RNA–Protein interactions for RNA: YDL185W

VMA1, Transcript of Subunit A of the V1 peripheral membrane domain of V-ATPase, yeast

Gene VMA1, Length 3,216 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA1	YDL185W	NPA3	P47122	385 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	COG8	Q04632	607 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	YLR271W	Q06152	274 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	NUP145	P49687	1317 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	KRE5	P22023	1365 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	PSK1	P31374	1356 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	SPE2	P21182	396 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	TPD3	P31383	635 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	RPN12	P32496	274 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	RVS167	P39743	482 aa	Known RBP	4.75	□□□□□ -1.65
VMA1	YDL185W	UTP13	Q05946	817 aa	Known RBP	4.75	□□□□□ -1.65
VMA1	YDL185W	DNF3	Q12674	1656 aa		4.75	□□□□□ -1.65
VMA1	YDL185W	AAD16	Q02895	342 aa		4.74	□□□□□ -1.65
VMA1	YDL185W	DEP1	P31385	405 aa		4.74	□□□□□ -1.65
VMA1	YDL185W	KRI1	P42846	591 aa	Known RBP	4.74	□□□□□ -1.65
VMA1	YDL185W	STU2	P46675	888 aa		4.74	□□□□□ -1.65
VMA1	YDL185W	RAD9	P14737	1309 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	CLB1	P24868	471 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	SPB4	P25808	606 aa	Predicted RBP	4.73	□□□□□ -1.65
VMA1	YDL185W	MIC60	P36112	540 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	RTR1	P40084	226 aa	Predicted RBP	4.73	□□□□□ -1.65
VMA1	YDL185W	MSH3	P25336	1018 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	BYE1	P36106	594 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	SFI1	Q12369	946 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	DUR1,2	P32528	1835 aa	Known RBP	4.73	□□□□□ -1.65
VMA1	YDL185W	YRF1-4	O13559	1382 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	YML133C	Q03099	1374 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	YLL067C	Q07888	1374 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	YLL066C	Q99208	1374 aa		4.73	□□□□□ -1.65
VMA1	YDL185W	DLD1	P32891	587 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	YAP3	P38749	330 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	ILV3	P39522	585 aa	Known RBP	4.72	□□□□□ -1.65
VMA1	YDL185W	YOL087C	Q99247	1116 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	CYC8	P14922	966 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	PRD1	P25375	712 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	MPE1	P35728	441 aa	Known RBP	4.72	□□□□□ -1.65
VMA1	YDL185W	VPS4	P52917	437 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	HRQ1	Q05549	1077 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	CSE4	P36012	229 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	PBY1	P38254	753 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	CEP3	P40969	608 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	HST1	P53685	503 aa		4.72	□□□□□ -1.65
VMA1	YDL185W	YGL140C	P53120	1219 aa		4.71	□□□□□ -1.66
VMA1	YDL185W	YGL081W	P53156	320 aa		4.71	□□□□□ -1.66
VMA1	YDL185W	SSL2	Q00578	843 aa		4.71	□□□□□ -1.66
VMA1	YDL185W	YMR102C	Q03177	834 aa		4.71	□□□□□ -1.66
VMA1	YDL185W	SML1	Q04964	104 aa		4.71	□□□□□ -1.66
VMA1	YDL185W	SIR4	P11978	1358 aa		4.71	□□□□□ -1.66
VMA1	YDL185W	RNT1	Q02555	471 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	TIM50	Q02776	476 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	VPS20	Q04272	221 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	SPT2	P06843	333 aa	Predicted RBP	4.7	□□□□□ -1.66
VMA1	YDL185W	MSH1	P25846	959 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	BRN1	P38170	754 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	GCR2	Q01722	534 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	NKP2	Q06162	153 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	RTT109	Q07794	436 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	SCT1	P32784	759 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	MGA2	P40578	1113 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	MRS2	Q01926	470 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	PRP3	Q03338	469 aa	Predicted RBP	4.7	□□□□□ -1.66
VMA1	YDL185W	APC11	Q12157	165 aa		4.7	□□□□□ -1.66
VMA1	YDL185W	SEC7	P11075	2009 aa	Known RBP	4.69	□□□□□ -1.66
VMA1	YDL185W	MNR2	P35724	969 aa		4.69	□□□□□ -1.66
VMA1	YDL185W	RSM25	P40496	264 aa		4.69	□□□□□ -1.66
VMA1	YDL185W	MSH4	P40965	878 aa	Predicted RBP	4.69	□□□□□ -1.66
VMA1	YDL185W	CWH41	P53008	833 aa		4.69	□□□□□ -1.66
VMA1	YDL185W	TRP5	P00931	707 aa	Known RBP	4.69	□□□□□ -1.66
VMA1	YDL185W	SRP54	P20424	541 aa	Known RBP	4.69	□□□□□ -1.66
VMA1	YDL185W	HYR1	P40581	163 aa	Known RBP	4.69	□□□□□ -1.66
VMA1	YDL185W	YNL011C	P53980	444 aa		4.69	□□□□□ -1.66
VMA1	YDL185W	KEX1	P09620	729 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	MET10	P39692	1035 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	HXT13	P39924	564 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	VPS72	Q03388	795 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	DID4	P36108	232 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	MRPL10	P36520	322 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	RSM7	P47150	247 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	YGL082W	P53155	381 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	YNL035C	P53962	389 aa	Known RBP	4.68	□□□□□ -1.66
VMA1	YDL185W	CST9	Q06032	482 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	YRF1-1	P0CX20	1796 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	YRF1-5	P0CX21	1796 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	YRF1-8	P0CX22	1796 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	RAD50	P12753	1312 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	USO1	P25386	1790 aa		4.68	□□□□□ -1.66
VMA1	YDL185W	TRL1	P09880	827 aa	Known RBP	4.68	□□□□□ -1.66
VMA1	YDL185W	BNR1	P40450	1375 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	AUS1	Q08409	1394 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	SAP190	P36123	1033 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	HXT17	P53631	564 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	UBP10	P53874	792 aa	Predicted RBP	4.67	□□□□□ -1.66
VMA1	YDL185W	RPN7	Q06103	429 aa	Known RBP	4.67	□□□□□ -1.66
VMA1	YDL185W	MFT1	P33441	392 aa	Known RBP	4.67	□□□□□ -1.66
VMA1	YDL185W	YKL068W-A	Q3E826	78 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	NUP188	P52593	1655 aa	Known RBP	4.67	□□□□□ -1.66
VMA1	YDL185W	RTT107	P38850	1070 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	VPS41	P38959	992 aa		4.67	□□□□□ -1.66
VMA1	YDL185W	ETT1	Q08421	412 aa	Known RBP	4.67	□□□□□ -1.66
VMA1	YDL185W	PSH1	Q12161	406 aa		4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 87.1 ms