RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W RPT4P53549 437 aaKnown RBP16.73■□□□□ 0.27
DEP1YAL013W OSH3P38713 996 aaKnown RBP16.72■□□□□ 0.27
DEP1YAL013W RRI2Q12348 645 aa16.71■□□□□ 0.27
DEP1YAL013W LCB1P25045 558 aaKnown RBP16.7■□□□□ 0.26
DEP1YAL013W UBX2Q04228 584 aa16.7■□□□□ 0.26
DEP1YAL013W IRC4Q03036 179 aa16.69■□□□□ 0.26
DEP1YAL013W FPR4Q06205 392 aaPredicted RBP16.69■□□□□ 0.26
DEP1YAL013W RET1P22276 1149 aaKnown RBP16.68■□□□□ 0.26
DEP1YAL013W BBC1P47068 1157 aa16.68■□□□□ 0.26
DEP1YAL013W OPI1P21957 404 aa16.67■□□□□ 0.26
DEP1YAL013W PBY1P38254 753 aa16.67■□□□□ 0.26
DEP1YAL013W PKH3Q03306 898 aaPredicted RBP16.67■□□□□ 0.26
DEP1YAL013W GRX6Q12438 231 aa16.67■□□□□ 0.26
DEP1YAL013W TRL1P09880 827 aaKnown RBP16.65■□□□□ 0.26
DEP1YAL013W STM1P39015 273 aaKnown RBP16.65■□□□□ 0.26
DEP1YAL013W SET4P42948 560 aa16.65■□□□□ 0.26
DEP1YAL013W LAM4P38800 1345 aa16.65■□□□□ 0.26
DEP1YAL013W NPL4P33755 580 aa16.64■□□□□ 0.25
DEP1YAL013W KAR5Q04746 504 aa16.64■□□□□ 0.25
DEP1YAL013W INM2Q05533 292 aa16.64■□□□□ 0.25
DEP1YAL013W YIR042CP40586 236 aa16.63■□□□□ 0.25
DEP1YAL013W CYB2P00175 591 aa16.62■□□□□ 0.25
DEP1YAL013W PCT1P13259 424 aa16.62■□□□□ 0.25
DEP1YAL013W YER156CP40093 338 aaKnown RBP16.62■□□□□ 0.25
DEP1YAL013W YMR147WP40218 223 aaKnown RBP16.62■□□□□ 0.25
DEP1YAL013W PSF3Q12146 194 aa16.62■□□□□ 0.25
DEP1YAL013W GRX7P38068 203 aa16.61■□□□□ 0.25
DEP1YAL013W IME2P32581 645 aa16.6■□□□□ 0.25
DEP1YAL013W YKU70P32807 602 aa16.6■□□□□ 0.25
DEP1YAL013W AIM9P40053 627 aaKnown RBP16.6■□□□□ 0.25
DEP1YAL013W RLF2Q12495 606 aa16.6■□□□□ 0.25
DEP1YAL013W GEF1P37020 779 aa16.59■□□□□ 0.25
DEP1YAL013W YFH7P43591 353 aa16.59■□□□□ 0.25
DEP1YAL013W TOS4Q06266 489 aa16.59■□□□□ 0.25
DEP1YAL013W TAH18Q12181 623 aa16.59■□□□□ 0.25
DEP1YAL013W ICL1P28240 557 aaPredicted RBP16.58■□□□□ 0.24
DEP1YAL013W WRS1Q12109 432 aaKnown RBP16.58■□□□□ 0.24
DEP1YAL013W RPT3P33298 428 aaKnown RBP16.57■□□□□ 0.24
DEP1YAL013W IOC3P43596 787 aa16.57■□□□□ 0.24
DEP1YAL013W DPL1Q05567 589 aa16.56■□□□□ 0.24
DEP1YAL013W GAS5Q08193 484 aa16.56■□□□□ 0.24
DEP1YAL013W RNR2P09938 399 aaKnown RBP16.55■□□□□ 0.24
DEP1YAL013W SNF3P10870 884 aa16.55■□□□□ 0.24
DEP1YAL013W PTK1P36002 662 aaPredicted RBP16.55■□□□□ 0.24
DEP1YAL013W IRC8P47046 822 aa16.55■□□□□ 0.24
DEP1YAL013W TPM1P17536 199 aaKnown RBP16.54■□□□□ 0.24
DEP1YAL013W SPO22P40511 975 aa16.54■□□□□ 0.24
DEP1YAL013W JJJ2P46997 583 aa16.54■□□□□ 0.24
DEP1YAL013W PRP42Q03776 544 aaKnown RBP16.54■□□□□ 0.24
DEP1YAL013W DIP2Q12220 943 aaPredicted RBP16.54■□□□□ 0.24
DEP1YAL013W RPS9BP05755 195 aaKnown RBP16.53■□□□□ 0.24
DEP1YAL013W ARG82P07250 355 aa16.53■□□□□ 0.24
DEP1YAL013W SRS2P12954 1174 aa16.53■□□□□ 0.24
DEP1YAL013W MET1P36150 593 aa16.53■□□□□ 0.24
DEP1YAL013W SHC1P39000 512 aa16.53■□□□□ 0.24
DEP1YAL013W PPM2Q08282 695 aa16.53■□□□□ 0.24
DEP1YAL013W FLO1P32768 1537 aa16.53■□□□□ 0.24
DEP1YAL013W BOI1P38041 980 aaKnown RBP16.52■□□□□ 0.24
DEP1YAL013W SKI2P35207 1287 aaKnown RBP RIP-Chip data16.51■□□□□ 0.23not detected
DEP1YAL013W ENP2P48234 707 aaKnown RBP16.51■□□□□ 0.23
DEP1YAL013W SSF2Q12153 453 aaPredicted RBP16.5■□□□□ 0.23
DEP1YAL013W LSP1Q12230 341 aaKnown RBP16.5■□□□□ 0.23
DEP1YAL013W COQ1P18900 473 aa16.49■□□□□ 0.23
DEP1YAL013W TIF4632P39936 914 aaKnown RBP16.49■□□□□ 0.23
DEP1YAL013W CIC1P38779 376 aaKnown RBP16.48■□□□□ 0.23
DEP1YAL013W FLO11P08640 1367 aa16.48■□□□□ 0.23
DEP1YAL013W GSM1P42950 618 aa16.47■□□□□ 0.23
DEP1YAL013W ECM23Q02710 187 aa16.47■□□□□ 0.23
DEP1YAL013W RRG1Q12167 365 aaPredicted RBP16.47■□□□□ 0.23
DEP1YAL013W PGA3Q12746 312 aaKnown RBP16.47■□□□□ 0.23
DEP1YAL013W GSC2P40989 1895 aa16.46■□□□□ 0.23
DEP1YAL013W PEP3P27801 918 aa16.46■□□□□ 0.23
DEP1YAL013W MDL2P33311 773 aa16.45■□□□□ 0.22
DEP1YAL013W CRG1P38892 291 aaRIP-Chip data16.45■□□□□ 0.22not detected
DEP1YAL013W TOP1P04786 769 aa16.44■□□□□ 0.22
DEP1YAL013W APL6P46682 809 aa16.44■□□□□ 0.22
DEP1YAL013W NPA3P47122 385 aa16.44■□□□□ 0.22
DEP1YAL013W NSG2P53898 299 aa16.44■□□□□ 0.22
DEP1YAL013W VPS20Q04272 221 aa16.44■□□□□ 0.22
DEP1YAL013W ACK1Q07622 623 aaPredicted RBP16.44■□□□□ 0.22
DEP1YAL013W KRI1P42846 591 aaKnown RBP16.43■□□□□ 0.22
DEP1YAL013W SPN1Q06505 410 aaPredicted RBP16.43■□□□□ 0.22
DEP1YAL013W ATG20Q07528 640 aa16.43■□□□□ 0.22
DEP1YAL013W CHO2P05374 869 aaKnown RBP16.42■□□□□ 0.22
DEP1YAL013W RPS7AP26786 190 aaKnown RBP16.42■□□□□ 0.22
DEP1YAL013W VPS24P36095 224 aaKnown RBP16.42■□□□□ 0.22
DEP1YAL013W PUS6P53294 404 aa16.42■□□□□ 0.22
DEP1YAL013W AFG2P32794 780 aa16.41■□□□□ 0.22
DEP1YAL013W PIP2P52960 996 aa16.41■□□□□ 0.22
DEP1YAL013W RTS1P38903 757 aa16.4■□□□□ 0.22
DEP1YAL013W YJL171CP46992 396 aa16.4■□□□□ 0.22
DEP1YAL013W RPS15Q01855 142 aaKnown RBP16.4■□□□□ 0.22
DEP1YAL013W IMP2'P32351 346 aa16.39■□□□□ 0.21
DEP1YAL013W RER2P35196 286 aa16.39■□□□□ 0.21
DEP1YAL013W YHL050CP38721 697 aa16.39■□□□□ 0.21
DEP1YAL013W FPK1P53739 893 aa16.39■□□□□ 0.21
DEP1YAL013W FBP26P32604 452 aa16.38■□□□□ 0.21
DEP1YAL013W VID28P40547 921 aa16.38■□□□□ 0.21
DEP1YAL013W RRP8P38961 392 aaKnown RBP16.37■□□□□ 0.21
DEP1YAL013W SLN1P39928 1220 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 5,963 RNA–protein pairs in 62.2 ms