RNA–Protein interactions for RNA: YPR189W

SKI3, Transcript of Ski complex component and TPR protein, yeast

Gene SKI3, Length 4,299 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKI3	YPR189W	MON2	P48563	1636 aa	Predicted RBP	4.47	□□□□□ -1.69
SKI3	YPR189W	DRS1	P32892	752 aa	Known RBP	4	□□□□□ -1.77
SKI3	YPR189W	SPA2	P23201	1466 aa	Known RBP	3.87	□□□□□ -1.79
SKI3	YPR189W	KOG1	P38873	1557 aa		3.86	□□□□□ -1.79
SKI3	YPR189W	DNA2	P38859	1522 aa		3.85	□□□□□ -1.79
SKI3	YPR189W	INO80	P53115	1489 aa		3.84	□□□□□ -1.8
SKI3	YPR189W	SWR1	Q05471	1514 aa		3.73	□□□□□ -1.81
SKI3	YPR189W	RSE1	Q04693	1361 aa	Known RBP	3.67	□□□□□ -1.82
SKI3	YPR189W	BFR2	Q06631	534 aa	Known RBP	3.62	□□□□□ -1.83
SKI3	YPR189W	TY1B-DR4	Q07793	1604 aa		3.61	□□□□□ -1.83
SKI3	YPR189W	MTC1	P47018	478 aa	Known RBP	3.61	□□□□□ -1.83
SKI3	YPR189W	MIF2	P35201	549 aa		3.6	□□□□□ -1.83
SKI3	YPR189W	TFA1	P36100	482 aa		3.51	□□□□□ -1.85
SKI3	YPR189W	IRC20	Q06554	1556 aa		3.49	□□□□□ -1.85
SKI3	YPR189W	RQC2	Q12532	1038 aa	Known RBP	3.44	□□□□□ -1.86
SKI3	YPR189W	BNI1	P41832	1953 aa		3.43	□□□□□ -1.86
SKI3	YPR189W	MYO2	P19524	1574 aa	Known RBP	3.4	□□□□□ -1.86
SKI3	YPR189W	PEP1	P32319	1579 aa		3.39	□□□□□ -1.87
SKI3	YPR189W	REV3	P14284	1504 aa		3.39	□□□□□ -1.87
SKI3	YPR189W	DNF1	P32660	1571 aa		3.38	□□□□□ -1.87
SKI3	YPR189W	THO2	P53552	1597 aa	Known RBP	3.34	□□□□□ -1.87
SKI3	YPR189W	MDS3	P53094	1487 aa		3.31	□□□□□ -1.88
SKI3	YPR189W	TCB3	Q03640	1545 aa	Known RBP	3.28	□□□□□ -1.88
SKI3	YPR189W	YFR006W	P43590	535 aa		3.26	□□□□□ -1.89
SKI3	YPR189W	DIP2	Q12220	943 aa	Predicted RBP	3.26	□□□□□ -1.89
SKI3	YPR189W	SSK2	P53599	1579 aa		3.22	□□□□□ -1.89
SKI3	YPR189W	AVT3	P36062	692 aa		3.22	□□□□□ -1.89
SKI3	YPR189W	YOR093C	Q12275	1648 aa		3.19	□□□□□ -1.9
SKI3	YPR189W	RPA190	P10964	1664 aa	Known RBP	3.18	□□□□□ -1.9
SKI3	YPR189W	HIR3	P47171	1648 aa		3.17	□□□□□ -1.9
SKI3	YPR189W	CDC25	P04821	1589 aa		3.17	□□□□□ -1.9
SKI3	YPR189W	ESC1	Q03661	1658 aa	Known RBP	3.17	□□□□□ -1.9
SKI3	YPR189W	LTE1	P07866	1435 aa		3.15	□□□□□ -1.9
SKI3	YPR189W	DNF2	Q12675	1612 aa		3.13	□□□□□ -1.91
SKI3	YPR189W	MET5	P47169	1442 aa		3.13	□□□□□ -1.91
SKI3	YPR189W	TAF7	Q05021	590 aa		3.11	□□□□□ -1.91
SKI3	YPR189W	RPO31	P04051	1460 aa		3.09	□□□□□ -1.91
SKI3	YPR189W	NTE1	Q04958	1679 aa		3.09	□□□□□ -1.92
SKI3	YPR189W	BPT1	P14772	1559 aa		3.08	□□□□□ -1.92
SKI3	YPR189W	DMA1	P38823	416 aa		3.07	□□□□□ -1.92
SKI3	YPR189W	YCF1	P39109	1515 aa	Known RBP	3.06	□□□□□ -1.92
SKI3	YPR189W	PDR15	Q04182	1529 aa	Known RBP	3.06	□□□□□ -1.92
SKI3	YPR189W	ATG2	P53855	1592 aa		3.03	□□□□□ -1.92
SKI3	YPR189W	BUD4	P47136	1447 aa		3.02	□□□□□ -1.93
SKI3	YPR189W	HSL1	P34244	1518 aa		3	□□□□□ -1.93
SKI3	YPR189W	PTP3	P40048	928 aa		2.99	□□□□□ -1.93
SKI3	YPR189W	RKR1	Q04781	1562 aa		2.97	□□□□□ -1.93
SKI3	YPR189W	TY1B-BR	Q12193	1756 aa		2.95	□□□□□ -1.94
SKI3	YPR189W	TY1B-GR3	Q12316	1755 aa		2.95	□□□□□ -1.94
SKI3	YPR189W	TY1B-OR	Q92393	1755 aa		2.95	□□□□□ -1.94
SKI3	YPR189W	ECM5	Q03214	1411 aa		2.95	□□□□□ -1.94
SKI3	YPR189W	SIN3	P22579	1536 aa		2.92	□□□□□ -1.94
SKI3	YPR189W	RPL17A	P05740	184 aa	Known RBP	2.91	□□□□□ -1.94
SKI3	YPR189W	RPL17B	P46990	184 aa	Known RBP	2.91	□□□□□ -1.94
SKI3	YPR189W	YRF1-1	P0CX20	1796 aa		2.91	□□□□□ -1.94
SKI3	YPR189W	YRF1-5	P0CX21	1796 aa		2.91	□□□□□ -1.94
SKI3	YPR189W	YRF1-8	P0CX22	1796 aa		2.91	□□□□□ -1.94
SKI3	YPR189W	ISW2	Q08773	1120 aa		2.91	□□□□□ -1.94
SKI3	YPR189W	GEA2	P39993	1459 aa	Known RBP	2.9	□□□□□ -1.95
SKI3	YPR189W	LEO1	P38439	464 aa		2.88	□□□□□ -1.95
SKI3	YPR189W	SPT6	P23615	1451 aa	Known RBP	2.87	□□□□□ -1.95
SKI3	YPR189W	REB1	P21538	810 aa		2.87	□□□□□ -1.95
SKI3	YPR189W	FAP1	P53971	965 aa		2.86	□□□□□ -1.95
SKI3	YPR189W	RPG1	P38249	964 aa	Known RBP	2.85	□□□□□ -1.95
SKI3	YPR189W	DOP1	Q03921	1698 aa		2.84	□□□□□ -1.95
SKI3	YPR189W	SSP1	P38871	571 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-H	O13535	1793 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-DR5	P0C2I2	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-DR6	P0C2I3	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-LR2	P0C2I5	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-PR2	P0C2J0	1756 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-JR1	P47098	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-ML2	Q03434	1755 aa	Known RBP	2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-ER1	Q03612	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-ML1	Q04711	1755 aa	Known RBP	2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-GR2	Q12269	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-OL	Q12273	1755 aa		2.83	□□□□□ -1.96
SKI3	YPR189W	TY1B-PL	Q12414	1755 aa	Known RBP	2.83	□□□□□ -1.96
SKI3	YPR189W	MMS1	Q06211	1407 aa		2.82	□□□□□ -1.96
SKI3	YPR189W	YAH1	Q12184	172 aa	Known RBP	2.82	□□□□□ -1.96
SKI3	YPR189W	ESP1	Q03018	1630 aa		2.81	□□□□□ -1.96
SKI3	YPR189W	TY2B-LR1	P0C2J3	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-F	P0CX63	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-GR2	P0CX64	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-C	P25384	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-DR2	Q03494	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY1B-DR1	Q03855	1755 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-DR3	Q07791	1770 aa	Known RBP	2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-OR1	Q12113	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-DR1	Q12472	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	TY2B-OR2	Q12501	1770 aa		2.8	□□□□□ -1.96
SKI3	YPR189W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	2.8	□□□□□ -1.96	not detected
SKI3	YPR189W	RPO21	P04050	1733 aa	Known RBP	2.79	□□□□□ -1.96
SKI3	YPR189W	SGS1	P35187	1447 aa		2.77	□□□□□ -1.97
SKI3	YPR189W	SPO14	P36126	1683 aa		2.77	□□□□□ -1.97
SKI3	YPR189W	YIL055C	P40523	627 aa	Known RBP	2.76	□□□□□ -1.97
SKI3	YPR189W	LEU3	P08638	886 aa		2.76	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 33.9 ms