Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 NSR1YGR159C 1245 nt20.5■□□□□ 0.87
MSH1P25846 YML009W-BYML009W-B 477 nt20.13■□□□□ 0.81
MSH1P25846 NOP1YDL014W 984 nt19.71■□□□□ 0.75
MSH1P25846 MDJ1YFL016C 1536 nt19.11■□□□□ 0.65
MSH1P25846 YKL036CYKL036C 393 nt18.22■□□□□ 0.51
MSH1P25846 YJL027CYJL027C 417 nt17.46■□□□□ 0.39
MSH1P25846 Q0297Q0297 156 nt17.21■□□□□ 0.35
MSH1P25846 SRX1YKL086W 384 nt17.15■□□□□ 0.34
MSH1P25846 DBP2YNL112W 1641 nt16.56■□□□□ 0.24
MSH1P25846 SCS3YGL126W 1143 nt16.55■□□□□ 0.24
MSH1P25846 SSA3YBL075C 1950 nt16.51■□□□□ 0.23
MSH1P25846 YBR190WYBR190W 312 nt16.37■□□□□ 0.21
MSH1P25846 YCR051WYCR051W 669 nt16.28■□□□□ 0.2
MSH1P25846 RTC3YHR087W 336 nt16.05■□□□□ 0.16
MSH1P25846 YOL085CYOL085C 342 nt15.72■□□□□ 0.11
MSH1P25846 TRN1tP(UGG)A 72 nt15.57■□□□□ 0.08
MSH1P25846 SUF9tP(UGG)F 72 nt15.57■□□□□ 0.08
MSH1P25846 SUF8tP(UGG)H 72 nt15.57■□□□□ 0.08
MSH1P25846 tP(UGG)LtP(UGG)L 72 nt15.57■□□□□ 0.08
MSH1P25846 SUF7tP(UGG)M 72 nt15.57■□□□□ 0.08
MSH1P25846 tP(UGG)N1tP(UGG)N1 72 nt15.57■□□□□ 0.08
MSH1P25846 tP(UGG)N2tP(UGG)N2 72 nt15.57■□□□□ 0.08
MSH1P25846 tP(UGG)O1tP(UGG)O1 72 nt15.57■□□□□ 0.08
MSH1P25846 SUF11tP(UGG)O2 72 nt15.57■□□□□ 0.08
MSH1P25846 PUT4YOR348C 1884 nt15.55■□□□□ 0.08
MSH1P25846 CCC1YLR220W 969 nt15.51■□□□□ 0.07
MSH1P25846 RPP1BYDL130W 321 nt15.44■□□□□ 0.06
MSH1P25846 PKP1YIL042C 1185 nt15.43■□□□□ 0.06
MSH1P25846 RVS167YDR388W 1449 nt15.26■□□□□ 0.03
MSH1P25846 SCJ1YMR214W 1134 nt15.17■□□□□ 0.02
MSH1P25846 POA1YBR022W 534 nt15.05■□□□□ -0
MSH1P25846 ARE1YCR048W 1833 nt15.05■□□□□ -0
MSH1P25846 YHR049C-AYHR049C-A 297 nt14.86□□□□□ -0.03
MSH1P25846 ATS1YAL020C 1002 nt14.85□□□□□ -0.03
MSH1P25846 BSC6YOL137W 1494 nt14.84□□□□□ -0.03
MSH1P25846 SAH1YER043C 1350 nt14.83□□□□□ -0.04
MSH1P25846 SPT5YML010W 3192 nt14.73□□□□□ -0.05
MSH1P25846 URN1YPR152C 1398 nt14.73□□□□□ -0.05
MSH1P25846 SCR1SCR1 522 nt14.69□□□□□ -0.06
MSH1P25846 PET122YER153C 765 nt14.68□□□□□ -0.06
MSH1P25846 tP(UGG)O3tP(UGG)O3 72 nt14.62□□□□□ -0.07
MSH1P25846 OPI9YLR338W 858 nt14.62□□□□□ -0.07
MSH1P25846 SSA4YER103W 1929 nt14.61□□□□□ -0.07
MSH1P25846 DEP1YAL013W 1218 nt14.58□□□□□ -0.08
MSH1P25846 SHR5YOL110W 714 nt14.57□□□□□ -0.08
MSH1P25846 BUD23YCR047C 828 nt14.48□□□□□ -0.09
MSH1P25846 RRN5YLR141W 1092 nt14.29□□□□□ -0.12
MSH1P25846 PTC2YER089C 1395 nt14.22□□□□□ -0.13
MSH1P25846 RPN10YHR200W 807 nt14.2□□□□□ -0.14
MSH1P25846 YDJ1YNL064C 1230 nt14.18□□□□□ -0.14
MSH1P25846 PUN1YLR414C 792 nt14.15□□□□□ -0.14
MSH1P25846 BDF1YLR399C 2061 nt14.13□□□□□ -0.15
MSH1P25846 YNL208WYNL208W 600 nt14.11□□□□□ -0.15
MSH1P25846 RSB1YOR049C 1065 nt14.07□□□□□ -0.16
MSH1P25846 NAB2YGL122C 1578 nt14.07□□□□□ -0.16
MSH1P25846 YER088W-BYER088W-B 147 nt14□□□□□ -0.17
MSH1P25846 MEP2YNL142W 1500 nt13.98□□□□□ -0.17
MSH1P25846 YJR018WYJR018W 363 nt13.97□□□□□ -0.17
MSH1P25846 TAT1YBR069C 1860 nt13.9□□□□□ -0.18
MSH1P25846 GAR1YHR089C 618 nt13.89□□□□□ -0.19
MSH1P25846 DCW1YKL046C 1350 nt13.84□□□□□ -0.19
MSH1P25846 FIS1YIL065C 468 nt13.84□□□□□ -0.19
MSH1P25846 FPR4YLR449W 1179 nt13.79□□□□□ -0.2
MSH1P25846 DAL1YIR027C 1383 nt13.74□□□□□ -0.21
MSH1P25846 PST2YDR032C 597 nt13.72□□□□□ -0.21
MSH1P25846 PAC11YDR488C 1602 nt13.67□□□□□ -0.22
MSH1P25846 YJR120WYJR120W 351 nt13.66□□□□□ -0.22
MSH1P25846 YPS1YLR120C 1710 nt13.66□□□□□ -0.22
MSH1P25846 PHO4YFR034C 939 nt13.65□□□□□ -0.22
MSH1P25846 YBR220CYBR220C 1683 nt13.58□□□□□ -0.24
MSH1P25846 YHR165W-AYHR165W-A 312 nt13.57□□□□□ -0.24
MSH1P25846 EMI2YDR516C 1503 nt13.56□□□□□ -0.24
MSH1P25846 INM2YDR287W 879 nt13.5□□□□□ -0.25
MSH1P25846 SSA1YAL005C 1929 nt13.47□□□□□ -0.25
MSH1P25846 Q0182Q0182 405 nt13.46□□□□□ -0.25
MSH1P25846 YMR090WYMR090W 684 nt13.43□□□□□ -0.26
MSH1P25846 YDR095CYDR095C 411 nt13.42□□□□□ -0.26
MSH1P25846 RPP2BYDR382W 333 nt13.41□□□□□ -0.26
MSH1P25846 TIR1YER011W 765 nt13.41□□□□□ -0.26
MSH1P25846 CAC2YML102W 1407 nt13.37□□□□□ -0.27
MSH1P25846 SDH1YKL148C 1923 nt13.37□□□□□ -0.27
MSH1P25846 YDL221WYDL221W 552 nt13.36□□□□□ -0.27
MSH1P25846 YBL100CYBL100C 315 nt13.31□□□□□ -0.28
MSH1P25846 YKL097CYKL097C 411 nt13.29□□□□□ -0.28
MSH1P25846 PTP1YDL230W 1008 nt13.27□□□□□ -0.29
MSH1P25846 PCH2YBR186W 1695 nt13.25□□□□□ -0.29
MSH1P25846 GUT2YIL155C 1950 nt13.21□□□□□ -0.29
MSH1P25846 NVJ2YPR091C 2313 nt13.2□□□□□ -0.3
MSH1P25846 SRB2YHR041C 633 nt13.19□□□□□ -0.3
MSH1P25846 RPP2AYOL039W 321 nt13.18□□□□□ -0.3
MSH1P25846 SCC4YER147C 1875 nt13.18□□□□□ -0.3
MSH1P25846 FUN26YAL022C 1554 nt13.14□□□□□ -0.31
MSH1P25846 IRC15YPL017C 1500 nt13.13□□□□□ -0.31
MSH1P25846 SHU1YHL006C 453 nt13.11□□□□□ -0.31
MSH1P25846 SEC11YIR022W 504 nt13.1□□□□□ -0.31
MSH1P25846 ALF1YNL148C 765 nt13.09□□□□□ -0.31
MSH1P25846 GIS3YLR094C 1509 nt13.06□□□□□ -0.32
MSH1P25846 BDH2YAL061W 1254 nt13.04□□□□□ -0.32
MSH1P25846 PIB2YGL023C 1908 nt13.02□□□□□ -0.32
MSH1P25846 YSC84YHR016C 1407 nt13.01□□□□□ -0.33
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms