RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W DCC1P25559 380 aa4.93□□□□□ -1.62
PRP40YKL012W YKL162CP36052 402 aa4.93□□□□□ -1.62
PRP40YKL012W YPT35P38815 214 aaKnown RBP4.93□□□□□ -1.62
PRP40YKL012W YCH1P42937 148 aa4.93□□□□□ -1.62
PRP40YKL012W AIM24P47127 394 aa4.93□□□□□ -1.62
PRP40YKL012W RRN11Q04712 507 aa4.93□□□□□ -1.62
PRP40YKL012W PCL9Q12477 304 aa4.93□□□□□ -1.62
PRP40YKL012W YER078W-AQ3E7A2 54 aa4.93□□□□□ -1.62
PRP40YKL012W MRPL37P36532 105 aa4.93□□□□□ -1.62
PRP40YKL012W MMS21P38632 267 aa4.93□□□□□ -1.62
PRP40YKL012W MAM33P40513 266 aa4.93□□□□□ -1.62
PRP40YKL012W YJR030CP47101 745 aa4.93□□□□□ -1.62
PRP40YKL012W PXR1P53335 271 aaPredicted RBP4.93□□□□□ -1.62
PRP40YKL012W ALE1Q08548 619 aa4.93□□□□□ -1.62
PRP40YKL012W YGK3Q12222 375 aaPredicted RBP4.93□□□□□ -1.62
PRP40YKL012W YBR298C-AQ8TGK4 73 aa4.93□□□□□ -1.62
PRP40YKL012W TY3B-GQ99315 1547 aa4.92□□□□□ -1.62
PRP40YKL012W ACB1P31787 87 aa4.92□□□□□ -1.62
PRP40YKL012W CTK3P46963 296 aaPredicted RBP4.92□□□□□ -1.62
PRP40YKL012W EMC2P47133 292 aaKnown RBP4.92□□□□□ -1.62
PRP40YKL012W YNL260CP53846 198 aa4.92□□□□□ -1.62
PRP40YKL012W MTQ1P53944 314 aa4.92□□□□□ -1.62
PRP40YKL012W UBX2Q04228 584 aa4.92□□□□□ -1.62
PRP40YKL012W YMR317WQ04893 1140 aa4.92□□□□□ -1.62
PRP40YKL012W TSR1Q07381 788 aaKnown RBP4.92□□□□□ -1.62
PRP40YKL012W YDL114WQ07530 308 aa4.92□□□□□ -1.62
PRP40YKL012W RRT8Q08219 342 aa4.92□□□□□ -1.62
PRP40YKL012W TIP41Q12199 356 aa4.92□□□□□ -1.62
PRP40YKL012W HTZ1Q12692 134 aaKnown RBP4.92□□□□□ -1.62
PRP40YKL012W IKI3Q06706 1349 aaKnown RBP4.91□□□□□ -1.62
PRP40YKL012W RPL5P26321 297 aaKnown RBP4.91□□□□□ -1.62
PRP40YKL012W DEG1P31115 442 aaKnown RBP4.91□□□□□ -1.62
PRP40YKL012W ECT1P33412 323 aa4.91□□□□□ -1.62
PRP40YKL012W SPO23P33757 523 aa4.91□□□□□ -1.62
PRP40YKL012W SMC2P38989 1170 aaKnown RBP4.91□□□□□ -1.62
PRP40YKL012W CWC25P53854 179 aaKnown RBP4.91□□□□□ -1.62
PRP40YKL012W BCP1Q06338 283 aa4.91□□□□□ -1.62
PRP40YKL012W FCY22Q12119 530 aa4.91□□□□□ -1.62
PRP40YKL012W STH1P32597 1359 aa4.91□□□□□ -1.62
PRP40YKL012W YKR015CP36111 568 aa4.91□□□□□ -1.62
PRP40YKL012W AVT5P38176 459 aa4.91□□□□□ -1.62
PRP40YKL012W ECM8P38246 354 aa4.91□□□□□ -1.62
PRP40YKL012W YMR262WP38430 313 aa4.91□□□□□ -1.62
PRP40YKL012W PET100P38958 111 aa4.91□□□□□ -1.62
PRP40YKL012W YPR091CQ06833 770 aa4.91□□□□□ -1.62
PRP40YKL012W NDD1Q08887 554 aa4.91□□□□□ -1.62
PRP40YKL012W SLF1Q12034 447 aaKnown RBP4.91□□□□□ -1.62
PRP40YKL012W ESC1Q03661 1658 aaKnown RBP4.9□□□□□ -1.63
PRP40YKL012W RBK1P25332 333 aa4.9□□□□□ -1.63
PRP40YKL012W FUN26P31381 517 aa4.9□□□□□ -1.63
PRP40YKL012W YPT53P36019 220 aa4.9□□□□□ -1.63
PRP40YKL012W CIN2P46670 268 aa4.9□□□□□ -1.63
PRP40YKL012W MPP6P53725 186 aaPredicted RBP4.9□□□□□ -1.63
PRP40YKL012W CSI1Q04368 295 aa4.9□□□□□ -1.63
PRP40YKL012W RTN1Q04947 295 aaKnown RBP4.9□□□□□ -1.63
PRP40YKL012W YOR387CQ08910 206 aa4.9□□□□□ -1.63
PRP40YKL012W FMP16Q12497 93 aa4.9□□□□□ -1.63
PRP40YKL012W UBA3Q99344 299 aa4.9□□□□□ -1.63
PRP40YKL012W YBT1P32386 1661 aa4.89□□□□□ -1.63
PRP40YKL012W RPL16AP26784 199 aaKnown RBP4.89□□□□□ -1.63
PRP40YKL012W DSE1P40077 573 aa4.89□□□□□ -1.63
PRP40YKL012W HAC1P41546 238 aa4.89□□□□□ -1.63
PRP40YKL012W YJR085CP47131 105 aaKnown RBP4.89□□□□□ -1.63
PRP40YKL012W SCS3P53012 380 aa4.89□□□□□ -1.63
PRP40YKL012W MKC7P53379 596 aa4.89□□□□□ -1.63
PRP40YKL012W YNL050CP53952 270 aa4.89□□□□□ -1.63
PRP40YKL012W PBA1Q05778 276 aa4.89□□□□□ -1.63
PRP40YKL012W SAM4Q08985 325 aaKnown RBP4.89□□□□□ -1.63
PRP40YKL012W ERV2Q12284 196 aa4.89□□□□□ -1.63
PRP40YKL012W ICT1Q12385 394 aa4.89□□□□□ -1.63
PRP40YKL012W CDC25P04821 1589 aa4.88□□□□□ -1.63
PRP40YKL012W RPS8AP0CX39 200 aaKnown RBP4.88□□□□□ -1.63
PRP40YKL012W RPS8BP0CX40 200 aaKnown RBP4.88□□□□□ -1.63
PRP40YKL012W GPI12P23797 304 aa4.88□□□□□ -1.63
PRP40YKL012W POP5P28005 173 aa4.88□□□□□ -1.63
PRP40YKL012W TMT1P32643 299 aa4.88□□□□□ -1.63
PRP40YKL012W SPP41P38904 1435 aa4.88□□□□□ -1.63
PRP40YKL012W GEA1P47102 1408 aaPredicted RBP4.88□□□□□ -1.63
PRP40YKL012W OKP1P53298 406 aa4.88□□□□□ -1.63
PRP40YKL012W TMS1Q12116 473 aa4.88□□□□□ -1.63
PRP40YKL012W SIA1Q12212 622 aa4.88□□□□□ -1.63
PRP40YKL012W VTH1P40438 1549 aa4.88□□□□□ -1.63
PRP40YKL012W VTH2P40890 1549 aa4.88□□□□□ -1.63
PRP40YKL012W TPO5P36029 618 aa4.88□□□□□ -1.63
PRP40YKL012W NDT80P38830 627 aa4.88□□□□□ -1.63
PRP40YKL012W LSG1P53145 640 aaKnown RBP4.88□□□□□ -1.63
PRP40YKL012W MSI1P13712 422 aa4.87□□□□□ -1.63
PRP40YKL012W CHA1P25379 360 aaKnown RBP4.87□□□□□ -1.63
PRP40YKL012W ITR2P30606 609 aa4.87□□□□□ -1.63
PRP40YKL012W RPT5P33297 434 aaKnown RBP4.87□□□□□ -1.63
PRP40YKL012W COX16P47081 118 aa4.87□□□□□ -1.63
PRP40YKL012W SHE10P53075 577 aa4.87□□□□□ -1.63
PRP40YKL012W MST27P53176 234 aa4.87□□□□□ -1.63
PRP40YKL012W YGR266WP53326 701 aa4.87□□□□□ -1.63
PRP40YKL012W BIO4P53630 237 aa4.87□□□□□ -1.63
PRP40YKL012W YLL007CQ07799 665 aa4.87□□□□□ -1.63
PRP40YKL012W YDL199CQ12407 687 aa4.87□□□□□ -1.63
PRP40YKL012W RAD7P06779 565 aa4.86□□□□□ -1.63
PRP40YKL012W NAM2P11325 894 aa4.86□□□□□ -1.63
PRP40YKL012W RPB5P20434 215 aa4.86□□□□□ -1.63
Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms