Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 YML009W-BYML009W-B 477 nt26.28■■□□□ 1.8
RTR1P40084 NSR1YGR159C 1245 nt26.08■■□□□ 1.77
RTR1P40084 NOP1YDL014W 984 nt25.51■■□□□ 1.67
RTR1P40084 YKL036CYKL036C 393 nt23.59■■□□□ 1.37
RTR1P40084 MDJ1YFL016C 1536 nt23.18■■□□□ 1.3
RTR1P40084 Q0297Q0297 156 nt22.37■■□□□ 1.17
RTR1P40084 SRX1YKL086W 384 nt22.32■■□□□ 1.16
RTR1P40084 YJL027CYJL027C 417 nt22.03■■□□□ 1.12
RTR1P40084 SCS3YGL126W 1143 nt21.5■■□□□ 1.03
RTR1P40084 YCR051WYCR051W 669 nt21.18■□□□□ 0.98
RTR1P40084 DBP2YNL112W 1641 nt20.53■□□□□ 0.88
RTR1P40084 YOL085CYOL085C 342 nt20.46■□□□□ 0.87
RTR1P40084 TRN1tP(UGG)A 72 nt20.18■□□□□ 0.82
RTR1P40084 SUF9tP(UGG)F 72 nt20.18■□□□□ 0.82
RTR1P40084 SUF8tP(UGG)H 72 nt20.18■□□□□ 0.82
RTR1P40084 tP(UGG)LtP(UGG)L 72 nt20.18■□□□□ 0.82
RTR1P40084 SUF7tP(UGG)M 72 nt20.18■□□□□ 0.82
RTR1P40084 tP(UGG)N1tP(UGG)N1 72 nt20.18■□□□□ 0.82
RTR1P40084 tP(UGG)N2tP(UGG)N2 72 nt20.18■□□□□ 0.82
RTR1P40084 tP(UGG)O1tP(UGG)O1 72 nt20.18■□□□□ 0.82
RTR1P40084 SUF11tP(UGG)O2 72 nt20.18■□□□□ 0.82
RTR1P40084 PKP1YIL042C 1185 nt20.17■□□□□ 0.82
RTR1P40084 RPP1BYDL130W 321 nt20.07■□□□□ 0.8
RTR1P40084 CCC1YLR220W 969 nt19.99■□□□□ 0.79
RTR1P40084 YBR190WYBR190W 312 nt19.71■□□□□ 0.75
RTR1P40084 RTC3YHR087W 336 nt19.29■□□□□ 0.68
RTR1P40084 ATS1YAL020C 1002 nt19.24■□□□□ 0.67
RTR1P40084 RVS167YDR388W 1449 nt19.24■□□□□ 0.67
RTR1P40084 SCJ1YMR214W 1134 nt19.23■□□□□ 0.67
RTR1P40084 PET122YER153C 765 nt19.2■□□□□ 0.66
RTR1P40084 tP(UGG)O3tP(UGG)O3 72 nt19.1■□□□□ 0.65
RTR1P40084 SCR1SCR1 522 nt18.94■□□□□ 0.62
RTR1P40084 RRN5YLR141W 1092 nt18.65■□□□□ 0.58
RTR1P40084 SHR5YOL110W 714 nt18.59■□□□□ 0.57
RTR1P40084 YDJ1YNL064C 1230 nt18.46■□□□□ 0.55
RTR1P40084 YER088W-BYER088W-B 147 nt18.29■□□□□ 0.52
RTR1P40084 RSB1YOR049C 1065 nt18.26■□□□□ 0.51
RTR1P40084 DEP1YAL013W 1218 nt18.1■□□□□ 0.49
RTR1P40084 GAR1YHR089C 618 nt18.08■□□□□ 0.48
RTR1P40084 URN1YPR152C 1398 nt18.07■□□□□ 0.48
RTR1P40084 PUT4YOR348C 1884 nt17.92■□□□□ 0.46
RTR1P40084 PST2YDR032C 597 nt17.82■□□□□ 0.44
RTR1P40084 OPI9YLR338W 858 nt17.8■□□□□ 0.44
RTR1P40084 YNL208WYNL208W 600 nt17.78■□□□□ 0.44
RTR1P40084 RPN10YHR200W 807 nt17.76■□□□□ 0.43
RTR1P40084 SAH1YER043C 1350 nt17.71■□□□□ 0.43
RTR1P40084 ARE1YCR048W 1833 nt17.61■□□□□ 0.41
RTR1P40084 TIR1YER011W 765 nt17.45■□□□□ 0.38
RTR1P40084 YHR049C-AYHR049C-A 297 nt17.37■□□□□ 0.37
RTR1P40084 POA1YBR022W 534 nt17.37■□□□□ 0.37
RTR1P40084 PUN1YLR414C 792 nt17.27■□□□□ 0.36
RTR1P40084 SSA1YAL005C 1929 nt17.27■□□□□ 0.35
RTR1P40084 YJR018WYJR018W 363 nt17.23■□□□□ 0.35
RTR1P40084 SHU1YHL006C 453 nt17.1■□□□□ 0.33
RTR1P40084 YKL097CYKL097C 411 nt17.1■□□□□ 0.33
RTR1P40084 PTC2YER089C 1395 nt17.09■□□□□ 0.33
RTR1P40084 SRB2YHR041C 633 nt17.05■□□□□ 0.32
RTR1P40084 YJR120WYJR120W 351 nt17.04■□□□□ 0.32
RTR1P40084 BSC6YOL137W 1494 nt16.99■□□□□ 0.31
RTR1P40084 BUD23YCR047C 828 nt16.97■□□□□ 0.31
RTR1P40084 RPP2BYDR382W 333 nt16.86■□□□□ 0.29
RTR1P40084 YAL037C-BYAL037C-B 975 nt16.84■□□□□ 0.29
RTR1P40084 NAB2YGL122C 1578 nt16.82■□□□□ 0.28
RTR1P40084 WWM1YFL010C 636 nt16.72■□□□□ 0.27
RTR1P40084 FIS1YIL065C 468 nt16.64■□□□□ 0.25
RTR1P40084 DAL1YIR027C 1383 nt16.63■□□□□ 0.25
RTR1P40084 INM2YDR287W 879 nt16.6■□□□□ 0.25
RTR1P40084 FPR4YLR449W 1179 nt16.6■□□□□ 0.25
RTR1P40084 SSA3YBL075C 1950 nt16.57■□□□□ 0.24
RTR1P40084 YGR021WYGR021W 873 nt16.56■□□□□ 0.24
RTR1P40084 HOM6YJR139C 1080 nt16.56■□□□□ 0.24
RTR1P40084 BDH2YAL061W 1254 nt16.56■□□□□ 0.24
RTR1P40084 MNP1YGL068W 585 nt16.51■□□□□ 0.23
RTR1P40084 PHO4YFR034C 939 nt16.48■□□□□ 0.23
RTR1P40084 YBL100CYBL100C 315 nt16.46■□□□□ 0.23
RTR1P40084 YOR139CYOR139C 393 nt16.46■□□□□ 0.23
RTR1P40084 YFL021C-AYFL021C-A 855 nt16.4■□□□□ 0.22
RTR1P40084 LSM3YLR438C-A 270 nt16.33■□□□□ 0.2
RTR1P40084 RKM5YLR137W 1104 nt16.31■□□□□ 0.2
RTR1P40084 FUN26YAL022C 1554 nt16.28■□□□□ 0.2
RTR1P40084 NPL3YDR432W 1245 nt16.26■□□□□ 0.19
RTR1P40084 TRM9YML014W 840 nt16.23■□□□□ 0.19
RTR1P40084 YOL037CYOL037C 354 nt16.18■□□□□ 0.18
RTR1P40084 SPT5YML010W 3192 nt16.16■□□□□ 0.18
RTR1P40084 YPS1YLR120C 1710 nt16.14■□□□□ 0.17
RTR1P40084 CCT6YDR188W 1641 nt16.08■□□□□ 0.16
RTR1P40084 YDR095CYDR095C 411 nt16.06■□□□□ 0.16
RTR1P40084 ALF1YNL148C 765 nt16.02■□□□□ 0.16
RTR1P40084 YHR165W-AYHR165W-A 312 nt15.96■□□□□ 0.15
RTR1P40084 MEP2YNL142W 1500 nt15.92■□□□□ 0.14
RTR1P40084 SUF2tP(AGG)C 72 nt15.9■□□□□ 0.14
RTR1P40084 SUF10tP(AGG)N 72 nt15.9■□□□□ 0.14
RTR1P40084 YLR281CYLR281C 468 nt15.84■□□□□ 0.13
RTR1P40084 tM(CAU)CtM(CAU)C 72 nt15.81■□□□□ 0.12
RTR1P40084 IMT4tM(CAU)E 72 nt15.81■□□□□ 0.12
RTR1P40084 IMT3tM(CAU)J3 72 nt15.81■□□□□ 0.12
RTR1P40084 IMT1tM(CAU)O1 72 nt15.81■□□□□ 0.12
RTR1P40084 IMT2tM(CAU)P 72 nt15.81■□□□□ 0.12
RTR1P40084 SIS1YNL007C 1059 nt15.8■□□□□ 0.12
RTR1P40084 WHI5YOR083W 888 nt15.8■□□□□ 0.12
Retrieved 100 of 7,029 protein–RNA pairs in 12 ms