RNA–Protein interactions for RNA: YPR189W

SKI3, Transcript of Ski complex component and TPR protein, yeast

Gene SKI3, Length 4,299 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKI3	YPR189W	STM1	P39015	273 aa	Known RBP	2.31	□□□□□ -2.04
SKI3	YPR189W	PEX21	P50091	288 aa		2.31	□□□□□ -2.04
SKI3	YPR189W	GYP5	Q12344	894 aa		2.31	□□□□□ -2.04
SKI3	YPR189W	SIS2	P36024	562 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	YGR273C	P53329	174 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	IQG1	Q12280	1495 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	ENO1	P00924	437 aa	Known RBP	2.3	□□□□□ -2.04
SKI3	YPR189W	SCJ1	P25303	377 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	FPK1	P53739	893 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	CSE4	P36012	229 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	DCW1	P36091	449 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	2.3	□□□□□ -2.04	not detected
SKI3	YPR189W	YMR074C	Q04773	145 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	YPR109W	Q06104	294 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	YBL113C	Q7M4S9	792 aa		2.3	□□□□□ -2.04
SKI3	YPR189W	PUP1	P25043	261 aa		2.29	□□□□□ -2.04
SKI3	YPR189W	YJU3	P28321	313 aa		2.29	□□□□□ -2.04
SKI3	YPR189W	SEC20	P28791	383 aa		2.29	□□□□□ -2.04
SKI3	YPR189W	BRN1	P38170	754 aa		2.29	□□□□□ -2.04
SKI3	YPR189W	YAP5	P40574	245 aa		2.29	□□□□□ -2.04
SKI3	YPR189W	YDJ1	P25491	409 aa	Known RBP	2.28	□□□□□ -2.04
SKI3	YPR189W	TGL4	P36165	910 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	NIS1	P53939	407 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	ECM23	Q02710	187 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	ENO2	P00925	437 aa	Known RBP	2.28	□□□□□ -2.04
SKI3	YPR189W	GRS1	P38088	690 aa	Known RBP	2.28	□□□□□ -2.04
SKI3	YPR189W	UBX7	P38349	436 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	ORC6	P38826	435 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	HST2	P53686	357 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	JIP5	Q06214	492 aa	Predicted RBP	2.28	□□□□□ -2.04
SKI3	YPR189W	ENV9	Q08651	330 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	VTH1	P40438	1549 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	VTH2	P40890	1549 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	TBF1	Q02457	562 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	KAR5	Q04746	504 aa		2.28	□□□□□ -2.04
SKI3	YPR189W	SPT5	P27692	1063 aa	Known RBP	2.28	□□□□□ -2.05
SKI3	YPR189W	PAM1	P37304	830 aa	Known RBP	2.28	□□□□□ -2.05
SKI3	YPR189W	TIF4632	P39936	914 aa	Known RBP	2.28	□□□□□ -2.05
SKI3	YPR189W	YPP1	P46951	817 aa		2.28	□□□□□ -2.05
SKI3	YPR189W	SNQ2	P32568	1501 aa	Known RBP	2.27	□□□□□ -2.05
SKI3	YPR189W	RGR1	P19263	1082 aa		2.27	□□□□□ -2.05
SKI3	YPR189W	SLY41	P22215	453 aa		2.27	□□□□□ -2.05
SKI3	YPR189W	IPL1	P38991	367 aa		2.27	□□□□□ -2.05
SKI3	YPR189W	YTA7	P40340	1379 aa		2.27	□□□□□ -2.05
SKI3	YPR189W	CSC1	Q06538	782 aa		2.27	□□□□□ -2.05
SKI3	YPR189W	POL32	P47110	350 aa		2.26	□□□□□ -2.05
SKI3	YPR189W	SEN54	Q02825	467 aa	Predicted RBP	2.26	□□□□□ -2.05
SKI3	YPR189W	SVF1	Q05515	481 aa		2.26	□□□□□ -2.05
SKI3	YPR189W	TUM1	Q08686	304 aa	Known RBP	2.26	□□□□□ -2.05
SKI3	YPR189W	ERP5	P38819	212 aa		2.26	□□□□□ -2.05
SKI3	YPR189W	MVP1	P40959	511 aa	Known RBP	2.26	□□□□□ -2.05
SKI3	YPR189W	GSC2	P40989	1895 aa		2.26	□□□□□ -2.05
SKI3	YPR189W	SUP45	P12385	437 aa	Known RBP	2.25	□□□□□ -2.05
SKI3	YPR189W	SET4	P42948	560 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	NNF1	P47149	201 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	LAM6	Q08001	693 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	YGL015C	P33199	130 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	OYE2	Q03558	400 aa	Known RBP	2.25	□□□□□ -2.05
SKI3	YPR189W	MGE1	P38523	228 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	RIM21	P48565	533 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	URN1	Q06525	465 aa	Known RBP	2.25	□□□□□ -2.05
SKI3	YPR189W	YEL077C	Q3E7X8	1277 aa		2.25	□□□□□ -2.05
SKI3	YPR189W	HTA1	P04911	132 aa	Known RBP	2.24	□□□□□ -2.05
SKI3	YPR189W	HTA2	P04912	132 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	2.24	□□□□□ -2.05	not detected
SKI3	YPR189W	YHL050C	P38721	697 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	YHR219W	P38900	624 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	TFB4	Q12004	338 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	MAK16	P10962	306 aa	Predicted RBP	2.24	□□□□□ -2.05
SKI3	YPR189W	PPG1	P32838	368 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	MRX10	Q05648	414 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	MCM16	Q12262	181 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	GAL2	P13181	574 aa		2.24	□□□□□ -2.05
SKI3	YPR189W	FPR4	Q06205	392 aa	Predicted RBP	2.24	□□□□□ -2.05
SKI3	YPR189W	PDR5	P33302	1511 aa	Known RBP	2.23	□□□□□ -2.05
SKI3	YPR189W	ISF1	P32488	338 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	ATG3	P40344	310 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	CDC73	Q06697	393 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	TRM1	P15565	570 aa	Known RBP	2.23	□□□□□ -2.05
SKI3	YPR189W	SOL3	P38858	249 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	MAD1	P40957	749 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	ALD4	P46367	519 aa	Known RBP	2.23	□□□□□ -2.05
SKI3	YPR189W	SEC7	P11075	2009 aa	Known RBP	2.23	□□□□□ -2.05
SKI3	YPR189W	SSN2	P38931	1420 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	GLO3	P38682	493 aa	Known RBP	2.23	□□□□□ -2.05
SKI3	YPR189W	ALD2	P47771	506 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	MSC6	Q08818	692 aa	Known RBP	2.23	□□□□□ -2.05
SKI3	YPR189W	SAM3	Q08986	587 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	YRR1	Q12172	810 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	SMC4	Q12267	1418 aa		2.23	□□□□□ -2.05
SKI3	YPR189W	FUR4	P05316	633 aa	Known RBP	2.22	□□□□□ -2.05
SKI3	YPR189W	SIS1	P25294	352 aa	Known RBP	2.22	□□□□□ -2.05
SKI3	YPR189W	NPL4	P33755	580 aa		2.22	□□□□□ -2.05
SKI3	YPR189W	MAC1	P35192	417 aa		2.22	□□□□□ -2.05
SKI3	YPR189W	ILV3	P39522	585 aa	Known RBP	2.22	□□□□□ -2.05
SKI3	YPR189W	PEX29	Q03370	554 aa		2.22	□□□□□ -2.05
SKI3	YPR189W	PUN1	Q06991	263 aa		2.22	□□□□□ -2.05
SKI3	YPR189W	PEP7	P32609	515 aa		2.22	□□□□□ -2.05
SKI3	YPR189W	SRP40	P32583	406 aa	Predicted RBP	2.22	□□□□□ -2.05
SKI3	YPR189W	EMP47	P43555	445 aa		2.22	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 29.3 ms