RNA–Protein interactions for RNA: YFL003C

MSH4, Transcript of Protein involved in meiotic recombination, yeast

Gene MSH4, Length 2,637 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH4	YFL003C	NAM8	Q00539	523 aa	Known RBP	4.25	□□□□□ -1.73
MSH4	YFL003C	ESF1	Q06344	628 aa	Known RBP	4.25	□□□□□ -1.73
MSH4	YFL003C	RPP2B	P02400	110 aa	Known RBP	4.24	□□□□□ -1.73
MSH4	YFL003C	CDC34	P14682	295 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	MSC7	P38694	644 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	EEB1	Q02891	456 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	PPM2	Q08282	695 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	CMR1	Q12510	522 aa	Known RBP	4.24	□□□□□ -1.73
MSH4	YFL003C	MRP10	O75012	95 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	RGP1	P16664	663 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	CIC1	P38779	376 aa	Known RBP	4.24	□□□□□ -1.73
MSH4	YFL003C	DOS2	P54858	310 aa		4.24	□□□□□ -1.73
MSH4	YFL003C	PRP5	P21372	849 aa	Predicted RBP	4.23	□□□□□ -1.73
MSH4	YFL003C	GRX1	P25373	110 aa	Known RBP	4.23	□□□□□ -1.73
MSH4	YFL003C	PEP7	P32609	515 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	STE5	P32917	917 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	PET112	P33893	541 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	MNR2	P35724	969 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	YHR020W	P38708	688 aa	Known RBP	4.23	□□□□□ -1.73
MSH4	YFL003C	MON1	P53129	644 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	RPN4	Q03465	531 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	BDF2	Q07442	638 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	ARG82	P07250	355 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	AMN1	P38285	549 aa	Predicted RBP	4.23	□□□□□ -1.73
MSH4	YFL003C	APM2	P38700	605 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	YHL008C	P38750	627 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	ADI1	Q03677	179 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	SRC1	Q03707	834 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	NSE3	Q05541	303 aa		4.23	□□□□□ -1.73
MSH4	YFL003C	CDC19	P00549	500 aa	Known RBP	4.22	□□□□□ -1.73
MSH4	YFL003C	AIM46	P38885	310 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	OXR1	Q08952	273 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	REC8	Q12188	680 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	TFA2	P36145	328 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	FIR1	P40020	876 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	RNH70	P53331	553 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	TCB1	Q12466	1186 aa		4.22	□□□□□ -1.73
MSH4	YFL003C	MAD1	P40957	749 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	IDI1	P15496	288 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	RDH54	P38086	958 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	MRPS18	P42847	217 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	NUP85	P46673	744 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	GDE1	Q02979	1223 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	MCD1	Q12158	566 aa		4.21	□□□□□ -1.74
MSH4	YFL003C	NPR1	P22211	790 aa		4.2	□□□□□ -1.74
MSH4	YFL003C	NOG1	Q02892	647 aa	Known RBP	4.2	□□□□□ -1.74
MSH4	YFL003C	AHP1	P38013	176 aa	Known RBP	4.2	□□□□□ -1.74
MSH4	YFL003C	YER156C	P40093	338 aa	Known RBP	4.2	□□□□□ -1.74
MSH4	YFL003C	FAR11	P53917	953 aa		4.2	□□□□□ -1.74
MSH4	YFL003C	FPR4	Q06205	392 aa	Predicted RBP	4.2	□□□□□ -1.74
MSH4	YFL003C	ESC2	Q06340	456 aa		4.2	□□□□□ -1.74
MSH4	YFL003C	HDA2	Q06629	674 aa		4.2	□□□□□ -1.74
MSH4	YFL003C	PRI2	P20457	528 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	MRPL16	P38064	232 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	RVS167	P39743	482 aa	Known RBP	4.19	□□□□□ -1.74
MSH4	YFL003C	SPF1	P39986	1215 aa	Known RBP	4.19	□□□□□ -1.74
MSH4	YFL003C	YGL140C	P53120	1219 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	HST3	P53687	447 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	YAF9	P53930	226 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	OPI10	Q08202	246 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	CLN2	P20438	545 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
MSH4	YFL003C	SEA4	P38164	1038 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	RGA1	P39083	1007 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	UBP15	P50101	1230 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	GLO4	Q12320	285 aa		4.19	□□□□□ -1.74
MSH4	YFL003C	CCP1	P00431	361 aa		4.18	□□□□□ -1.74
MSH4	YFL003C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
MSH4	YFL003C	HUL5	P53119	910 aa		4.18	□□□□□ -1.74
MSH4	YFL003C	YNR065C	P53751	1116 aa		4.18	□□□□□ -1.74
MSH4	YFL003C	OPT2	Q06593	877 aa		4.18	□□□□□ -1.74
MSH4	YFL003C	TY1A-BL	Q12266	440 aa		4.18	□□□□□ -1.74
MSH4	YFL003C	SEC23	P15303	768 aa	Known RBP	4.17	□□□□□ -1.74
MSH4	YFL003C	BRN1	P38170	754 aa		4.17	□□□□□ -1.74
MSH4	YFL003C	EXO5	P38289	585 aa		4.17	□□□□□ -1.74
MSH4	YFL003C	OSH7	P38755	437 aa		4.17	□□□□□ -1.74
MSH4	YFL003C	BIO5	P53744	561 aa	Known RBP	4.17	□□□□□ -1.74
MSH4	YFL003C	XKS1	P42826	600 aa		4.17	□□□□□ -1.74
MSH4	YFL003C	ALG12	P53730	551 aa		4.17	□□□□□ -1.74
MSH4	YFL003C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-DR6	P0CX70	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-ER1	P0CX71	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-LR2	P0CX72	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-PL	P0CX73	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-JR1	P0CX74	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-LR3	P0CX75	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-ML2	P0CX76	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	SRP40	P32583	406 aa	Predicted RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	NMD2	P38798	1089 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	YTA6	P40328	754 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	INP51	P40559	946 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	LSC2	P53312	427 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	RTT10	Q08924	1013 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-GR1	Q12085	440 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	TY1A-OL	Q92392	440 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	DPS1	P04802	557 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	MSH3	P25336	1018 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	RER2	P35196	286 aa		4.16	□□□□□ -1.74
MSH4	YFL003C	PFD1	P46988	109 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 55.8 ms