RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	TOS1	P38288	455 aa		13.2	□□□□□ -0.3
VPS60	YDR486C	PKH1	Q03407	766 aa		13.2	□□□□□ -0.3
VPS60	YDR486C	SET1	P38827	1080 aa	Known RBP	13.19	□□□□□ -0.3
VPS60	YDR486C	SPO1	P53541	631 aa		13.19	□□□□□ -0.3
VPS60	YDR486C	FCP1	Q03254	732 aa		13.19	□□□□□ -0.3
VPS60	YDR486C	CTI6	Q08923	506 aa		13.19	□□□□□ -0.3
VPS60	YDR486C	RIX7	Q07844	837 aa	Known RBP	13.18	□□□□□ -0.3
VPS60	YDR486C	HPC2	Q01448	625 aa		13.17	□□□□□ -0.3
VPS60	YDR486C	UBP12	P39538	1254 aa		13.16	□□□□□ -0.3
VPS60	YDR486C	RAT1	Q02792	1006 aa	Known RBP	13.15	□□□□□ -0.3
VPS60	YDR486C	ITC1	P53125	1264 aa		13.14	□□□□□ -0.31
VPS60	YDR486C	SSK22	P25390	1331 aa	Predicted RBP	13.13	□□□□□ -0.31
VPS60	YDR486C	GCD7	P32502	381 aa	Predicted RBP	13.13	□□□□□ -0.31
VPS60	YDR486C	HAT1	Q12341	374 aa		13.13	□□□□□ -0.31
VPS60	YDR486C	PSH1	Q12161	406 aa		13.12	□□□□□ -0.31
VPS60	YDR486C	HXT10	P43581	546 aa		13.11	□□□□□ -0.31
VPS60	YDR486C	NOP2	P40991	618 aa	Known RBP	13.1	□□□□□ -0.31
VPS60	YDR486C	HGH1	P48362	394 aa	Known RBP	13.09	□□□□□ -0.31
VPS60	YDR486C	MTC5	Q03897	1148 aa		13.09	□□□□□ -0.31
VPS60	YDR486C	DIB1	Q06819	143 aa	Predicted RBP	13.08	□□□□□ -0.32
VPS60	YDR486C	NMD2	P38798	1089 aa	Known RBP	13.07	□□□□□ -0.32
VPS60	YDR486C	BDF2	Q07442	638 aa		13.07	□□□□□ -0.32
VPS60	YDR486C	SAC3	P46674	1301 aa		13.06	□□□□□ -0.32
VPS60	YDR486C	SUP35	P05453	685 aa	Known RBP	13.04	□□□□□ -0.32
VPS60	YDR486C	SSF1	P38789	453 aa	Predicted RBP	13.03	□□□□□ -0.32
VPS60	YDR486C	MSN5	P52918	1224 aa		13.02	□□□□□ -0.33
VPS60	YDR486C	CAF20	P12962	161 aa	Known RBP	13.01	□□□□□ -0.33
VPS60	YDR486C	PFF1	P38244	976 aa		13.01	□□□□□ -0.33
VPS60	YDR486C	UBP16	Q02863	499 aa		13.01	□□□□□ -0.33
VPS60	YDR486C	SYF1	Q04048	859 aa	Predicted RBP	13.01	□□□□□ -0.33
VPS60	YDR486C	IRC3	Q06683	689 aa		13.01	□□□□□ -0.33
VPS60	YDR486C	SLA1	P32790	1244 aa		13	□□□□□ -0.33
VPS60	YDR486C	ERT1	P38140	529 aa		13	□□□□□ -0.33
VPS60	YDR486C	EAF6	P47128	113 aa		13	□□□□□ -0.33
VPS60	YDR486C	SNU66	Q12420	587 aa	Predicted RBP	13	□□□□□ -0.33
VPS60	YDR486C	PMD1	P32634	1753 aa		12.99	□□□□□ -0.33
VPS60	YDR486C	SMY1	P32364	656 aa	Known RBP	12.99	□□□□□ -0.33
VPS60	YDR486C	RFC1	P38630	861 aa	Known RBP	12.99	□□□□□ -0.33
VPS60	YDR486C	BDP1	P46678	594 aa		12.99	□□□□□ -0.33
VPS60	YDR486C	NKP2	Q06162	153 aa		12.99	□□□□□ -0.33
VPS60	YDR486C	NCB2	Q92317	146 aa		12.99	□□□□□ -0.33
VPS60	YDR486C	SIT4	P20604	311 aa		12.97	□□□□□ -0.33
VPS60	YDR486C	FRD1	P32614	470 aa	Known RBP	12.97	□□□□□ -0.33
VPS60	YDR486C	ECM16	Q04217	1267 aa	Known RBP	12.97	□□□□□ -0.33
VPS60	YDR486C	GYP5	Q12344	894 aa		12.97	□□□□□ -0.33
VPS60	YDR486C	YKL222C	P35995	705 aa		12.96	□□□□□ -0.33
VPS60	YDR486C	RPN1	P38764	993 aa	Known RBP	12.96	□□□□□ -0.33
VPS60	YDR486C	CWH41	P53008	833 aa		12.96	□□□□□ -0.33
VPS60	YDR486C	DPH6	Q12429	685 aa		12.96	□□□□□ -0.33
VPS60	YDR486C	CDC16	P09798	840 aa		12.95	□□□□□ -0.34
VPS60	YDR486C	NGR1	P32831	672 aa	Known RBP	12.95	□□□□□ -0.34
VPS60	YDR486C	ERO1	Q03103	563 aa		12.95	□□□□□ -0.34
VPS60	YDR486C	ADR1	P07248	1323 aa		12.94	□□□□□ -0.34
VPS60	YDR486C	AI2	P03876	854 aa		12.94	□□□□□ -0.34
VPS60	YDR486C	NOT3	P06102	836 aa	Known RBP	12.94	□□□□□ -0.34
VPS60	YDR486C	RPC31	P17890	251 aa		12.94	□□□□□ -0.34
VPS60	YDR486C	SEC18	P18759	758 aa	Known RBP	12.94	□□□□□ -0.34
VPS60	YDR486C	KTR3	P38130	404 aa	Predicted RBP	12.94	□□□□□ -0.34
VPS60	YDR486C	ICP55	P40051	511 aa		12.94	□□□□□ -0.34
VPS60	YDR486C	SAS4	Q04003	481 aa		12.94	□□□□□ -0.34
VPS60	YDR486C	THI3	Q07471	609 aa		12.94	□□□□□ -0.34
VPS60	YDR486C	CTT1	P06115	562 aa		12.93	□□□□□ -0.34
VPS60	YDR486C	ECM21	P38167	1117 aa	Known RBP	12.93	□□□□□ -0.34
VPS60	YDR486C	YGL242C	P53066	181 aa		12.93	□□□□□ -0.34
VPS60	YDR486C	KIN4	Q01919	800 aa		12.93	□□□□□ -0.34
VPS60	YDR486C	PDR18	P53756	1333 aa		12.92	□□□□□ -0.34
VPS60	YDR486C	MGM1	P32266	881 aa		12.92	□□□□□ -0.34
VPS60	YDR486C	RAD50	P12753	1312 aa		12.9	□□□□□ -0.34
VPS60	YDR486C	POM152	P39685	1337 aa		12.9	□□□□□ -0.34
VPS60	YDR486C	SPL2	P38839	148 aa		12.9	□□□□□ -0.34
VPS60	YDR486C	MLC1	P53141	149 aa		12.9	□□□□□ -0.34
VPS60	YDR486C	YNL193W	P53870	558 aa		12.9	□□□□□ -0.34
VPS60	YDR486C	ALO1	P54783	526 aa	Known RBP	12.9	□□□□□ -0.34
VPS60	YDR486C	SRC1	Q03707	834 aa		12.9	□□□□□ -0.34
VPS60	YDR486C	RPN7	Q06103	429 aa	Known RBP	12.9	□□□□□ -0.34
VPS60	YDR486C	KRE2	P27809	442 aa		12.88	□□□□□ -0.35
VPS60	YDR486C	YER156C	P40093	338 aa	Known RBP	12.88	□□□□□ -0.35
VPS60	YDR486C	RPT4	P53549	437 aa	Known RBP	12.87	□□□□□ -0.35
VPS60	YDR486C	RMD1	Q03441	430 aa		12.87	□□□□□ -0.35
VPS60	YDR486C	RET1	P22276	1149 aa	Known RBP	12.85	□□□□□ -0.35
VPS60	YDR486C	NUG1	P40010	520 aa	Known RBP	12.85	□□□□□ -0.35
VPS60	YDR486C	RRI2	Q12348	645 aa		12.85	□□□□□ -0.35
VPS60	YDR486C	GRX6	Q12438	231 aa		12.85	□□□□□ -0.35
VPS60	YDR486C	DUR1,2	P32528	1835 aa	Known RBP	12.85	□□□□□ -0.35
VPS60	YDR486C	GLO3	P38682	493 aa	Known RBP	12.84	□□□□□ -0.35
VPS60	YDR486C	HAL5	P38970	855 aa	Known RBP	12.84	□□□□□ -0.35
VPS60	YDR486C	EPS1	P40557	701 aa		12.84	□□□□□ -0.35
VPS60	YDR486C	MRPS35	P53292	345 aa		12.84	□□□□□ -0.35
VPS60	YDR486C	BRE1	Q07457	700 aa	Known RBP	12.84	□□□□□ -0.35
VPS60	YDR486C	ICL1	P28240	557 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS60	YDR486C	SET4	P42948	560 aa		12.83	□□□□□ -0.36
VPS60	YDR486C	FIG2	P25653	1609 aa		12.82	□□□□□ -0.36
VPS60	YDR486C	VAS1	P07806	1104 aa	Known RBP	12.82	□□□□□ -0.36
VPS60	YDR486C	BRN1	P38170	754 aa		12.82	□□□□□ -0.36
VPS60	YDR486C	PIB2	P53191	635 aa		12.82	□□□□□ -0.36
VPS60	YDR486C	IRC4	Q03036	179 aa		12.82	□□□□□ -0.36
VPS60	YDR486C	UBX2	Q04228	584 aa		12.82	□□□□□ -0.36
VPS60	YDR486C	PIF1	P07271	859 aa		12.81	□□□□□ -0.36
VPS60	YDR486C	LCB1	P25045	558 aa	Known RBP	12.81	□□□□□ -0.36
VPS60	YDR486C	YKU70	P32807	602 aa		12.81	□□□□□ -0.36

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms