RNA–Protein interactions for RNA: snR55

snR55, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR55, Length 98 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR55	snR55	PRP38	Q00723	242 aa	Predicted RBP	0.64	□□□□□ -2.31
snR55	snR55	MIX17	Q03667	156 aa		0.64	□□□□□ -2.31
snR55	snR55	YLR177W	Q06251	628 aa		0.64	□□□□□ -2.31
snR55	snR55	NCA2	Q12374	616 aa		0.64	□□□□□ -2.31
snR55	snR55	EPT1	P22140	391 aa		0.63	□□□□□ -2.31
snR55	snR55	OCA4	P25366	362 aa		0.63	□□□□□ -2.31
snR55	snR55	GPI10	P30777	616 aa		0.63	□□□□□ -2.31
snR55	snR55	RRT13	P40042	185 aa		0.63	□□□□□ -2.31
snR55	snR55	TPM2	P40414	161 aa		0.63	□□□□□ -2.31
snR55	snR55	RMD8	P43620	662 aa		0.63	□□□□□ -2.31
snR55	snR55	AIP1	P46680	615 aa	Known RBP	0.63	□□□□□ -2.31
snR55	snR55	ALF1	P53904	254 aa		0.63	□□□□□ -2.31
snR55	snR55	SRO7	Q12038	1033 aa		0.63	□□□□□ -2.31
snR55	snR55	VAM3	Q12241	283 aa		0.63	□□□□□ -2.31
snR55	snR55	GCN4	P03069	281 aa		0.62	□□□□□ -2.31
snR55	snR55	SNF6	P18888	332 aa		0.62	□□□□□ -2.31
snR55	snR55	VPS24	P36095	224 aa	Known RBP	0.62	□□□□□ -2.31
snR55	snR55	FUI1	P38196	639 aa		0.62	□□□□□ -2.31
snR55	snR55	MMS4	P38257	691 aa		0.62	□□□□□ -2.31
snR55	snR55	SPO22	P40511	975 aa		0.62	□□□□□ -2.31
snR55	snR55	ASA1	Q06822	443 aa		0.62	□□□□□ -2.31
snR55	snR55	SSC1	P0CS90	654 aa	Known RBP	0.61	□□□□□ -2.31
snR55	snR55	RPL3	P14126	387 aa	Known RBP	0.61	□□□□□ -2.31
snR55	snR55	NIP1	P32497	812 aa	Known RBP	0.61	□□□□□ -2.31
snR55	snR55	SKG6	P32900	734 aa	Predicted RBP	0.61	□□□□□ -2.31
snR55	snR55	TKL2	P33315	681 aa		0.61	□□□□□ -2.31
snR55	snR55	ATP3	P38077	311 aa	Known RBP	0.61	□□□□□ -2.31
snR55	snR55	LSM12	P38828	187 aa	Known RBP	0.61	□□□□□ -2.31
snR55	snR55	BIO3	P50277	480 aa		0.61	□□□□□ -2.31
snR55	snR55	YAL067W-A	Q8TGK6	75 aa		0.61	□□□□□ -2.31
snR55	snR55	HOM3	P10869	527 aa		0.6	□□□□□ -2.31
snR55	snR55	YBL081W	P38180	368 aa	Known RBP	0.6	□□□□□ -2.31
snR55	snR55	RRN10	P38204	145 aa		0.6	□□□□□ -2.31
snR55	snR55	FMS1	P50264	508 aa		0.6	□□□□□ -2.31
snR55	snR55	RRP46	P53256	223 aa	Predicted RBP	0.6	□□□□□ -2.31
snR55	snR55	RPA49	Q01080	415 aa	Predicted RBP	0.6	□□□□□ -2.31
snR55	snR55	RMI1	Q02685	241 aa		0.6	□□□□□ -2.31
snR55	snR55	STD1	Q02794	444 aa		0.6	□□□□□ -2.31
snR55	snR55	MSC3	Q05812	728 aa		0.6	□□□□□ -2.31
snR55	snR55	FRE8	Q12209	686 aa		0.6	□□□□□ -2.31
snR55	snR55	HSP42	Q12329	375 aa		0.6	□□□□□ -2.31
snR55	snR55	ENT1	Q12518	454 aa		0.6	□□□□□ -2.31
snR55	snR55	CKA2	P19454	339 aa		0.59	□□□□□ -2.31
snR55	snR55	CHA1	P25379	360 aa	Known RBP	0.59	□□□□□ -2.31
snR55	snR55	PWP2	P25635	923 aa	Known RBP	0.59	□□□□□ -2.31
snR55	snR55	MIG1	P27705	504 aa		0.59	□□□□□ -2.31
snR55	snR55	ANP1	P32629	500 aa		0.59	□□□□□ -2.31
snR55	snR55	RAD5	P32849	1169 aa	Predicted RBP	0.59	□□□□□ -2.31
snR55	snR55	SPO23	P33757	523 aa		0.59	□□□□□ -2.31
snR55	snR55	SKT5	P34226	696 aa		0.59	□□□□□ -2.31
snR55	snR55	VHS2	P40463	436 aa		0.59	□□□□□ -2.31
snR55	snR55	VTI1	Q04338	217 aa		0.59	□□□□□ -2.31
snR55	snR55	PLB3	Q08108	686 aa		0.59	□□□□□ -2.31
snR55	snR55	YDR056C	Q12025	205 aa		0.59	□□□□□ -2.31
snR55	snR55	SFM1	Q12314	213 aa		0.59	□□□□□ -2.31
snR55	snR55	HTZ1	Q12692	134 aa	Known RBP	0.59	□□□□□ -2.31
snR55	snR55	POM152	P39685	1337 aa		0.59	□□□□□ -2.32
snR55	snR55	FLO11	P08640	1367 aa		0.58	□□□□□ -2.32
snR55	snR55	SPS19	P32573	292 aa	Known RBP	0.58	□□□□□ -2.32
snR55	snR55	SHE3	P38272	425 aa	Known RBP	0.58	□□□□□ -2.32
snR55	snR55	UFE1	P41834	346 aa		0.58	□□□□□ -2.32
snR55	snR55	BAT2	P47176	376 aa	Known RBP	0.58	□□□□□ -2.32
snR55	snR55	TRF5	P48561	642 aa	Known RBP	0.58	□□□□□ -2.32
snR55	snR55	ASN2	P49090	572 aa	Known RBP	0.58	□□□□□ -2.32
snR55	snR55	YGL088W	P53151	121 aa		0.58	□□□□□ -2.32
snR55	snR55	VTA1	Q06263	330 aa		0.58	□□□□□ -2.32
snR55	snR55	LDB17	Q12342	491 aa		0.58	□□□□□ -2.32
snR55	snR55	COX3	P00420	269 aa		0.57	□□□□□ -2.32
snR55	snR55	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.57	□□□□□ -2.32	not detected
snR55	snR55	SHE1	P38200	338 aa		0.57	□□□□□ -2.32
snR55	snR55	ECM8	P38246	354 aa		0.57	□□□□□ -2.32
snR55	snR55	BDH1	P39714	382 aa		0.57	□□□□□ -2.32
snR55	snR55	CTK3	P46963	296 aa	Predicted RBP	0.57	□□□□□ -2.32
snR55	snR55	REX2	P54964	269 aa	Known RBP	0.57	□□□□□ -2.32
snR55	snR55	MMT1	Q03218	510 aa		0.57	□□□□□ -2.32
snR55	snR55	CLP1	Q08685	445 aa	Predicted RBP	0.57	□□□□□ -2.32
snR55	snR55	BUG1	Q12191	341 aa		0.57	□□□□□ -2.32
snR55	snR55	HIF1	Q12373	385 aa		0.57	□□□□□ -2.32
snR55	snR55	GRX6	Q12438	231 aa		0.57	□□□□□ -2.32
snR55	snR55	ADE4	P04046	510 aa	Known RBP	0.56	□□□□□ -2.32
snR55	snR55	RPS18A	P0CX55	146 aa	Known RBP	0.56	□□□□□ -2.32
snR55	snR55	RPS18B	P0CX56	146 aa	Predicted RBP	0.56	□□□□□ -2.32
snR55	snR55	ALG1	P16661	449 aa		0.56	□□□□□ -2.32
snR55	snR55	COX10	P21592	462 aa		0.56	□□□□□ -2.32
snR55	snR55	SSH4	P32343	579 aa		0.56	□□□□□ -2.32
snR55	snR55	YBR241C	P38142	488 aa		0.56	□□□□□ -2.32
snR55	snR55	GPX2	P38143	162 aa		0.56	□□□□□ -2.32
snR55	snR55	SMF1	P38925	575 aa		0.56	□□□□□ -2.32
snR55	snR55	RBG1	P39729	369 aa		0.56	□□□□□ -2.32
snR55	snR55	MNP1	P53163	194 aa	Predicted RBP	0.56	□□□□□ -2.32
snR55	snR55	RNH201	P53942	307 aa		0.56	□□□□□ -2.32
snR55	snR55	SED5	Q01590	340 aa		0.56	□□□□□ -2.32
snR55	snR55	MRX11	Q03079	207 aa		0.56	□□□□□ -2.32
snR55	snR55	COG4	Q06096	861 aa		0.56	□□□□□ -2.32
snR55	snR55	YDL211C	Q12121	372 aa		0.56	□□□□□ -2.32
snR55	snR55	PCL9	Q12477	304 aa		0.56	□□□□□ -2.32
snR55	snR55	ARG3	P05150	338 aa		0.55	□□□□□ -2.32
snR55	snR55	UNG1	P12887	359 aa		0.55	□□□□□ -2.32
snR55	snR55	RAD23	P32628	398 aa	Known RBP	0.55	□□□□□ -2.32
snR55	snR55	ECM14	P38836	430 aa		0.55	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms