RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W DRS1P32892 752 aaKnown RBP15.57■□□□□ 0.08
PRP40YKL012W MTC1P47018 478 aaKnown RBP14.82□□□□□ -0.04
PRP40YKL012W BFR2Q06631 534 aaKnown RBP13.78□□□□□ -0.2
PRP40YKL012W TFA1P36100 482 aa13.48□□□□□ -0.25
PRP40YKL012W AVT3P36062 692 aa13.07□□□□□ -0.32
PRP40YKL012W DIP2Q12220 943 aaPredicted RBP13.03□□□□□ -0.32
PRP40YKL012W RQC2Q12532 1038 aaKnown RBP12.15□□□□□ -0.46
PRP40YKL012W RSE1Q04693 1361 aaKnown RBP12.1□□□□□ -0.47
PRP40YKL012W ISW2Q08773 1120 aa11.89□□□□□ -0.51
PRP40YKL012W RPG1P38249 964 aaKnown RBP11.71□□□□□ -0.54
PRP40YKL012W RPL17AP05740 184 aaKnown RBP11.59□□□□□ -0.55
PRP40YKL012W RPL17BP46990 184 aaKnown RBP11.59□□□□□ -0.55
PRP40YKL012W PRI1P10363 409 aa11.51□□□□□ -0.57
PRP40YKL012W REB1P21538 810 aa11.39□□□□□ -0.59
PRP40YKL012W DMA1P38823 416 aa11.35□□□□□ -0.59
PRP40YKL012W FAP1P53971 965 aa11.33□□□□□ -0.6
PRP40YKL012W PTP3P40048 928 aa11.27□□□□□ -0.61
PRP40YKL012W RIM101P33400 625 aa11.25□□□□□ -0.61
PRP40YKL012W SPT21P35209 758 aa11.25□□□□□ -0.61
PRP40YKL012W AAD16Q02895 342 aa11.2□□□□□ -0.62
PRP40YKL012W SSP1P38871 571 aa11.06□□□□□ -0.64
PRP40YKL012W TSR3Q12094 313 aaKnown RBP10.95□□□□□ -0.66
PRP40YKL012W OXP1P28273 1286 aa10.92□□□□□ -0.66
PRP40YKL012W TAF7Q05021 590 aa10.88□□□□□ -0.67
PRP40YKL012W YAH1Q12184 172 aaKnown RBP10.81□□□□□ -0.68
PRP40YKL012W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.81□□□□□ -0.68not detected
PRP40YKL012W YIL055CP40523 627 aaKnown RBP10.75□□□□□ -0.69
PRP40YKL012W YLR271WQ06152 274 aa10.74□□□□□ -0.69
PRP40YKL012W YKR023WP36119 530 aaKnown RBP10.72□□□□□ -0.69
PRP40YKL012W LEO1P38439 464 aa10.72□□□□□ -0.69
PRP40YKL012W MGA2P40578 1113 aa10.6□□□□□ -0.71
PRP40YKL012W RSM7P47150 247 aa10.58□□□□□ -0.72
PRP40YKL012W PRY3P47033 881 aa10.56□□□□□ -0.72
PRP40YKL012W SAS10Q12136 610 aaPredicted RBP10.56□□□□□ -0.72
PRP40YKL012W MRPL32P25348 183 aa10.52□□□□□ -0.73
PRP40YKL012W TFC8Q12308 588 aa10.51□□□□□ -0.73
PRP40YKL012W HOP09932 586 aa10.49□□□□□ -0.73
PRP40YKL012W LEU3P08638 886 aa10.47□□□□□ -0.73
PRP40YKL012W CST9Q06032 482 aa10.44□□□□□ -0.74
PRP40YKL012W DCD1P06773 312 aa10.39□□□□□ -0.75
PRP40YKL012W PSD2P53037 1138 aaKnown RBP10.39□□□□□ -0.75
PRP40YKL012W AI2P03876 854 aa10.34□□□□□ -0.75
PRP40YKL012W CDC27P38042 758 aa10.31□□□□□ -0.76
PRP40YKL012W BBC1P47068 1157 aa10.24□□□□□ -0.77
PRP40YKL012W BCH2P36122 765 aa10.23□□□□□ -0.77
PRP40YKL012W RAM2P29703 316 aa10.16□□□□□ -0.78
PRP40YKL012W RPN1P38764 993 aaKnown RBP10.12□□□□□ -0.79
PRP40YKL012W SET1P38827 1080 aaKnown RBP10.11□□□□□ -0.79
PRP40YKL012W EPS1P40557 701 aa10.09□□□□□ -0.79
PRP40YKL012W MRM1P25270 412 aa10.06□□□□□ -0.8
PRP40YKL012W YCK3P39962 524 aa10.06□□□□□ -0.8
PRP40YKL012W YPR148CQ06523 435 aa10.06□□□□□ -0.8
PRP40YKL012W CKB1P43639 278 aa10.05□□□□□ -0.8
PRP40YKL012W RCR1P38212 213 aa10.03□□□□□ -0.8
PRP40YKL012W HAA1Q12753 694 aaKnown RBP10.03□□□□□ -0.8
PRP40YKL012W SPB4P25808 606 aaPredicted RBP10.02□□□□□ -0.81
PRP40YKL012W BDF1P35817 686 aa10.01□□□□□ -0.81
PRP40YKL012W IFH1P39520 1085 aa10.01□□□□□ -0.81
PRP40YKL012W VPS70P47161 811 aa10.01□□□□□ -0.81
PRP40YKL012W RTG3P38165 486 aa9.98□□□□□ -0.81
PRP40YKL012W DMA2P53924 522 aa9.96□□□□□ -0.82
PRP40YKL012W MAK11P20484 414 aaKnown RBP9.95□□□□□ -0.82
PRP40YKL012W SCY1P53009 804 aa9.9□□□□□ -0.82
PRP40YKL012W DSF2P38213 736 aa9.86□□□□□ -0.83
PRP40YKL012W VPS29P38759 282 aa9.82□□□□□ -0.84
PRP40YKL012W PBS2P08018 668 aa9.81□□□□□ -0.84
PRP40YKL012W UBP10P53874 792 aaPredicted RBP9.8□□□□□ -0.84
PRP40YKL012W COQ8P27697 501 aa9.8□□□□□ -0.84
PRP40YKL012W MAP2P38174 421 aaKnown RBP9.78□□□□□ -0.84
PRP40YKL012W NOP53Q12080 455 aaKnown RBP9.77□□□□□ -0.85
PRP40YKL012W YNR021WP53723 404 aaKnown RBP9.73□□□□□ -0.85
PRP40YKL012W YMR1P47147 688 aaKnown RBP RIP-Chip data9.7□□□□□ -0.86not detected
PRP40YKL012W RLF2Q12495 606 aa9.7□□□□□ -0.86
PRP40YKL012W KIN1P13185 1064 aa9.69□□□□□ -0.86
PRP40YKL012W ABP1P15891 592 aaKnown RBP9.68□□□□□ -0.86
PRP40YKL012W SLX5P32828 619 aaKnown RBP9.68□□□□□ -0.86
PRP40YKL012W MIF2P35201 549 aa9.68□□□□□ -0.86
PRP40YKL012W REF2P42073 533 aaPredicted RBP9.68□□□□□ -0.86
PRP40YKL012W MAM3Q12296 706 aa9.68□□□□□ -0.86
PRP40YKL012W STS1P38637 319 aa9.66□□□□□ -0.86
PRP40YKL012W EDS1P38073 919 aa9.65□□□□□ -0.87
PRP40YKL012W AIM7Q12156 149 aa9.64□□□□□ -0.87
PRP40YKL012W GLC3P32775 704 aa9.62□□□□□ -0.87
PRP40YKL012W DBP1P24784 617 aaKnown RBP9.61□□□□□ -0.87
PRP40YKL012W YGL015CP33199 130 aa9.61□□□□□ -0.87
PRP40YKL012W IES2P40154 320 aa9.61□□□□□ -0.87
PRP40YKL012W NUP42P49686 430 aaKnown RBP9.6□□□□□ -0.87
PRP40YKL012W DIT2P21595 489 aa9.58□□□□□ -0.88
PRP40YKL012W YFR006WP43590 535 aa9.58□□□□□ -0.88
PRP40YKL012W MAK21Q12176 1025 aaKnown RBP9.58□□□□□ -0.88
PRP40YKL012W COX6P00427 148 aa9.55□□□□□ -0.88
PRP40YKL012W PTC3P34221 468 aaKnown RBP9.55□□□□□ -0.88
PRP40YKL012W HGH1P48362 394 aaKnown RBP9.55□□□□□ -0.88
PRP40YKL012W YOR238WQ08634 303 aa9.55□□□□□ -0.88
PRP40YKL012W GUA1P38625 525 aaKnown RBP9.48□□□□□ -0.89
PRP40YKL012W ATF2P53296 535 aa9.47□□□□□ -0.89
PRP40YKL012W NSR1P27476 414 aaKnown RBP RIP-Chip data9.45□□□□□ -0.9not detected
PRP40YKL012W YDR090CQ03193 310 aa9.41□□□□□ -0.9
PRP40YKL012W UBP14P38237 781 aaKnown RBP9.4□□□□□ -0.9
PRP40YKL012W HPC2Q01448 625 aa9.4□□□□□ -0.9
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms