Protein–RNA interactions for Protein: P54000

SUB1, RNA polymerase II transcriptional coactivator SUB1, yeastyeast

Known RBP Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SUB1P54000 NSR1YGR159C 1245 nt20.14■□□□□ 0.81
SUB1P54000 YML009W-BYML009W-B 477 nt19.78■□□□□ 0.76
SUB1P54000 NOP1YDL014W 984 nt18.93■□□□□ 0.62
SUB1P54000 MDJ1YFL016C 1536 nt18.52■□□□□ 0.56
SUB1P54000 YJL027CYJL027C 417 nt16.99■□□□□ 0.31
SUB1P54000 YKL036CYKL036C 393 nt16.93■□□□□ 0.3
SUB1P54000 SRX1YKL086W 384 nt16.55■□□□□ 0.24
SUB1P54000 Q0297Q0297 156 nt16.38■□□□□ 0.21
SUB1P54000 DBP2YNL112W 1641 nt16.12■□□□□ 0.17
SUB1P54000 Q0182Q0182 405 nt15.94■□□□□ 0.14
SUB1P54000 YBR190WYBR190W 312 nt15.88■□□□□ 0.13
SUB1P54000 YCR051WYCR051W 669 nt15.7■□□□□ 0.1
SUB1P54000 RTC3YHR087W 336 nt15.54■□□□□ 0.08
SUB1P54000 SSA3YBL075C 1950 nt15.4■□□□□ 0.06
SUB1P54000 TRN1tP(UGG)A 72 nt15.33■□□□□ 0.04
SUB1P54000 SUF9tP(UGG)F 72 nt15.33■□□□□ 0.04
SUB1P54000 SUF8tP(UGG)H 72 nt15.33■□□□□ 0.04
SUB1P54000 tP(UGG)LtP(UGG)L 72 nt15.33■□□□□ 0.04
SUB1P54000 SUF7tP(UGG)M 72 nt15.33■□□□□ 0.04
SUB1P54000 tP(UGG)N1tP(UGG)N1 72 nt15.33■□□□□ 0.04
SUB1P54000 tP(UGG)N2tP(UGG)N2 72 nt15.33■□□□□ 0.04
SUB1P54000 tP(UGG)O1tP(UGG)O1 72 nt15.33■□□□□ 0.04
SUB1P54000 SUF11tP(UGG)O2 72 nt15.33■□□□□ 0.04
SUB1P54000 CCC1YLR220W 969 nt15.23■□□□□ 0.03
SUB1P54000 SCS3YGL126W 1143 nt15.11■□□□□ 0.01
SUB1P54000 RVS167YDR388W 1449 nt14.97□□□□□ -0.01
SUB1P54000 PUT4YOR348C 1884 nt14.92□□□□□ -0.02
SUB1P54000 MOT3YMR070W 1473 nt14.87□□□□□ -0.03
SUB1P54000 SCJ1YMR214W 1134 nt14.83□□□□□ -0.04
SUB1P54000 RPP1BYDL130W 321 nt14.71□□□□□ -0.05
SUB1P54000 YOL085CYOL085C 342 nt14.71□□□□□ -0.05
SUB1P54000 PKP1YIL042C 1185 nt14.61□□□□□ -0.07
SUB1P54000 SSA1YAL005C 1929 nt14.54□□□□□ -0.08
SUB1P54000 ARE1YCR048W 1833 nt14.47□□□□□ -0.09
SUB1P54000 POA1YBR022W 534 nt14.44□□□□□ -0.1
SUB1P54000 tP(UGG)O3tP(UGG)O3 72 nt14.33□□□□□ -0.12
SUB1P54000 SAH1YER043C 1350 nt14.33□□□□□ -0.12
SUB1P54000 URN1YPR152C 1398 nt14.33□□□□□ -0.12
SUB1P54000 SHR5YOL110W 714 nt14.32□□□□□ -0.12
SUB1P54000 YHR049C-AYHR049C-A 297 nt14.29□□□□□ -0.12
SUB1P54000 BSC6YOL137W 1494 nt14.23□□□□□ -0.13
SUB1P54000 OPI9YLR338W 858 nt14.21□□□□□ -0.13
SUB1P54000 DEP1YAL013W 1218 nt14.19□□□□□ -0.14
SUB1P54000 PET122YER153C 765 nt14.16□□□□□ -0.14
SUB1P54000 FPS1YLL043W 2010 nt14.03□□□□□ -0.16
SUB1P54000 SPT5YML010W 3192 nt13.98□□□□□ -0.17
SUB1P54000 BUD23YCR047C 828 nt13.93□□□□□ -0.18
SUB1P54000 RPN10YHR200W 807 nt13.91□□□□□ -0.18
SUB1P54000 YDJ1YNL064C 1230 nt13.83□□□□□ -0.2
SUB1P54000 YNL208WYNL208W 600 nt13.83□□□□□ -0.2
SUB1P54000 SCR1SCR1 522 nt13.79□□□□□ -0.2
SUB1P54000 SSA4YER103W 1929 nt13.79□□□□□ -0.2
SUB1P54000 PUN1YLR414C 792 nt13.78□□□□□ -0.2
SUB1P54000 PTC2YER089C 1395 nt13.77□□□□□ -0.21
SUB1P54000 RRN5YLR141W 1092 nt13.7□□□□□ -0.22
SUB1P54000 GAR1YHR089C 618 nt13.68□□□□□ -0.22
SUB1P54000 NAB2YGL122C 1578 nt13.62□□□□□ -0.23
SUB1P54000 NVJ2YPR091C 2313 nt13.62□□□□□ -0.23
SUB1P54000 YJR018WYJR018W 363 nt13.61□□□□□ -0.23
SUB1P54000 YER088W-BYER088W-B 147 nt13.42□□□□□ -0.26
SUB1P54000 FIS1YIL065C 468 nt13.4□□□□□ -0.26
SUB1P54000 MEP2YNL142W 1500 nt13.39□□□□□ -0.27
SUB1P54000 ATS1YAL020C 1002 nt13.35□□□□□ -0.27
SUB1P54000 FPR4YLR449W 1179 nt13.35□□□□□ -0.27
SUB1P54000 DAL1YIR027C 1383 nt13.34□□□□□ -0.27
SUB1P54000 YJR120WYJR120W 351 nt13.31□□□□□ -0.28
SUB1P54000 BDF1YLR399C 2061 nt13.31□□□□□ -0.28
SUB1P54000 PAC11YDR488C 1602 nt13.28□□□□□ -0.28
SUB1P54000 PHO4YFR034C 939 nt13.23□□□□□ -0.29
SUB1P54000 RPM1RPM1 483 nt13.23□□□□□ -0.29
SUB1P54000 RSB1YOR049C 1065 nt13.23□□□□□ -0.29
SUB1P54000 DCW1YKL046C 1350 nt13.21□□□□□ -0.29
SUB1P54000 TIR1YER011W 765 nt13.21□□□□□ -0.29
SUB1P54000 INM2YDR287W 879 nt13.18□□□□□ -0.3
SUB1P54000 YPS1YLR120C 1710 nt13.17□□□□□ -0.3
SUB1P54000 RPP2BYDR382W 333 nt13.15□□□□□ -0.3
SUB1P54000 TAT1YBR069C 1860 nt13.11□□□□□ -0.31
SUB1P54000 YHR165W-AYHR165W-A 312 nt13.09□□□□□ -0.31
SUB1P54000 YDR095CYDR095C 411 nt13□□□□□ -0.33
SUB1P54000 EMI2YDR516C 1503 nt12.99□□□□□ -0.33
SUB1P54000 YBL100CYBL100C 315 nt12.98□□□□□ -0.33
SUB1P54000 YBR220CYBR220C 1683 nt12.96□□□□□ -0.34
SUB1P54000 SRB2YHR041C 633 nt12.93□□□□□ -0.34
SUB1P54000 YMR090WYMR090W 684 nt12.9□□□□□ -0.34
SUB1P54000 YDL221WYDL221W 552 nt12.84□□□□□ -0.35
SUB1P54000 CAC2YML102W 1407 nt12.83□□□□□ -0.36
SUB1P54000 FUN26YAL022C 1554 nt12.81□□□□□ -0.36
SUB1P54000 PTP1YDL230W 1008 nt12.8□□□□□ -0.36
SUB1P54000 BDH2YAL061W 1254 nt12.79□□□□□ -0.36
SUB1P54000 SDH1YKL148C 1923 nt12.79□□□□□ -0.36
SUB1P54000 RPP2AYOL039W 321 nt12.76□□□□□ -0.37
SUB1P54000 ALF1YNL148C 765 nt12.75□□□□□ -0.37
SUB1P54000 TRM9YML014W 840 nt12.67□□□□□ -0.38
SUB1P54000 FRE6YLL051C 2139 nt12.65□□□□□ -0.38
SUB1P54000 SCC4YER147C 1875 nt12.63□□□□□ -0.39
SUB1P54000 IRC15YPL017C 1500 nt12.62□□□□□ -0.39
SUB1P54000 PCH2YBR186W 1695 nt12.58□□□□□ -0.4
SUB1P54000 SIS1YNL007C 1059 nt12.57□□□□□ -0.4
SUB1P54000 GIS3YLR094C 1509 nt12.57□□□□□ -0.4
SUB1P54000 WWM1YFL010C 636 nt12.56□□□□□ -0.4
Retrieved 100 of 7,029 protein–RNA pairs in 17.5 ms