RNA–Protein interactions for RNA: YBL006C

LDB7, Transcript of Component of the RSC chromatin remodeling complex, yeastyeast

Gene LDB7, Length 543 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LDB7YBL006C KTR1P27810 393 aaKnown RBP8.15□□□□□ -1.1
LDB7YBL006C FPR3P38911 411 aaKnown RBP8.15□□□□□ -1.1
LDB7YBL006C AFG3P39925 761 aa8.15□□□□□ -1.1
LDB7YBL006C DUS4Q06063 367 aa8.15□□□□□ -1.1
LDB7YBL006C MRD1Q06106 887 aaKnown RBP8.15□□□□□ -1.1
LDB7YBL006C MET7Q08645 548 aa8.15□□□□□ -1.1
LDB7YBL006C SUT2Q12286 268 aa8.15□□□□□ -1.1
LDB7YBL006C SAM2P19358 384 aaKnown RBP8.14□□□□□ -1.11
LDB7YBL006C PRO3P32263 286 aaKnown RBP8.14□□□□□ -1.11
LDB7YBL006C SLN1P39928 1220 aaPredicted RBP8.14□□□□□ -1.11
LDB7YBL006C AIM21P40563 679 aa8.14□□□□□ -1.11
LDB7YBL006C SOL4P53315 255 aa8.14□□□□□ -1.11
LDB7YBL006C ALD6P54115 500 aaKnown RBP8.14□□□□□ -1.11
LDB7YBL006C OPI1P21957 404 aa8.13□□□□□ -1.11
LDB7YBL006C UTR4P32626 227 aa8.13□□□□□ -1.11
LDB7YBL006C BCS1P32839 456 aa8.13□□□□□ -1.11
LDB7YBL006C RGT1P32862 1170 aa8.13□□□□□ -1.11
LDB7YBL006C UIP5P36137 443 aa8.13□□□□□ -1.11
LDB7YBL006C RRP8P38961 392 aaKnown RBP8.13□□□□□ -1.11
LDB7YBL006C FIR1P40020 876 aa8.13□□□□□ -1.11
LDB7YBL006C MDM20Q12387 796 aaKnown RBP8.13□□□□□ -1.11
LDB7YBL006C RAD18P10862 487 aa8.12□□□□□ -1.11
LDB7YBL006C MET1P36150 593 aa8.12□□□□□ -1.11
LDB7YBL006C PHO88P38264 188 aaPredicted RBP8.12□□□□□ -1.11
LDB7YBL006C VPS8P39702 1274 aa8.12□□□□□ -1.11
LDB7YBL006C YAF9P53930 226 aa8.12□□□□□ -1.11
LDB7YBL006C UFD2P54860 961 aa8.12□□□□□ -1.11
LDB7YBL006C MYO3P36006 1272 aa8.11□□□□□ -1.11
LDB7YBL006C RFC1P38630 861 aaKnown RBP8.11□□□□□ -1.11
LDB7YBL006C STM1P39015 273 aaKnown RBP8.11□□□□□ -1.11
LDB7YBL006C UBP9P39967 754 aa8.11□□□□□ -1.11
LDB7YBL006C PTK2P47116 818 aaKnown RBP8.11□□□□□ -1.11
LDB7YBL006C YJR107WP47145 328 aa8.11□□□□□ -1.11
LDB7YBL006C YGR125WP53273 1036 aa8.11□□□□□ -1.11
LDB7YBL006C RPS15Q01855 142 aaKnown RBP8.11□□□□□ -1.11
LDB7YBL006C YVH1Q02256 364 aaKnown RBP8.11□□□□□ -1.11
LDB7YBL006C CDC19P00549 500 aaKnown RBP8.1□□□□□ -1.11
LDB7YBL006C ACE2P21192 770 aa8.1□□□□□ -1.11
LDB7YBL006C WHI3P34761 661 aaKnown RBP8.1□□□□□ -1.11
LDB7YBL006C YKR018CP36114 725 aa8.1□□□□□ -1.11
LDB7YBL006C KSP1P38691 1029 aaKnown RBP8.1□□□□□ -1.11
LDB7YBL006C YPL034WQ03083 165 aa8.1□□□□□ -1.11
LDB7YBL006C NKP2Q06162 153 aa8.1□□□□□ -1.11
LDB7YBL006C MAM3Q12296 706 aa8.1□□□□□ -1.11
LDB7YBL006C SAM1P10659 382 aaKnown RBP8.09□□□□□ -1.11
LDB7YBL006C RIT1P23796 513 aa8.09□□□□□ -1.11
LDB7YBL006C SRP40P32583 406 aaPredicted RBP8.09□□□□□ -1.11
LDB7YBL006C TGL1P34163 548 aa8.09□□□□□ -1.11
LDB7YBL006C PES4P39684 611 aa8.09□□□□□ -1.11
LDB7YBL006C BUL2Q03758 920 aaKnown RBP8.09□□□□□ -1.11
LDB7YBL006C TMA64Q04600 565 aaKnown RBP8.09□□□□□ -1.11
LDB7YBL006C DLD1P32891 587 aa8.08□□□□□ -1.12
LDB7YBL006C SHP1P34223 423 aa8.08□□□□□ -1.12
LDB7YBL006C YFL040WP43562 540 aa8.08□□□□□ -1.12
LDB7YBL006C FMP30Q02883 468 aa8.08□□□□□ -1.12
LDB7YBL006C VPS30Q02948 557 aa8.08□□□□□ -1.12
LDB7YBL006C CSC1Q06538 782 aa8.08□□□□□ -1.12
LDB7YBL006C RIM20Q12033 661 aa8.08□□□□□ -1.12
LDB7YBL006C DBP1P24784 617 aaKnown RBP8.07□□□□□ -1.12
LDB7YBL006C ANP1P32629 500 aa8.07□□□□□ -1.12
LDB7YBL006C VPS29P38759 282 aa8.07□□□□□ -1.12
LDB7YBL006C TOM71P38825 639 aaKnown RBP8.07□□□□□ -1.12
LDB7YBL006C FOL1P53848 824 aa8.07□□□□□ -1.12
LDB7YBL006C UBP10P53874 792 aaPredicted RBP8.07□□□□□ -1.12
LDB7YBL006C HDA1P53973 706 aa8.07□□□□□ -1.12
LDB7YBL006C DUS3Q06053 668 aaKnown RBP8.07□□□□□ -1.12
LDB7YBL006C SPH1Q06160 661 aa8.07□□□□□ -1.12
LDB7YBL006C SSF2Q12153 453 aaPredicted RBP8.07□□□□□ -1.12
LDB7YBL006C MOT1P32333 1867 aa8.06□□□□□ -1.12
LDB7YBL006C MYO1P08964 1928 aa8.06□□□□□ -1.12
LDB7YBL006C YUR1P26725 428 aa8.06□□□□□ -1.12
LDB7YBL006C SKI2P35207 1287 aaKnown RBP RIP-Chip data8.06□□□□□ -1.12not detected
LDB7YBL006C SCS3P53012 380 aa8.06□□□□□ -1.12
LDB7YBL006C EAR1Q03212 550 aa8.06□□□□□ -1.12
LDB7YBL006C NUC1P08466 329 aa8.05□□□□□ -1.12
LDB7YBL006C KTR2P33550 425 aa8.05□□□□□ -1.12
LDB7YBL006C AAP1P37898 856 aaKnown RBP8.05□□□□□ -1.12
LDB7YBL006C MAP2P38174 421 aaKnown RBP8.05□□□□□ -1.12
LDB7YBL006C NOC2P39744 710 aaKnown RBP8.05□□□□□ -1.12
LDB7YBL006C YGL039WP53183 348 aaKnown RBP8.05□□□□□ -1.12
LDB7YBL006C SLD5Q03406 294 aa8.05□□□□□ -1.12
LDB7YBL006C SUE1Q06524 206 aa8.05□□□□□ -1.12
LDB7YBL006C RAD50P12753 1312 aa8.04□□□□□ -1.12
LDB7YBL006C MCR1P36060 302 aaKnown RBP8.04□□□□□ -1.12
LDB7YBL006C DBP7P36120 742 aaKnown RBP8.04□□□□□ -1.12
LDB7YBL006C VPS45P38932 577 aa8.04□□□□□ -1.12
LDB7YBL006C RPT6Q01939 405 aaKnown RBP8.04□□□□□ -1.12
LDB7YBL006C ECM16Q04217 1267 aaKnown RBP8.04□□□□□ -1.12
LDB7YBL006C YMR321CQ04898 105 aa8.04□□□□□ -1.12
LDB7YBL006C UTP4Q06679 776 aaKnown RBP8.04□□□□□ -1.12
LDB7YBL006C MSC6Q08818 692 aaKnown RBP8.04□□□□□ -1.12
LDB7YBL006C ERP3Q12403 225 aa8.04□□□□□ -1.12
LDB7YBL006C YDR461C-AQ2V2P7 80 aa8.04□□□□□ -1.12
LDB7YBL006C UBR2Q07963 1872 aa8.04□□□□□ -1.12
LDB7YBL006C PDC1P06169 563 aaKnown RBP8.03□□□□□ -1.12
LDB7YBL006C POX1P13711 748 aa8.03□□□□□ -1.12
LDB7YBL006C SRP54P20424 541 aaKnown RBP8.03□□□□□ -1.12
LDB7YBL006C CRG1P38892 291 aaRIP-Chip data8.03□□□□□ -1.12not detected
LDB7YBL006C CSM2P40465 213 aa8.03□□□□□ -1.12
LDB7YBL006C SKP2P42843 763 aa8.03□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms