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	ATG3	P40344	310 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	KAR5	Q04746	504 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	GFD1	Q04839	188 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	TOS4	Q06266	489 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	CDC73	Q06697	393 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	RIX7	Q07844	837 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	CWC2	Q12046	339 aa	Predicted RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	SSF2	Q12153	453 aa	Predicted RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	PTC5	Q12511	572 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	NBL1	Q3E7Y6	73 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	PGI1	P12709	554 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	GLO3	P38682	493 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	OSH3	P38713	996 aa	Known RBP	4.53	□□□□□ -1.68
PTA1	YAL043C	NDC80	P40460	691 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	PCI8	P40512	444 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	ECM23	Q02710	187 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	UME1	Q03010	460 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	YDR090C	Q03193	310 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	YCG1	Q06680	1035 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	HAT1	Q12341	374 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	NHA1	Q99271	985 aa		4.53	□□□□□ -1.68
PTA1	YAL043C	JIP3	O13555	125 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	QCR6	P00127	147 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	MRC1	P25588	1096 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	CRG1	P38892	291 aa	RIP-Chip data	4.52	□□□□□ -1.69	not detected
PTA1	YAL043C	CIN4	P39110	191 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	DMA2	P53924	522 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	IRC4	Q03036	179 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	TRS120	Q04183	1289 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	MMR1	Q06324	491 aa		4.52	□□□□□ -1.69
PTA1	YAL043C	NOP14	Q99207	810 aa	Known RBP	4.52	□□□□□ -1.69
PTA1	YAL043C	HIS4	P00815	799 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	MET6	P05694	767 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	MTF2	P10849	440 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	SPO12	P17123	173 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	ANP1	P32629	500 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	ECM32	P32644	1121 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	VRP1	P37370	817 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	VPS41	P38959	992 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	TFG2	P41896	400 aa	Predicted RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	FYV8	P46949	817 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	BNI4	P53858	892 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	TLG1	Q03322	224 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	PRP42	Q03776	544 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	YLR287C	Q05881	355 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	SPP382	Q06411	708 aa	Predicted RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	SDH5	Q08230	162 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	ISU2	Q12056	156 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	POM152	P39685	1337 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	PAP1	P29468	568 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	RPS0A	P32905	252 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	SIP3	P38717	1229 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	YHL050C	P38721	697 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	SPL2	P38839	148 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	NSG2	P53898	299 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	RPS15	Q01855	142 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	YMR102C	Q03177	834 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	EBS1	Q03466	884 aa	Known RBP	4.51	□□□□□ -1.69
PTA1	YAL043C	SAS4	Q04003	481 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	SPO75	Q07798	868 aa		4.51	□□□□□ -1.69
PTA1	YAL043C	SSA1	P10591	642 aa	Known RBP	4.5	□□□□□ -1.69
PTA1	YAL043C	SPT16	P32558	1035 aa	Known RBP	4.5	□□□□□ -1.69
PTA1	YAL043C	XRS2	P33301	854 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	BOI1	P38041	980 aa	Known RBP	4.5	□□□□□ -1.69
PTA1	YAL043C	RGD1	P38339	666 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	ORC6	P38826	435 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	SMF1	P38925	575 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	PTC2	P39966	464 aa	Known RBP	4.5	□□□□□ -1.69
PTA1	YAL043C	VID27	P40157	782 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	SMC3	P47037	1230 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	SDA1	P53313	767 aa	Known RBP	4.5	□□□□□ -1.69
PTA1	YAL043C	SUB1	P54000	292 aa	Known RBP	4.5	□□□□□ -1.69
PTA1	YAL043C	HPC2	Q01448	625 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	VPS38	Q05919	439 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	ATG23	Q06671	453 aa		4.5	□□□□□ -1.69
PTA1	YAL043C	ADR1	P07248	1323 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 79.3 ms