RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W MET22P32179 357 aa7.44□□□□□ -1.22
CAF40YNL288W FRD1P32614 470 aaKnown RBP7.44□□□□□ -1.22
CAF40YNL288W RPL34BP40525 121 aaKnown RBP7.44□□□□□ -1.22
CAF40YNL288W DPH6Q12429 685 aa7.44□□□□□ -1.22
CAF40YNL288W ENO2P00925 437 aaKnown RBP7.43□□□□□ -1.22
CAF40YNL288W ARG82P07250 355 aa7.43□□□□□ -1.22
CAF40YNL288W FBP26P32604 452 aa7.43□□□□□ -1.22
CAF40YNL288W YNG2P38806 282 aaKnown RBP7.43□□□□□ -1.22
CAF40YNL288W ATG32P40458 529 aa7.43□□□□□ -1.22
CAF40YNL288W UBX2Q04228 584 aa7.43□□□□□ -1.22
CAF40YNL288W DFG5Q05031 458 aa7.43□□□□□ -1.22
CAF40YNL288W CAF20P12962 161 aaKnown RBP7.42□□□□□ -1.22
CAF40YNL288W GAR1P28007 205 aaKnown RBP7.42□□□□□ -1.22
CAF40YNL288W GCD7P32502 381 aaPredicted RBP7.42□□□□□ -1.22
CAF40YNL288W SPO1P53541 631 aa7.42□□□□□ -1.22
CAF40YNL288W YKU70P32807 602 aa7.41□□□□□ -1.22
CAF40YNL288W SSF1P38789 453 aaPredicted RBP7.41□□□□□ -1.22
CAF40YNL288W SHC1P39000 512 aa7.41□□□□□ -1.22
CAF40YNL288W FUN12P39730 1002 aaKnown RBP7.41□□□□□ -1.22
CAF40YNL288W ICP55P40051 511 aa7.41□□□□□ -1.22
CAF40YNL288W ATG3P40344 310 aa7.41□□□□□ -1.22
CAF40YNL288W SQS1P53866 767 aaKnown RBP7.41□□□□□ -1.22
CAF40YNL288W YDR444WQ04093 687 aa7.41□□□□□ -1.22
CAF40YNL288W BDS1Q08347 646 aa7.41□□□□□ -1.22
CAF40YNL288W SNU66Q12420 587 aaPredicted RBP7.41□□□□□ -1.22
CAF40YNL288W TIF1P10081 395 aaKnown RBP7.4□□□□□ -1.22
CAF40YNL288W GBP2P25555 427 aaKnown RBP RIP-Chip data7.4□□□□□ -1.22not detected
CAF40YNL288W ICL1P28240 557 aaPredicted RBP7.4□□□□□ -1.22
CAF40YNL288W AAD14P42884 376 aa7.4□□□□□ -1.22
CAF40YNL288W NUP85P46673 744 aa7.4□□□□□ -1.22
CAF40YNL288W POL32P47110 350 aa7.4□□□□□ -1.22
CAF40YNL288W PUF6Q04373 656 aaKnown RBP7.4□□□□□ -1.22
CAF40YNL288W YLR346CQ06139 101 aa7.4□□□□□ -1.22
CAF40YNL288W ADR1P07248 1323 aa7.39□□□□□ -1.23
CAF40YNL288W TOP1P04786 769 aa7.39□□□□□ -1.23
CAF40YNL288W KRE2P27809 442 aa7.39□□□□□ -1.23
CAF40YNL288W RTG2P32608 588 aaKnown RBP7.39□□□□□ -1.23
CAF40YNL288W ISU1Q03020 165 aa7.39□□□□□ -1.23
CAF40YNL288W THI3Q07471 609 aa7.39□□□□□ -1.23
CAF40YNL288W FIG2P25653 1609 aa7.38□□□□□ -1.23
CAF40YNL288W POM152P39685 1337 aa7.38□□□□□ -1.23
CAF40YNL288W RET1P22276 1149 aaKnown RBP7.38□□□□□ -1.23
CAF40YNL288W MGM1P32266 881 aa7.38□□□□□ -1.23
CAF40YNL288W NGR1P32831 672 aaKnown RBP7.38□□□□□ -1.23
CAF40YNL288W NUG1P40010 520 aaKnown RBP7.38□□□□□ -1.23
CAF40YNL288W APL6P46682 809 aa7.38□□□□□ -1.23
CAF40YNL288W RIM21P48565 533 aa7.38□□□□□ -1.23
CAF40YNL288W ISR1Q06098 443 aaKnown RBP7.38□□□□□ -1.23
CAF40YNL288W LCB5Q06147 687 aaKnown RBP7.38□□□□□ -1.23
CAF40YNL288W HKR1P41809 1802 aa7.37□□□□□ -1.23
CAF40YNL288W RPP2BP02400 110 aaKnown RBP7.37□□□□□ -1.23
CAF40YNL288W STE6P12866 1290 aa7.37□□□□□ -1.23
CAF40YNL288W FPR3P38911 411 aaKnown RBP7.37□□□□□ -1.23
CAF40YNL288W NCB2Q92317 146 aa7.37□□□□□ -1.23
CAF40YNL288W SOH1P38633 127 aa7.36□□□□□ -1.23
CAF40YNL288W SPL2P38839 148 aa7.36□□□□□ -1.23
CAF40YNL288W LSC2P53312 427 aa7.36□□□□□ -1.23
CAF40YNL288W RPT4P53549 437 aaKnown RBP7.36□□□□□ -1.23
CAF40YNL288W PSF3Q12146 194 aa7.36□□□□□ -1.23
CAF40YNL288W NMD2P38798 1089 aaKnown RBP7.35□□□□□ -1.23
CAF40YNL288W OPT2Q06593 877 aa7.35□□□□□ -1.23
CAF40YNL288W MSM1P22438 575 aa7.34□□□□□ -1.23
CAF40YNL288W DLD1P32891 587 aa7.34□□□□□ -1.23
CAF40YNL288W UTP13Q05946 817 aaKnown RBP7.34□□□□□ -1.23
CAF40YNL288W FAS2P19097 1887 aaKnown RBP7.33□□□□□ -1.24
CAF40YNL288W ENO1P00924 437 aaKnown RBP7.33□□□□□ -1.24
CAF40YNL288W PIF1P07271 859 aa7.33□□□□□ -1.24
CAF40YNL288W SEC18P18759 758 aaKnown RBP7.33□□□□□ -1.24
CAF40YNL288W IRC4Q03036 179 aa7.33□□□□□ -1.24
CAF40YNL288W ECM16Q04217 1267 aaKnown RBP7.33□□□□□ -1.24
CAF40YNL288W RRG1Q12167 365 aaPredicted RBP7.33□□□□□ -1.24
CAF40YNL288W DUR1,2P32528 1835 aaKnown RBP7.32□□□□□ -1.24
CAF40YNL288W MIP1P15801 1254 aa7.32□□□□□ -1.24
CAF40YNL288W DLD3P39976 496 aaKnown RBP7.32□□□□□ -1.24
CAF40YNL288W CRF1Q04930 467 aa7.32□□□□□ -1.24
CAF40YNL288W RRI2Q12348 645 aa7.32□□□□□ -1.24
CAF40YNL288W DAT1P13483 248 aaKnown RBP7.31□□□□□ -1.24
CAF40YNL288W LCB1P25045 558 aaKnown RBP7.31□□□□□ -1.24
CAF40YNL288W UTR2P32623 467 aa7.31□□□□□ -1.24
CAF40YNL288W SLA1P32790 1244 aa7.31□□□□□ -1.24
CAF40YNL288W HAL5P38970 855 aaKnown RBP7.31□□□□□ -1.24
CAF40YNL288W JJJ2P46997 583 aa7.31□□□□□ -1.24
CAF40YNL288W YJR098CP47139 656 aa7.31□□□□□ -1.24
CAF40YNL288W TIM50Q02776 476 aa7.31□□□□□ -1.24
CAF40YNL288W PRP42Q03776 544 aaKnown RBP7.31□□□□□ -1.24
CAF40YNL288W MRX10Q05648 414 aa7.31□□□□□ -1.24
CAF40YNL288W PDR18P53756 1333 aa7.3□□□□□ -1.24
CAF40YNL288W YLR278CQ05854 1341 aa7.3□□□□□ -1.24
CAF40YNL288W GLO3P38682 493 aaKnown RBP7.3□□□□□ -1.24
CAF40YNL288W YGL242CP53066 181 aa7.3□□□□□ -1.24
CAF40YNL288W MLC1P53141 149 aa7.3□□□□□ -1.24
CAF40YNL288W UBP2Q01476 1272 aa7.3□□□□□ -1.24
CAF40YNL288W GAS5Q08193 484 aa7.3□□□□□ -1.24
CAF40YNL288W THS1P04801 734 aaKnown RBP7.29□□□□□ -1.24
CAF40YNL288W SPT2P06843 333 aaPredicted RBP7.29□□□□□ -1.24
CAF40YNL288W RDS2P19541 446 aaKnown RBP7.29□□□□□ -1.24
CAF40YNL288W AFG2P32794 780 aa7.29□□□□□ -1.24
CAF40YNL288W GLY1P37303 387 aaKnown RBP7.29□□□□□ -1.24
CAF40YNL288W TBS1P38114 1094 aa7.29□□□□□ -1.24
CAF40YNL288W SCW11P53189 542 aa7.29□□□□□ -1.24
Retrieved 100 of 5,963 RNA–protein pairs in 32.2 ms